Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003897

Physical Location & Seq

Genomic Coordinates Reverse (-)

113580 .. 114554

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ15727

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTAGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACTATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGATCCATCTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L2

Protein Analysis

136

Amino Acids

15.17

Weight (kDa)

10.0

Isoelectric Point (pI)

33.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L2_N	PF00181	28 - 116	5.8e-35	Ribosomal Proteins L2, RNA binding N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00830 ATCG01310
fragaria_vesca	FvH4_c3g00170
pyrus_communis	pycom12397g00040 pycom12397g00160 pycom520g00580
rosa_chinensis	RchiOBHm_Chr1g0329581 RchiOBHm_Chr2g0118521 RchiOBHm_Chr3g0480391 RchiOBHm_Chr3g0482311 RchiOBHm_CPg0502561 RchiOBHm_CPg0502581
rosa_laevigata	RLG00000000008 RLG00000000032 RLG00000000035 RLG00000000053 RLG00000000058 RLG00000000093 RLG00000000157 RLG00000000180 RLG00000000216 RLG00000000238 RLG00000000253 RLG00000000307 RLG00000000415 RLG00000037091 RLG00000037100
rosa_roxburghii	Rroxscaffold_2G00119140
rosa_rugosa	RorugMtG0002900.1 RorugMtG0003600.1 RorugMtG0003700.1
rosa_samantha	Rh1AG125100 Rh3CG278100 Rh3CG278800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	54
AciI	CCGC	2 cut(s)	144, 395
AclWI	GGATC	2 cut(s)	392, 405
AfaI	GTAC	1 cut(s)	352
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	2 cut(s)	392, 405
Ama87I	CYCGRG	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	302
AvaI	CYCGRG	1 cut(s)	31
BaeI	ACNNNNGTAYC	4 cut(s)	327, 342, 360, 375
BamHI	GGATCC	1 cut(s)	397
Bbv12I	GWGCWC	1 cut(s)	38
BccI	CCATC	2 cut(s)	281, 409
BceAI	ACGGC	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	275
BfmI	CTRYAG	1 cut(s)	234
BmeT110I	CYCGRG	1 cut(s)	31
BmiI	GGNNCC	2 cut(s)	49, 399
BmsI	GCATC	1 cut(s)	112
Bsa29I	ATCGAT	1 cut(s)	189
Bse3DI	GCAATG	1 cut(s)	49
BseCI	ATCGAT	1 cut(s)	189
BseGI	GGATG	2 cut(s)	292, 310
BseMI	GCAATG	1 cut(s)	49
BshVI	ATCGAT	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	31
BsmAI	GTCTC	1 cut(s)	275
BsoBI	CYCGRG	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	90, 397
BspACI	CCGC	2 cut(s)	144, 395
BspDI	ATCGAT	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	49, 399
BspPI	GGATC	2 cut(s)	392, 405
BsrDI	GCAATG	1 cut(s)	49
BssMI	GATC	2 cut(s)	90, 397
Bst4CI	ACNGT	2 cut(s)	59, 182
BstF5I	GGATG	2 cut(s)	292, 310
BstKTI	GATC	2 cut(s)	93, 400
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	2 cut(s)	90, 397
BstSFI	CTRYAG	1 cut(s)	234
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
Bsu15I	ATCGAT	1 cut(s)	189
BsuTUI	ATCGAT	1 cut(s)	189
BtsCI	GGATG	2 cut(s)	292, 310
ClaI	ATCGAT	1 cut(s)	189
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	351
CviJI	RGCY	2 cut(s)	50, 323
CviKI_1	RGCY	2 cut(s)	50, 323
CviQI	GTAC	1 cut(s)	351
DpnI	GATC	2 cut(s)	92, 399
DpnII	GATC	2 cut(s)	90, 397
Eco88I	CYCGRG	1 cut(s)	31
EcoT22I	ATGCAT	1 cut(s)	262
FblI	GTMKAC	1 cut(s)	54
FokI	GGATG	2 cut(s)	297, 299
HgaI	GACGC	1 cut(s)	161
HinfI	GANTC	2 cut(s)	135, 225
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	1 cut(s)	55
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	201
HpyCH4III	ACNGT	2 cut(s)	59, 182
HpyCH4V	TGCA	1 cut(s)	260
Kzo9I	GATC	2 cut(s)	90, 397
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	4 cut(s)	132, 142, 328, 333
LweI	GCATC	1 cut(s)	112
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	2 cut(s)	92, 399
MboI	GATC	2 cut(s)	90, 397
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	2 cut(s)	85, 327
MnlI	CCTC	4 cut(s)	125, 149, 155, 311
Mph1103I	ATGCAT	1 cut(s)	262
NdeII	GATC	2 cut(s)	90, 397
NlaIV	GGNNCC	2 cut(s)	49, 399
NsiI	ATGCAT	1 cut(s)	262
PfeI	GAWTC	2 cut(s)	135, 225
PspN4I	GGNNCC	2 cut(s)	49, 399
PsuI	RGATCY	1 cut(s)	397
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
Sau3AI	GATC	2 cut(s)	90, 397
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	3 cut(s)	121, 166, 388
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	1 cut(s)	234
SgeI	CNNG	9 cut(s)	43, 45, 51, 74, 90, 141, 159, 327, 360
Sse9I	AATT	2 cut(s)	85, 327
SsiI	CCGC	2 cut(s)	144, 395
TaaI	ACNGT	2 cut(s)	59, 182
TaqI	TCGA	3 cut(s)	189, 196, 253
TasI	AATT	2 cut(s)	85, 327
TfiI	GAWTC	2 cut(s)	135, 225
TspDTI	ATGAA	1 cut(s)	219
TspGWI	ACGGA	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	54
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.