Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003897

Physical Location & Seq

Genomic Coordinates Reverse (-)

50925267 .. 50927600

Gene Structure 2334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00119140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTAGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACTATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTGAACCAGAAAAGTTTGGGTAAAGCCGGAGCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L2 Ribosomal_L23 Ribosomal_L2_C

Protein Analysis

274

Amino Acids

29.8

Weight (kDa)

10.65

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L2_N	PF00181	28 - 116	3.3e-34	Ribosomal Proteins L2, RNA binding N-terminal domain
Ribosomal_L2_C	PF03947	123 - 249	1.3e-53	Ribosomal Proteins L2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00830 ATCG01310
fragaria_vesca	FvH4_c3g00170
pyrus_communis	pycom12397g00040 pycom12397g00160 pycom520g00580
rosa_chinensis	RchiOBHm_Chr1g0329581 RchiOBHm_Chr2g0118521 RchiOBHm_Chr3g0480391 RchiOBHm_Chr3g0482311 RchiOBHm_CPg0502561 RchiOBHm_CPg0502581
rosa_laevigata	RLG00000000008 RLG00000000032 RLG00000000035 RLG00000000053 RLG00000000058 RLG00000000093 RLG00000000157 RLG00000000180 RLG00000000216 RLG00000000238 RLG00000000253 RLG00000000307 RLG00000000415 RLG00000037091 RLG00000037100
rosa_roxburghii	Rroxscaffold_2G00119140
rosa_rugosa	RorugMtG0002900.1 RorugMtG0003600.1 RorugMtG0003700.1
rosa_samantha	Rh1AG125100 Rh3CG278100 Rh3CG278800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	458
Acc36I	ACCTGC	1 cut(s)	458
AccI	GTMKAC	2 cut(s)	54, 678
AciI	CCGC	2 cut(s)	144, 732
AcoI	YGGCCR	2 cut(s)	411, 507
AfaI	GTAC	1 cut(s)	352
AfiI	CCNNNNNNNGG	2 cut(s)	692, 758
AjuI	GAANNNNNNNTTGG	2 cut(s)	420, 452
AluBI	AGCT	2 cut(s)	458, 623
AluI	AGCT	2 cut(s)	458, 623
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	275
AlwNI	CAGNNNCTG	1 cut(s)	473
Ama87I	CYCGRG	1 cut(s)	31
AoxI	GGCC	3 cut(s)	411, 507, 708
ApaI	GGGCCC	1 cut(s)	712
ApeKI	GCWGC	1 cut(s)	464
AspS9I	GGNCC	3 cut(s)	535, 708, 709
AsuHPI	GGTGA	3 cut(s)	302, 604, 710
AvaI	CYCGRG	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	535
AxyI	CCTNAGG	1 cut(s)	403
BaeGI	GKGCMC	1 cut(s)	712
BaeI	ACNNNNGTAYC	4 cut(s)	327, 342, 360, 375
BanII	GRGCYC	1 cut(s)	712
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	476
BccI	CCATC	2 cut(s)	281, 690
BceAI	ACGGC	3 cut(s)	35, 426, 798
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	2 cut(s)	459, 635
BfmI	CTRYAG	4 cut(s)	234, 474, 648, 675
BfuAI	ACCTGC	1 cut(s)	458
BisI	GCNGC	1 cut(s)	465
BlpI	GCTNAGC	1 cut(s)	559
BlsI	GCNGC	1 cut(s)	466
Bme18I	GGWCC	1 cut(s)	535
BmeT110I	CYCGRG	1 cut(s)	31
BmgT120I	GGNCC	3 cut(s)	535, 708, 709
BmiI	GGNNCC	3 cut(s)	49, 710, 711
BmsI	GCATC	1 cut(s)	112
Bpu1102I	GCTNAGC	1 cut(s)	559
Bsa29I	ATCGAT	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	688, 740
Bsc4I	CCNNNNNNNGG	2 cut(s)	692, 758
Bse21I	CCTNAGG	1 cut(s)	403
Bse3DI	GCAATG	1 cut(s)	49
BseCI	ATCGAT	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	688, 740
BseGI	GGATG	3 cut(s)	292, 310, 682
BseLI	CCNNNNNNNGG	2 cut(s)	692, 758
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	573
BseRI	GAGGAG	1 cut(s)	672
BseSI	GKGCMC	1 cut(s)	712
BseXI	GCAGC	1 cut(s)	476
BsgI	GTGCAG	1 cut(s)	738
BshFI	GGCC	3 cut(s)	413, 509, 710
BshVI	ATCGAT	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	618
BslI	CCNNNNNNNGG	2 cut(s)	692, 758
BsmAI	GTCTC	1 cut(s)	275
BsnI	GGCC	3 cut(s)	413, 509, 710
BsoBI	CYCGRG	1 cut(s)	31
Bsp120I	GGGCCC	1 cut(s)	708
Bsp1286I	GDGCHC	2 cut(s)	38, 712
Bsp143I	GATC	1 cut(s)	90
Bsp1720I	GCTNAGC	1 cut(s)	559
Bsp19I	CCATGG	1 cut(s)	688
BspACI	CCGC	2 cut(s)	144, 732
BspANI	GGCC	3 cut(s)	413, 509, 710
BspCNI	CTCAG	1 cut(s)	572
BspDI	ATCGAT	1 cut(s)	189
BspLI	GGNNCC	3 cut(s)	49, 710, 711
BspMI	ACCTGC	1 cut(s)	458
BsrDI	GCAATG	1 cut(s)	49
BssECI	CCNNGG	2 cut(s)	688, 740
BssMI	GATC	1 cut(s)	90
BssT1I	CCWWGG	2 cut(s)	688, 740
Bst4CI	ACNGT	3 cut(s)	59, 182, 568
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstDEI	CTNAG	2 cut(s)	403, 559
BstDSI	CCRYGG	1 cut(s)	688
BstF5I	GGATG	3 cut(s)	292, 310, 682
BstKTI	GATC	1 cut(s)	93
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	1 cut(s)	90
BstMWI	GCNNNNNNNGC	3 cut(s)	464, 470, 640
BstSFI	CTRYAG	4 cut(s)	234, 474, 648, 675
BstSLI	GKGCMC	1 cut(s)	712
BstV1I	GCAGC	1 cut(s)	476
BstXI	CCANNNNNNTGG	2 cut(s)	689, 695
Bsu15I	ATCGAT	1 cut(s)	189
Bsu36I	CCTNAGG	1 cut(s)	403
BsuRI	GGCC	3 cut(s)	413, 509, 710
BsuTUI	ATCGAT	1 cut(s)	189
BtgI	CCRYGG	1 cut(s)	688
BtsCI	GGATG	3 cut(s)	292, 310, 682
BveI	ACCTGC	1 cut(s)	458
CaiI	CAGNNNCTG	1 cut(s)	473
Cfr13I	GGNCC	3 cut(s)	535, 708, 709
ClaI	ATCGAT	1 cut(s)	189
CseI	GACGC	2 cut(s)	161, 632
Csp6I	GTAC	1 cut(s)	351
CviAII	CATG	1 cut(s)	689
CviJI	RGCY	9 cut(s)	50, 323, 413, 458, 509, 617, 623, 634, 710
CviKI_1	RGCY	9 cut(s)	50, 323, 413, 458, 509, 617, 623, 634, 710
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	2 cut(s)	403, 559
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
EaeI	YGGCCR	2 cut(s)	411, 507
Eco130I	CCWWGG	2 cut(s)	688, 740
Eco24I	GRGCYC	1 cut(s)	712
Eco32I	GATATC	1 cut(s)	546
Eco47I	GGWCC	1 cut(s)	535
Eco81I	CCTNAGG	1 cut(s)	403
Eco88I	CYCGRG	1 cut(s)	31
EcoO109I	RGGNCCY	2 cut(s)	708, 709
EcoRV	GATATC	1 cut(s)	546
EcoT14I	CCWWGG	2 cut(s)	688, 740
EcoT22I	ATGCAT	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	712
ErhI	CCWWGG	2 cut(s)	688, 740
FaeI	CATG	1 cut(s)	692
FatI	CATG	1 cut(s)	688
FauI	CCCGC	1 cut(s)	739
FblI	GTMKAC	2 cut(s)	54, 678
Fnu4HI	GCNGC	1 cut(s)	465
FokI	GGATG	3 cut(s)	297, 299, 669
FriOI	GRGCYC	1 cut(s)	712
Fsp4HI	GCNGC	1 cut(s)	465
FspBI	CTAG	2 cut(s)	459, 635
GluI	GCNGC	1 cut(s)	465
HaeIII	GGCC	3 cut(s)	413, 509, 710
HapII	CCGG	1 cut(s)	618
HgaI	GACGC	2 cut(s)	161, 632
Hin1II	CATG	1 cut(s)	692
HinfI	GANTC	3 cut(s)	135, 225, 802
HpaII	CCGG	1 cut(s)	618
HphI	GGTGA	3 cut(s)	302, 604, 710
Hpy166II	GTNNAC	4 cut(s)	55, 449, 595, 679
Hpy188I	TCNGA	1 cut(s)	572
Hpy8I	GTNNAC	4 cut(s)	55, 449, 595, 679
Hpy99I	CGWCG	2 cut(s)	201, 813
HpyAV	CCTTC	2 cut(s)	534, 695
HpyCH4III	ACNGT	3 cut(s)	59, 182, 568
HpyCH4V	TGCA	3 cut(s)	260, 491, 755
HpyF10VI	GCNNNNNNNGC	3 cut(s)	464, 470, 640
HpyF3I	CTNAG	2 cut(s)	403, 559
Hsp92II	CATG	1 cut(s)	692
Kzo9I	GATC	1 cut(s)	90
LmnI	GCTCC	2 cut(s)	47, 620
Lsp1109I	GCAGC	1 cut(s)	476
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	2 cut(s)	459, 635
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MboII	GAAGA	3 cut(s)	774, 777, 797
MfeI	CAATTG	1 cut(s)	714
MhlI	GDGCHC	2 cut(s)	38, 712
MluCI	AATT	6 cut(s)	85, 327, 452, 518, 714, 796
MmeI	TCCRAC	1 cut(s)	550
MnlI	CCTC	8 cut(s)	125, 149, 155, 311, 490, 526, 650, 699
Mph1103I	ATGCAT	1 cut(s)	262
MseI	TTAA	1 cut(s)	515
MslI	CAYNNNNRTG	2 cut(s)	687, 693
MspI	CCGG	1 cut(s)	618
MunI	CAATTG	1 cut(s)	714
MwoI	GCNNNNNNNGC	3 cut(s)	464, 470, 640
NcoI	CCATGG	1 cut(s)	688
NdeII	GATC	1 cut(s)	90
NlaIII	CATG	1 cut(s)	692
NlaIV	GGNNCC	3 cut(s)	49, 710, 711
NsiI	ATGCAT	1 cut(s)	262
PaqCI	CACCTGC	1 cut(s)	458
PfeI	GAWTC	3 cut(s)	135, 225, 802
PkrI	GCNGC	1 cut(s)	466
PspN4I	GGNNCC	3 cut(s)	49, 710, 711
PspOMI	GGGCCC	1 cut(s)	708
PspPI	GGNCC	3 cut(s)	535, 708, 709
PstNI	CAGNNNCTG	1 cut(s)	473
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
RseI	CAYNNNNRTG	2 cut(s)	687, 693
SaqAI	TTAA	1 cut(s)	515
SatI	GCNGC	1 cut(s)	465
Sau3AI	GATC	1 cut(s)	90
Sau96I	GGNCC	3 cut(s)	535, 708, 709
SduI	GDGCHC	2 cut(s)	38, 712
SetI	ASST	9 cut(s)	121, 166, 388, 460, 472, 526, 537, 625, 640
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	4 cut(s)	234, 474, 648, 675
SinI	GGWCC	1 cut(s)	535
SmiMI	CAYNNNNRTG	2 cut(s)	687, 693
Sse9I	AATT	6 cut(s)	85, 327, 452, 518, 714, 796
SsiI	CCGC	2 cut(s)	144, 732
SspMI	CTAG	2 cut(s)	459, 635
StyI	CCWWGG	2 cut(s)	688, 740
TaaI	ACNGT	3 cut(s)	59, 182, 568
TaqI	TCGA	3 cut(s)	189, 196, 253
TaqII	GACCGA	1 cut(s)	407
TasI	AATT	6 cut(s)	85, 327, 452, 518, 714, 796
TfiI	GAWTC	3 cut(s)	135, 225, 802
Tru1I	TTAA	1 cut(s)	515
Tru9I	TTAA	1 cut(s)	515
TseI	GCWGC	1 cut(s)	464
TspDTI	ATGAA	2 cut(s)	219, 683
TspGWI	ACGGA	2 cut(s)	214, 527
VpaK11BI	GGWCC	1 cut(s)	535
XmiI	GTMKAC	2 cut(s)	54, 678
XspI	CTAG	2 cut(s)	459, 635
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.