ATMG00285

ATP synthesis coupled electron transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Mt
OG0015812
Physical Location & Seq
Reverse (-)
79740 .. 81297
1558 bp
Loading structure...
UTR
Exon/CDS
Intron
ATMG00285.1

Sequence Viewer

Length: 578 bp
ATGAAAGCAGAATTCGTTCGGATCCTCCCACACATGTTCAATCTTTTTTTAGCGGTTTCCCCAGAGATCTTTATCATTAATGCAACCTCCATTTTGCTCATTCATGGAGTTGTATTTAGTACCTCTAAGAAATATGATTATCCGCCGTTAGCCAGTAATGTGGGTTGGCTTGGATTACTTAGTGTTCTAATAACCTTGCTTCTGCTCGCCGCTGGCGCACCTCTCCTAACTATTGCCCATTTATTCTGGAATAATCTTTTTAGGAGGGACAATTTTACATATTTCTGCCAAATCTTTCTATTATTAAGTACGGCTGGTACCATTTCGATGTGTTTCGATTCTTCCGACCAAGAGAGGTTTGATGCTTTTGAATTCATTGTATTAATTCCACTTCCTACTCGCGGTATGCTCTTTATGATCTCGGCTCATGATTTAATTGCCATGTATTTAGCTATTGAGCCTCAAAGTTTATGTTTTTATGTAATCGCAGCATCAAAAAGAAAGTCTGAATTTTCCACGGAAGCCGGCTCGAAATATTTGATCTTAGGTGCATTTTCCTCTGGAATATTATTGTTTGG

Protein Analysis

192

Amino Acids

21.49

Weight (kDa)

6.4

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proton_antipo_M PF00361 142 - 192 1.8e-11 NADH:quinone oxidoreductase/Mrp antiporter, TM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015812)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00285
fragaria_vesca FvH4_c1g00520
rosa_chinensis RchiOBHm_MTg0499211
rosa_laevigata RLG00000000016 RLG00000000081 RLG00000000123 RLG00000000367 RLG00000017272
rosa_multiflora Rmu_sc0000486.1_g000004
rosa_roxburghii Rroxscaffold_2G00119530 Rroxscaffold_2G00119540 Rroxscaffold_6G00392870
rosa_samantha Rh2BG107500 Rh2CG109300
rosa_wichuraiana Rw3G029490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 317
AccB1I GGYRCC 1 cut(s) 317
AccII CGCG 1 cut(s) 402
AciI CCGC 4 cut(s) 53, 143, 210, 402
AclWI GGATC 2 cut(s) 16, 29
AcsI RAATTY 3 cut(s) 11, 371, 509
AfaI GTAC 3 cut(s) 121, 310, 319
AfiI CCNNNNNNNGG 1 cut(s) 401
AflIII ACRYGT 1 cut(s) 33
AgsI TTSAA 2 cut(s) 40, 371
AluBI AGCT 1 cut(s) 452
AluI AGCT 1 cut(s) 452
AlwI GGATC 2 cut(s) 16, 29
ApeKI GCWGC 1 cut(s) 488
ApoI RAATTY 3 cut(s) 11, 371, 509
ArsI GACNNNNNNTTYG 2 cut(s) 488, 520
AseI ATTAAT 2 cut(s) 78, 383
Asp700I GAANNNNTTC 1 cut(s) 15
Asp718I GGTACC 1 cut(s) 317
AspLEI GCGC 1 cut(s) 218
BamHI GGATCC 1 cut(s) 21
BanI GGYRCC 1 cut(s) 317
BbvI GCAGC 1 cut(s) 500
BceAI ACGGC 2 cut(s) 130, 327
BglII AGATCT 1 cut(s) 66
BisI GCNGC 2 cut(s) 210, 489
BlsI GCNGC 2 cut(s) 211, 490
BmiI GGNNCC 2 cut(s) 23, 319
BmsI GCATC 2 cut(s) 352, 500
BsaBI GATNNNNATC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 516
Bsc4I CCNNNNNNNGG 1 cut(s) 401
Bse118I RCCGGY 1 cut(s) 524
Bse1I ACTGG 1 cut(s) 153
Bse8I GATNNNNATC 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 516
BseJI GATNNNNATC 1 cut(s) 71
BseLI CCNNNNNNNGG 1 cut(s) 401
BseNI ACTGG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 500
Bsh1236I CGCG 1 cut(s) 402
BshNI GGYRCC 1 cut(s) 317
BsiSI CCGG 1 cut(s) 525
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 1 cut(s) 401
BsmFI GGGAC 1 cut(s) 281
Bsp143I GATC 4 cut(s) 21, 66, 417, 540
BspACI CCGC 4 cut(s) 53, 143, 210, 402
BspFNI CGCG 1 cut(s) 402
BspHI TCATGA 1 cut(s) 427
BspLI GGNNCC 2 cut(s) 23, 319
BspPI GGATC 2 cut(s) 16, 29
BspT107I GGYRCC 1 cut(s) 317
BsrFI RCCGGY 1 cut(s) 524
BsrI ACTGG 1 cut(s) 153
BssAI RCCGGY 1 cut(s) 524
BssECI CCNNGG 1 cut(s) 516
BssMI GATC 4 cut(s) 21, 66, 417, 540
BstC8I GCNNGC 3 cut(s) 207, 214, 526
BstDEI CTNAG 3 cut(s) 126, 179, 544
BstDSI CCRYGG 1 cut(s) 516
BstFNI CGCG 1 cut(s) 402
BstHHI GCGC 1 cut(s) 218
BstKTI GATC 4 cut(s) 24, 69, 420, 543
BstMBI GATC 4 cut(s) 21, 66, 417, 540
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNSI RCATGY 1 cut(s) 37
BstUI CGCG 1 cut(s) 402
BstV1I GCAGC 1 cut(s) 500
BstX2I RGATCY 2 cut(s) 21, 66
BstXI CCANNNNNNTGG 1 cut(s) 160
BstYI RGATCY 2 cut(s) 21, 66
BtgI CCRYGG 1 cut(s) 516
Cac8I GCNNGC 3 cut(s) 207, 214, 526
CciI TCATGA 1 cut(s) 427
CfoI GCGC 1 cut(s) 218
Cfr10I RCCGGY 1 cut(s) 524
Csp6I GTAC 3 cut(s) 120, 309, 318
CviAII CATG 4 cut(s) 34, 104, 428, 442
CviJI RGCY 8 cut(s) 152, 169, 314, 425, 452, 460, 524, 528
CviKI_1 RGCY 8 cut(s) 152, 169, 314, 425, 452, 460, 524, 528
CviQI GTAC 3 cut(s) 120, 309, 318
DdeI CTNAG 3 cut(s) 126, 179, 544
DpnI GATC 4 cut(s) 23, 68, 419, 542
DpnII GATC 4 cut(s) 21, 66, 417, 540
EciI GGCGGA 1 cut(s) 132
EcoRI GAATTC 2 cut(s) 11, 371
FaeI CATG 4 cut(s) 37, 107, 431, 445
FaqI GGGAC 1 cut(s) 281
FatI CATG 4 cut(s) 33, 103, 427, 441
Fnu4HI GCNGC 2 cut(s) 210, 489
Fsp4HI GCNGC 2 cut(s) 210, 489
GlaI GCGC 1 cut(s) 217
GluI GCNGC 2 cut(s) 210, 489
HapII CCGG 1 cut(s) 525
HhaI GCGC 1 cut(s) 218
Hin1II CATG 4 cut(s) 37, 107, 431, 445
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HinfI GANTC 1 cut(s) 338
HpaII CCGG 1 cut(s) 525
Hpy188I TCNGA 3 cut(s) 21, 346, 508
Hpy188III TCNNGA 3 cut(s) 247, 428, 561
HpyCH4V TGCA 2 cut(s) 83, 551
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 3 cut(s) 126, 179, 544
Hsp92II CATG 4 cut(s) 37, 107, 431, 445
HspAI GCGC 1 cut(s) 216
KpnI GGTACC 1 cut(s) 321
KroI GCCGGC 1 cut(s) 524
KroNI GCCGGC 1 cut(s) 526
Kzo9I GATC 4 cut(s) 21, 66, 417, 540
LpnPI CCDG 7 cut(s) 75, 166, 198, 232, 300, 538, 546
Lsp1109I GCAGC 1 cut(s) 500
LweI GCATC 2 cut(s) 352, 500
MalI GATC 4 cut(s) 23, 68, 419, 542
MboI GATC 4 cut(s) 21, 66, 417, 540
MboII GAAGA 1 cut(s) 333
MflI RGATCY 2 cut(s) 21, 66
MluCI AATT 6 cut(s) 11, 271, 371, 384, 435, 509
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 8 cut(s) 35, 97, 133, 231, 258, 348, 471, 568
MroNI GCCGGC 1 cut(s) 524
MroXI GAANNNNTTC 1 cut(s) 15
MseI TTAA 4 cut(s) 78, 305, 383, 434
MslI CAYNNNNRTG 1 cut(s) 326
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 1 cut(s) 525
MvnI CGCG 1 cut(s) 402
MwoI GCNNNNNNNGC 1 cut(s) 215
NaeI GCCGGC 1 cut(s) 526
NdeII GATC 4 cut(s) 21, 66, 417, 540
NgoMIV GCCGGC 1 cut(s) 524
NlaIII CATG 4 cut(s) 37, 107, 431, 445
NlaIV GGNNCC 2 cut(s) 23, 319
NmeAIII GCCGAG 1 cut(s) 401
NspI RCATGY 1 cut(s) 37
PagI TCATGA 1 cut(s) 427
PciI ACATGT 1 cut(s) 33
PcsI WCGNNNNNNNCGW 1 cut(s) 342
PdiI GCCGGC 1 cut(s) 526
PdmI GAANNNNTTC 1 cut(s) 15
PfeI GAWTC 1 cut(s) 338
PkrI GCNGC 2 cut(s) 211, 490
PscI ACATGT 1 cut(s) 33
PshBI ATTAAT 2 cut(s) 78, 383
PspN4I GGNNCC 2 cut(s) 23, 319
PsuI RGATCY 2 cut(s) 21, 66
RsaI GTAC 3 cut(s) 121, 310, 319
RsaNI GTAC 3 cut(s) 120, 309, 318
RseI CAYNNNNRTG 1 cut(s) 326
SaqAI TTAA 4 cut(s) 78, 305, 383, 434
SatI GCNGC 2 cut(s) 210, 489
Sau3AI GATC 4 cut(s) 21, 66, 417, 540
SetI ASST 7 cut(s) 89, 125, 197, 223, 359, 454, 550
SfaNI GCATC 2 cut(s) 352, 500
SmiMI CAYNNNNRTG 1 cut(s) 326
Sse9I AATT 6 cut(s) 11, 271, 371, 384, 435, 509
SsiI CCGC 4 cut(s) 53, 143, 210, 402
SspI AATATT 2 cut(s) 536, 567
TaqI TCGA 3 cut(s) 326, 336, 530
TasI AATT 6 cut(s) 11, 271, 371, 384, 435, 509
TauI GCSGC 1 cut(s) 212
TfiI GAWTC 1 cut(s) 338
Tru1I TTAA 4 cut(s) 78, 305, 383, 434
Tru9I TTAA 4 cut(s) 78, 305, 383, 434
TseI GCWGC 1 cut(s) 488
TspDTI ATGAA 3 cut(s) 17, 92, 364
TspGWI ACGGA 1 cut(s) 533
VspI ATTAAT 2 cut(s) 78, 383
XapI RAATTY 3 cut(s) 11, 371, 509
XceI RCATGY 1 cut(s) 37
XmnI GAANNNNTTC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.