Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003897

Physical Location & Seq

Genomic Coordinates Reverse (-)

26223631 .. 26223945

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44541

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAGGGGAGGGCCCCAATTGGTAGAAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGTACAAAAATAAAAACAAGGTAGAAATAGATCACCTGGCTTCTTTTGAATCGAAAATGGTTTGTCAATTACCCAGATTCGTTGAAAGTGAAAGCGATGATCATCATTTGCTTCAAATTTCTTGCAAGTCAGAGGCTTGCCTAACAAATAGAATTAAGTGGATTTTTGAACCGAGCTGCCTCAAATTCTTGTCAAATTCACTACGCTACCACCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000313 GO:0000315 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0031967 GO:0031974 GO:0031975 GO:0032543 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L2 Ribosomal_L2_C

Protein Analysis

104

Amino Acids

11.93

Weight (kDa)

9.08

Isoelectric Point (pI)

56.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00830 ATCG01310
fragaria_vesca	FvH4_c3g00170
pyrus_communis	pycom12397g00040 pycom12397g00160 pycom520g00580
rosa_chinensis	RchiOBHm_Chr1g0329581 RchiOBHm_Chr2g0118521 RchiOBHm_Chr3g0480391 RchiOBHm_Chr3g0482311 RchiOBHm_CPg0502561 RchiOBHm_CPg0502581
rosa_laevigata	RLG00000000008 RLG00000000032 RLG00000000035 RLG00000000053 RLG00000000058 RLG00000000093 RLG00000000157 RLG00000000180 RLG00000000216 RLG00000000238 RLG00000000253 RLG00000000307 RLG00000000415 RLG00000037091 RLG00000037100
rosa_roxburghii	Rroxscaffold_2G00119140
rosa_rugosa	RorugMtG0002900.1 RorugMtG0003600.1 RorugMtG0003700.1
rosa_samantha	Rh1AG125100 Rh3CG278100 Rh3CG278800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	12
AciI	CCGC	1 cut(s)	67
AcsI	RAATTY	3 cut(s)	213, 281, 292
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	2 cut(s)	26, 93
AgsI	TTSAA	4 cut(s)	146, 182, 212, 266
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	1 cut(s)	273
AluI	AGCT	1 cut(s)	273
AoxI	GGCC	1 cut(s)	42
ApaI	GGGCCC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	273
ApoI	RAATTY	3 cut(s)	213, 281, 292
AspS9I	GGNCC	2 cut(s)	42, 43
AsuHPI	GGTGA	2 cut(s)	44, 122
BaeGI	GKGCMC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	1 cut(s)	24
BciT130I	CCWGG	1 cut(s)	134
BclI	TGATCA	1 cut(s)	196
BfaI	CTAG	1 cut(s)	313
BfmI	CTRYAG	1 cut(s)	9
BisI	GCNGC	1 cut(s)	274
BlsI	GCNGC	1 cut(s)	275
Bme1390I	CCNGG	1 cut(s)	134
BmgT120I	GGNCC	2 cut(s)	42, 43
BmiI	GGNNCC	2 cut(s)	44, 45
BmrFI	CCNGG	1 cut(s)	134
BsaBI	GATNNNNATC	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	22, 75
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 93
Bse8I	GATNNNNATC	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	2 cut(s)	22, 75
BseGI	GGATG	1 cut(s)	16
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	2 cut(s)	26, 93
BseSI	GKGCMC	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	260
BsgI	GTGCAG	1 cut(s)	73
BshFI	GGCC	1 cut(s)	44
BslI	CCNNNNNNNGG	2 cut(s)	26, 93
BsnI	GGCC	1 cut(s)	44
Bsp120I	GGGCCC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	2 cut(s)	127, 196
Bsp19I	CCATGG	1 cut(s)	22
BspACI	CCGC	1 cut(s)	67
BspANI	GGCC	1 cut(s)	44
BspLI	GGNNCC	2 cut(s)	44, 45
BssECI	CCNNGG	2 cut(s)	22, 75
BssMI	GATC	2 cut(s)	127, 196
BssT1I	CCWWGG	2 cut(s)	22, 75
Bst2UI	CCWGG	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	235
BstDSI	CCRYGG	1 cut(s)	22
BstF5I	GGATG	1 cut(s)	16
BstKTI	GATC	2 cut(s)	130, 199
BstMBI	GATC	2 cut(s)	127, 196
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	132
BstSFI	CTRYAG	1 cut(s)	9
BstSLI	GKGCMC	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	260
BstXI	CCANNNNNNTGG	2 cut(s)	23, 29
BsuRI	GGCC	1 cut(s)	44
BtgI	CCRYGG	1 cut(s)	22
BtgZI	GCGATG	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	235
Cfr13I	GGNCC	2 cut(s)	42, 43
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	1 cut(s)	23
CviJI	RGCY	4 cut(s)	44, 137, 233, 273
CviKI_1	RGCY	4 cut(s)	44, 137, 233, 273
CviQI	GTAC	1 cut(s)	100
DpnI	GATC	2 cut(s)	129, 198
DpnII	GATC	2 cut(s)	127, 196
Eco130I	CCWWGG	2 cut(s)	22, 75
Eco24I	GRGCYC	1 cut(s)	46
EcoO109I	RGGNCCY	2 cut(s)	42, 43
EcoRII	CCWGG	1 cut(s)	132
EcoT14I	CCWWGG	2 cut(s)	22, 75
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	2 cut(s)	22, 75
FaeI	CATG	1 cut(s)	26
FaiI	YATR	1 cut(s)	24
FatI	CATG	1 cut(s)	22
FauI	CCCGC	1 cut(s)	74
FbaI	TGATCA	1 cut(s)	196
FblI	GTMKAC	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	274
FokI	GGATG	1 cut(s)	3
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	274
FspBI	CTAG	1 cut(s)	313
GluI	GCNGC	1 cut(s)	274
HaeIII	GGCC	1 cut(s)	44
Hin1II	CATG	1 cut(s)	26
HinfI	GANTC	2 cut(s)	146, 174
HphI	GGTGA	2 cut(s)	44, 122
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	1 cut(s)	229
Hpy8I	GTNNAC	1 cut(s)	13
HpyCH4V	TGCA	2 cut(s)	90, 222
Hsp92II	CATG	1 cut(s)	26
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	127, 196
LpnPI	CCDG	5 cut(s)	21, 100, 119, 146, 184
Lsp1109I	GCAGC	1 cut(s)	260
MaeI	CTAG	1 cut(s)	313
MalI	GATC	2 cut(s)	129, 198
MboI	GATC	2 cut(s)	127, 196
MfeI	CAATTG	1 cut(s)	48
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	6 cut(s)	48, 164, 213, 249, 281, 292
MnlI	CCTC	4 cut(s)	28, 33, 223, 287
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	2 cut(s)	21, 27
MspR9I	CCNGG	1 cut(s)	134
MunI	CAATTG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	134
NcoI	CCATGG	1 cut(s)	22
NdeII	GATC	2 cut(s)	127, 196
NlaIII	CATG	1 cut(s)	26
NlaIV	GGNNCC	2 cut(s)	44, 45
PfeI	GAWTC	2 cut(s)	146, 174
PkrI	GCNGC	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	2 cut(s)	44, 45
PspOMI	GGGCCC	1 cut(s)	42
PspPI	GGNCC	2 cut(s)	42, 43
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
RseI	CAYNNNNRTG	2 cut(s)	21, 27
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	1 cut(s)	274
Sau3AI	GATC	2 cut(s)	127, 196
Sau96I	GGNCC	2 cut(s)	42, 43
ScrFI	CCNGG	1 cut(s)	134
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	3 cut(s)	120, 135, 275
SfcI	CTRYAG	1 cut(s)	9
SmiMI	CAYNNNNRTG	2 cut(s)	21, 27
Sse9I	AATT	6 cut(s)	48, 164, 213, 249, 281, 292
SsiI	CCGC	1 cut(s)	67
SspMI	CTAG	1 cut(s)	313
StyD4I	CCNGG	1 cut(s)	132
StyI	CCWWGG	2 cut(s)	22, 75
TaqI	TCGA	1 cut(s)	149
TasI	AATT	6 cut(s)	48, 164, 213, 249, 281, 292
TatI	WGTACW	1 cut(s)	99
TfiI	GAWTC	2 cut(s)	146, 174
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TseI	GCWGC	1 cut(s)	273
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	3 cut(s)	213, 281, 292
XmiI	GTMKAC	1 cut(s)	12
XspI	CTAG	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.