Rh3CG278100

50S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0003897
Physical Location & Seq
Forward (+)
27924265 .. 27924564
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG278100.1

Sequence Viewer

Length: 300 bp
ATGCCTTTAGGCACGGCCATACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATTGGCCACATTAAAATTACCTTTTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTAGGGTGAACCAGAAAAGTTTGGGTAAAGCCGGAGCTAAATGTTGGGGTTGTCCACGGATTCCATTATCAAGAAGTGTATCCACAGCTTCTTGTACCAATTTCTCCTGA

Protein Analysis

99

Amino Acids

10.19

Weight (kDa)

10.32

Isoelectric Point (pI)

31.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L2_C PF03947 1 - 91 3.9e-28 Ribosomal Proteins L2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 62
Acc36I ACCTGC 1 cut(s) 62
AcoI YGGCCR 2 cut(s) 15, 111
AfaI GTAC 1 cut(s) 286
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
AluBI AGCT 3 cut(s) 62, 227, 278
AluI AGCT 3 cut(s) 62, 227, 278
AlwNI CAGNNNCTG 1 cut(s) 77
AoxI GGCC 2 cut(s) 15, 111
ApeKI GCWGC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 208
AvaII GGWCC 1 cut(s) 139
BalI TGGCCA 1 cut(s) 113
BbvI GCAGC 1 cut(s) 80
BceAI ACGGC 1 cut(s) 30
BciVI GTATCC 1 cut(s) 280
BfaI CTAG 1 cut(s) 63
BfmI CTRYAG 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 62
BfuI GTATCC 1 cut(s) 280
BisI GCNGC 1 cut(s) 69
BlpI GCTNAGC 1 cut(s) 163
BlsI GCNGC 1 cut(s) 70
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 139
Bpu1102I GCTNAGC 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 245
BseMII CTCAG 1 cut(s) 177
BseXI GCAGC 1 cut(s) 80
BshFI GGCC 2 cut(s) 17, 113
BsiSI CCGG 1 cut(s) 222
BsnI GGCC 2 cut(s) 17, 113
Bsp1720I GCTNAGC 1 cut(s) 163
BspANI GGCC 2 cut(s) 17, 113
BspCNI CTCAG 1 cut(s) 176
BspMI ACCTGC 1 cut(s) 62
BssECI CCNNGG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 172
BstAPI GCANNNNNTGC 1 cut(s) 74
BstDEI CTNAG 1 cut(s) 163
BstDSI CCRYGG 1 cut(s) 245
BstMWI GCNNNNNNNGC 2 cut(s) 68, 74
BstSFI CTRYAG 1 cut(s) 78
BstV1I GCAGC 1 cut(s) 80
BsuI GTATCC 1 cut(s) 280
BsuRI GGCC 2 cut(s) 17, 113
BtgI CCRYGG 1 cut(s) 245
BveI ACCTGC 1 cut(s) 62
CaiI CAGNNNCTG 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 139
Csp6I GTAC 1 cut(s) 285
CviJI RGCY 6 cut(s) 17, 62, 113, 221, 227, 278
CviKI_1 RGCY 6 cut(s) 17, 62, 113, 221, 227, 278
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 1 cut(s) 163
EaeI YGGCCR 2 cut(s) 15, 111
Eco32I GATATC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 139
EcoRV GATATC 1 cut(s) 150
FaiI YATR 3 cut(s) 20, 24, 29
Fnu4HI GCNGC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 1 cut(s) 63
GluI GCNGC 1 cut(s) 69
HaeIII GGCC 2 cut(s) 17, 113
HapII CCGG 1 cut(s) 222
HinfI GANTC 1 cut(s) 250
HpaII CCGG 1 cut(s) 222
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 3 cut(s) 53, 199, 245
Hpy188I TCNGA 1 cut(s) 176
Hpy188III TCNNGA 2 cut(s) 261, 297
Hpy8I GTNNAC 3 cut(s) 53, 199, 245
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4V TGCA 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 74
HpyF3I CTNAG 1 cut(s) 163
LmnI GCTCC 1 cut(s) 224
LpnPI CCDG 3 cut(s) 57, 215, 235
Lsp1109I GCAGC 1 cut(s) 80
MaeI CTAG 1 cut(s) 63
MlsI TGGCCA 1 cut(s) 113
MluCI AATT 5 cut(s) 56, 107, 122, 157, 289
MluNI TGGCCA 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 2 cut(s) 94, 130
Mox20I TGGCCA 1 cut(s) 113
MscI TGGCCA 1 cut(s) 113
MseI TTAA 1 cut(s) 119
Msp20I TGGCCA 1 cut(s) 113
MspI CCGG 1 cut(s) 222
MwoI GCNNNNNNNGC 2 cut(s) 68, 74
PaqCI CACCTGC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 250
PkrI GCNGC 1 cut(s) 70
PspPI GGNCC 1 cut(s) 139
PstNI CAGNNNCTG 1 cut(s) 77
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
SaqAI TTAA 1 cut(s) 119
SatI GCNGC 1 cut(s) 69
Sau96I GGNCC 1 cut(s) 139
SetI ASST 6 cut(s) 64, 76, 130, 141, 229, 280
SfcI CTRYAG 1 cut(s) 78
SinI GGWCC 1 cut(s) 139
Sse9I AATT 5 cut(s) 56, 107, 122, 157, 289
SspMI CTAG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 172
TasI AATT 5 cut(s) 56, 107, 122, 157, 289
TfiI GAWTC 1 cut(s) 250
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TseI GCWGC 1 cut(s) 68
TspGWI ACGGA 2 cut(s) 131, 262
VpaK11BI GGWCC 1 cut(s) 139
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.