Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003897

Physical Location & Seq

Genomic Coordinates Forward (+)

898295 .. 899425

Gene Structure 1131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000415

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTAGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACTATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGGAGCTGAGACCCTCAAGTTCAACATGGCGCTAATTCTTCTACCGGTGTGCAGAAATACAATTACTTGGCTAAGAAGCAAGACCAAGTTAGGGGGTGTAGTTCCCTTTGATGACAATATCAATTTTCACAAGTCGGGGTCGGTCTACATGCAGGTTCCCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L2

Protein Analysis

152

Amino Acids

17.09

Weight (kDa)

10.1

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L2_N	PF00181	28 - 101	2.3e-27	Ribosomal Proteins L2, RNA binding N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00830 ATCG01310
fragaria_vesca	FvH4_c3g00170
pyrus_communis	pycom12397g00040 pycom12397g00160 pycom520g00580
rosa_chinensis	RchiOBHm_Chr1g0329581 RchiOBHm_Chr2g0118521 RchiOBHm_Chr3g0480391 RchiOBHm_Chr3g0482311 RchiOBHm_CPg0502561 RchiOBHm_CPg0502581
rosa_laevigata	RLG00000000008 RLG00000000032 RLG00000000035 RLG00000000053 RLG00000000058 RLG00000000093 RLG00000000157 RLG00000000180 RLG00000000216 RLG00000000238 RLG00000000253 RLG00000000307 RLG00000000415 RLG00000037091 RLG00000037100
rosa_roxburghii	Rroxscaffold_2G00119140
rosa_rugosa	RorugMtG0002900.1 RorugMtG0003600.1 RorugMtG0003700.1
rosa_samantha	Rh1AG125100 Rh3CG278100 Rh3CG278800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	433
AccI	GTMKAC	2 cut(s)	54, 435
AciI	CCGC	1 cut(s)	144
AfiI	CCNNNNNNNGG	1 cut(s)	381
AgeI	ACCGGT	1 cut(s)	334
AgsI	TTSAA	1 cut(s)	313
AluBI	AGCT	1 cut(s)	296
AluI	AGCT	1 cut(s)	296
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	2 cut(s)	275, 293
Ama87I	CYCGRG	1 cut(s)	31
AsiGI	ACCGGT	1 cut(s)	334
AspLEI	GCGC	1 cut(s)	322
AvaI	CYCGRG	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	38
BccI	CCATC	1 cut(s)	281
BceAI	ACGGC	1 cut(s)	35
BcoDI	GTCTC	2 cut(s)	275, 293
BfmI	CTRYAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	323
BfuAI	ACCTGC	1 cut(s)	433
BmeT110I	CYCGRG	1 cut(s)	31
BmiI	GGNNCC	2 cut(s)	49, 447
BmsI	GCATC	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	290
Bsa29I	ATCGAT	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	293
BsaWI	WCCGGW	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	1 cut(s)	381
Bse118I	RCCGGY	1 cut(s)	334
Bse3DI	GCAATG	1 cut(s)	49
BseCI	ATCGAT	1 cut(s)	189
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	1 cut(s)	381
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	288
BsgI	GTGCAG	1 cut(s)	361
BshTI	ACCGGT	1 cut(s)	334
BshVI	ATCGAT	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	335
BslI	CCNNNNNNNGG	1 cut(s)	381
BsmAI	GTCTC	2 cut(s)	275, 293
Bso31I	GGTCTC	1 cut(s)	293
BsoBI	CYCGRG	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	90
BspACI	CCGC	1 cut(s)	144
BspCNI	CTCAG	1 cut(s)	289
BspDI	ATCGAT	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	49, 447
BspMI	ACCTGC	1 cut(s)	433
BspTNI	GGTCTC	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	334
BssAI	RCCGGY	1 cut(s)	334
BssMI	GATC	1 cut(s)	90
Bst4CI	ACNGT	2 cut(s)	59, 182
BstDEI	CTNAG	2 cut(s)	297, 362
BstF5I	GGATG	1 cut(s)	292
BstH2I	RGCGCY	1 cut(s)	323
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	1 cut(s)	93
BstMAI	GTCTC	2 cut(s)	275, 293
BstMBI	GATC	1 cut(s)	90
BstNSI	RCATGY	1 cut(s)	442
BstSFI	CTRYAG	1 cut(s)	234
Bsu15I	ATCGAT	1 cut(s)	189
BsuTUI	ATCGAT	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	292
BveI	ACCTGC	1 cut(s)	433
CfoI	GCGC	1 cut(s)	322
Cfr10I	RCCGGY	1 cut(s)	334
ClaI	ATCGAT	1 cut(s)	189
CseI	GACGC	1 cut(s)	161
CspAI	ACCGGT	1 cut(s)	334
CviAII	CATG	2 cut(s)	316, 439
CviJI	RGCY	3 cut(s)	50, 296, 361
CviKI_1	RGCY	3 cut(s)	50, 296, 361
DdeI	CTNAG	2 cut(s)	297, 362
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
Eco31I	GGTCTC	1 cut(s)	293
Eco88I	CYCGRG	1 cut(s)	31
EcoT22I	ATGCAT	1 cut(s)	262
FaeI	CATG	2 cut(s)	319, 442
FatI	CATG	2 cut(s)	315, 438
FblI	GTMKAC	2 cut(s)	54, 435
FokI	GGATG	1 cut(s)	299
GlaI	GCGC	1 cut(s)	321
HaeII	RGCGCY	1 cut(s)	323
HapII	CCGG	1 cut(s)	335
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	1 cut(s)	322
Hin1II	CATG	2 cut(s)	319, 442
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HinfI	GANTC	2 cut(s)	135, 225
HpaII	CCGG	1 cut(s)	335
Hpy166II	GTNNAC	2 cut(s)	55, 436
Hpy188I	TCNGA	1 cut(s)	455
Hpy8I	GTNNAC	2 cut(s)	55, 436
Hpy99I	CGWCG	1 cut(s)	201
HpyCH4III	ACNGT	2 cut(s)	59, 182
HpyCH4V	TGCA	3 cut(s)	260, 342, 442
HpyF3I	CTNAG	2 cut(s)	297, 362
Hsp92II	CATG	2 cut(s)	319, 442
HspAI	GCGC	1 cut(s)	320
Kzo9I	GATC	1 cut(s)	90
LmnI	GCTCC	2 cut(s)	47, 293
LpnPI	CCDG	4 cut(s)	132, 142, 348, 428
LweI	GCATC	1 cut(s)	112
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MboII	GAAGA	1 cut(s)	320
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	4 cut(s)	85, 324, 351, 412
MnlI	CCTC	4 cut(s)	125, 149, 155, 314
Mph1103I	ATGCAT	1 cut(s)	262
MspI	CCGG	1 cut(s)	335
NdeII	GATC	1 cut(s)	90
NlaIII	CATG	2 cut(s)	319, 442
NlaIV	GGNNCC	2 cut(s)	49, 447
NsiI	ATGCAT	1 cut(s)	262
NspI	RCATGY	1 cut(s)	442
PfeI	GAWTC	2 cut(s)	135, 225
PinAI	ACCGGT	1 cut(s)	334
PspN4I	GGNNCC	2 cut(s)	49, 447
Sau3AI	GATC	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	4 cut(s)	121, 166, 298, 447
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	4 cut(s)	85, 324, 351, 412
SsiI	CCGC	1 cut(s)	144
TaaI	ACNGT	2 cut(s)	59, 182
TaqI	TCGA	3 cut(s)	189, 196, 253
TaqII	GACCGA	1 cut(s)	421
TasI	AATT	4 cut(s)	85, 324, 351, 412
TfiI	GAWTC	2 cut(s)	135, 225
TspDTI	ATGAA	1 cut(s)	219
TspGWI	ACGGA	1 cut(s)	214
XceI	RCATGY	1 cut(s)	442
XmiI	GTMKAC	2 cut(s)	54, 435
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.