Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012397

Orthogroup ID

OG0003897

Physical Location & Seq

Genomic Coordinates Reverse (-)

25613 .. 26720

Gene Structure 1108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12397g00040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACTATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAATGCCCTTAGGCACGGCCATACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L2

Protein Analysis

139

Amino Acids

15.47

Weight (kDa)

10.21

Isoelectric Point (pI)

33.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L2_N	PF00181	28 - 116	4.4e-35	Ribosomal Proteins L2, RNA binding N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00830 ATCG01310
fragaria_vesca	FvH4_c3g00170
pyrus_communis	pycom12397g00040 pycom12397g00160 pycom520g00580
rosa_chinensis	RchiOBHm_Chr1g0329581 RchiOBHm_Chr2g0118521 RchiOBHm_Chr3g0480391 RchiOBHm_Chr3g0482311 RchiOBHm_CPg0502561 RchiOBHm_CPg0502581
rosa_laevigata	RLG00000000008 RLG00000000032 RLG00000000035 RLG00000000053 RLG00000000058 RLG00000000093 RLG00000000157 RLG00000000180 RLG00000000216 RLG00000000238 RLG00000000253 RLG00000000307 RLG00000000415 RLG00000037091 RLG00000037100
rosa_roxburghii	Rroxscaffold_2G00119140
rosa_rugosa	RorugMtG0002900.1 RorugMtG0003600.1 RorugMtG0003700.1
rosa_samantha	Rh1AG125100 Rh3CG278100 Rh3CG278800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	54
AciI	CCGC	1 cut(s)	144
AcoI	YGGCCR	1 cut(s)	406
AfaI	GTAC	1 cut(s)	352
AgsI	TTSAA	1 cut(s)	391
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	275
Ama87I	CYCGRG	1 cut(s)	31
AoxI	GGCC	1 cut(s)	406
AsuHPI	GGTGA	1 cut(s)	302
AvaI	CYCGRG	1 cut(s)	31
AxyI	CCTNAGG	1 cut(s)	398
BaeI	ACNNNNGTAYC	4 cut(s)	327, 342, 360, 375
Bbv12I	GWGCWC	1 cut(s)	38
BccI	CCATC	1 cut(s)	281
BceAI	ACGGC	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	275
BfmI	CTRYAG	1 cut(s)	234
BmeT110I	CYCGRG	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	49
BmsI	GCATC	1 cut(s)	112
Bsa29I	ATCGAT	1 cut(s)	189
Bse21I	CCTNAGG	1 cut(s)	398
Bse3DI	GCAATG	1 cut(s)	49
BseCI	ATCGAT	1 cut(s)	189
BseGI	GGATG	2 cut(s)	292, 310
BseMI	GCAATG	1 cut(s)	49
BshFI	GGCC	1 cut(s)	408
BshVI	ATCGAT	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	31
BsmAI	GTCTC	1 cut(s)	275
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	1 cut(s)	408
BsoBI	CYCGRG	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	90
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	1 cut(s)	408
BspDI	ATCGAT	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	49
BssMI	GATC	1 cut(s)	90
Bst4CI	ACNGT	2 cut(s)	59, 182
BstDEI	CTNAG	1 cut(s)	398
BstF5I	GGATG	2 cut(s)	292, 310
BstKTI	GATC	1 cut(s)	93
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	1 cut(s)	90
BstSFI	CTRYAG	1 cut(s)	234
Bsu15I	ATCGAT	1 cut(s)	189
Bsu36I	CCTNAGG	1 cut(s)	398
BsuRI	GGCC	1 cut(s)	408
BsuTUI	ATCGAT	1 cut(s)	189
BtsCI	GGATG	2 cut(s)	292, 310
ClaI	ATCGAT	1 cut(s)	189
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	351
CviJI	RGCY	3 cut(s)	50, 323, 408
CviKI_1	RGCY	3 cut(s)	50, 323, 408
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	1 cut(s)	398
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
EaeI	YGGCCR	1 cut(s)	406
Eco81I	CCTNAGG	1 cut(s)	398
Eco88I	CYCGRG	1 cut(s)	31
EcoT22I	ATGCAT	1 cut(s)	262
FblI	GTMKAC	1 cut(s)	54
FokI	GGATG	2 cut(s)	297, 299
HaeIII	GGCC	1 cut(s)	408
HgaI	GACGC	1 cut(s)	161
HinfI	GANTC	2 cut(s)	135, 225
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	1 cut(s)	55
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	201
HpyCH4III	ACNGT	2 cut(s)	59, 182
HpyCH4V	TGCA	1 cut(s)	260
HpyF3I	CTNAG	1 cut(s)	398
Kzo9I	GATC	1 cut(s)	90
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	4 cut(s)	132, 142, 328, 333
LweI	GCATC	1 cut(s)	112
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	2 cut(s)	85, 327
MnlI	CCTC	4 cut(s)	125, 149, 155, 311
Mph1103I	ATGCAT	1 cut(s)	262
MslI	CAYNNNNRTG	1 cut(s)	108
Mva1269I	GAATGC	1 cut(s)	397
NdeII	GATC	1 cut(s)	90
NlaIV	GGNNCC	1 cut(s)	49
NsiI	ATGCAT	1 cut(s)	262
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	2 cut(s)	135, 225
PspN4I	GGNNCC	1 cut(s)	49
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
RseI	CAYNNNNRTG	1 cut(s)	108
Sau3AI	GATC	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	3 cut(s)	121, 166, 388
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	1 cut(s)	234
SgeI	CNNG	9 cut(s)	43, 45, 51, 74, 90, 141, 159, 327, 360
SmiMI	CAYNNNNRTG	1 cut(s)	108
Sse9I	AATT	2 cut(s)	85, 327
SsiI	CCGC	1 cut(s)	144
TaaI	ACNGT	2 cut(s)	59, 182
TaqI	TCGA	3 cut(s)	189, 196, 253
TasI	AATT	2 cut(s)	85, 327
TfiI	GAWTC	2 cut(s)	135, 225
TspDTI	ATGAA	1 cut(s)	219
TspGWI	ACGGA	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	54
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.