Rroxscaffold_2G00119530

ATP synthase protein YMF19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015812
Physical Location & Seq
Forward (+)
51352014 .. 51352908
895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00119530.1

Sequence Viewer

Length: 825 bp
ATGCCTCAACTGGATAAATTCACTTATTTCACACAATTCTTCTGGTCATGCCTTTTCCTCTTTACTTTCTATATTCCCATATGCAATGATGGAGATGGATTCCTTGGGATCAGCAGAATTCTAAAACTACGGAACCGACTGGTTTCACAGCGGGGGAACAACACCCGGAGCAACGACCCCAACAGTTTGGAAGAGATTTTGAGAAAAGGTTTTAGTACCGGTGGAAGAAATTATTGGGAAAAGGGAAGAAATTATTGGGAAAAGGGAAGAAAATGCGCTGGGACTACTCCAGTTTATTTGAAGTCGCAAAATGGTGTAACGCCATTTTCCGGCGCTTTCTCTTCCTTTCTTTCCTCGCAAAGGGGCTGTGTGCCCTTTTCTCGACTTTTTTTTCCTTCTTTTGTCGCCGGAATGGAGCGGGTGGGAACTCATTCCGGCGGCCGTGCACCCATCTCTCTATCTTTCAATCGGCCCGGGATTGGGTCCGGACGCCCCCCAGCGCCGGCCCCGGCGGTTATTCCCGATTTGAACGGGGCTCCGCCGCCGCTCATTCCGGATCTTAATGCCCCGGATGAGGCGGGGCTTGCGGAAGAGATAGAGGCAACCCGGGCGGAGCTCAGAGACACCCAGGAAGCGTTGGAGCGCCAGGAGGCGGAACTGAGCGCTTTCGAAGCTCAGCTCAATCATGAACGGGAACAAAGTGAAAAACTGGAACGTGAGTTCCAGGCTCTCACGGCCCGAATCGAATGGCAAGAGGAAAGGCAAGCTTTGTTGCTGCAGCAGCTAGCTCAGGCTAGTGGGGGCGCGCTTAGCGAAAGTCCTTAG

Protein Analysis

274

Amino Acids

30.48

Weight (kDa)

5.89

Isoelectric Point (pI)

49.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YMF19 PF02326 2 - 72 3.8e-21 Plant ATP synthase F0
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015812)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00285
fragaria_vesca FvH4_c1g00520
rosa_chinensis RchiOBHm_MTg0499211
rosa_laevigata RLG00000000016 RLG00000000081 RLG00000000123 RLG00000000367 RLG00000017272
rosa_multiflora Rmu_sc0000486.1_g000004
rosa_roxburghii Rroxscaffold_2G00119530 Rroxscaffold_2G00119540 Rroxscaffold_6G00392870
rosa_samantha Rh2BG107500 Rh2CG109300
rosa_wichuraiana Rw3G029490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 418, 547
AccII CGCG 1 cut(s) 806
AccIII TCCGGA 2 cut(s) 485, 553
AclWI GGATC 2 cut(s) 116, 564
AcoI YGGCCR 1 cut(s) 439
AcsI RAATTY 2 cut(s) 17, 117
AcyI GRCGYC 1 cut(s) 490
AfaI GTAC 1 cut(s) 217
AfeI AGCGCT 1 cut(s) 664
AfiI CCNNNNNNNGG 7 cut(s) 329, 360, 479, 480, 502, 574, 652
AgeI ACCGGT 1 cut(s) 218
AgsI TTSAA 3 cut(s) 301, 466, 529
AjnI CCWGG 3 cut(s) 627, 645, 723
AjuI GAANNNNNNNTTGG 4 cut(s) 217, 238, 249, 270
AloI GAACNNNNNNTCC 4 cut(s) 704, 705, 736, 737
AluBI AGCT 6 cut(s) 616, 674, 679, 767, 784, 788
AluI AGCT 6 cut(s) 616, 674, 679, 767, 784, 788
Alw21I GWGCWC 2 cut(s) 448, 618
Alw26I GTCTC 1 cut(s) 615
Alw44I GTGCAC 1 cut(s) 444
AlwI GGATC 2 cut(s) 116, 564
Ama87I CYCGRG 2 cut(s) 473, 606
Aor13HI TCCGGA 2 cut(s) 485, 553
Aor51HI AGCGCT 1 cut(s) 664
AoxI GGCC 4 cut(s) 439, 470, 504, 735
ApaLI GTGCAC 1 cut(s) 444
ApeKI GCWGC 3 cut(s) 775, 778, 781
ApoI RAATTY 2 cut(s) 17, 117
AsiGI ACCGGT 1 cut(s) 218
Asp700I GAANNNNTTC 1 cut(s) 430
AspLEI GCGC 7 cut(s) 278, 335, 502, 645, 665, 806, 808
AspS9I GGNCC 4 cut(s) 471, 483, 505, 736
AsuC2I CCSGG 7 cut(s) 166, 474, 475, 509, 569, 607, 608
AsuII TTCGAA 1 cut(s) 669
AsuNHI GCTAGC 1 cut(s) 784
AvaI CYCGRG 2 cut(s) 473, 606
AvaII GGWCC 1 cut(s) 483
BaeGI GKGCMC 2 cut(s) 375, 448
BanII GRGCYC 2 cut(s) 538, 618
Bbv12I GWGCWC 2 cut(s) 448, 618
BbvI GCAGC 3 cut(s) 762, 790, 793
BccI CCATC 3 cut(s) 83, 89, 458
BceAI ACGGC 2 cut(s) 426, 750
BciT130I CCWGG 3 cut(s) 629, 647, 725
BcnI CCSGG 7 cut(s) 166, 474, 475, 509, 569, 607, 608
BcoDI GTCTC 1 cut(s) 615
BfaI CTAG 2 cut(s) 785, 795
BfmI CTRYAG 1 cut(s) 776
BfoI RGCGCY 4 cut(s) 336, 503, 646, 666
BisI GCNGC 6 cut(s) 439, 542, 545, 776, 779, 782
BlpI GCTNAGC 2 cut(s) 675, 809
BlsI GCNGC 6 cut(s) 440, 543, 546, 777, 780, 783
Bme18I GGWCC 1 cut(s) 483
BmeT110I CYCGRG 2 cut(s) 473, 606
BmgT120I GGNCC 4 cut(s) 471, 483, 505, 736
BmiI GGNNCC 4 cut(s) 134, 484, 507, 537
BmtI GCTAGC 1 cut(s) 788
BpmI CTGGAG 1 cut(s) 273
Bpu10I CCTNAGC 1 cut(s) 789
Bpu1102I GCTNAGC 2 cut(s) 675, 809
Bpu14I TTCGAA 1 cut(s) 669
BpuMI CCSGG 7 cut(s) 166, 474, 475, 509, 569, 607, 608
BsaHI GRCGYC 1 cut(s) 490
BsaJI CCNNGG 6 cut(s) 103, 473, 507, 567, 606, 627
BsaWI WCCGGW 3 cut(s) 218, 485, 553
Bsc4I CCNNNNNNNGG 7 cut(s) 329, 360, 479, 480, 502, 574, 652
Bse118I RCCGGY 2 cut(s) 218, 502
Bse1I ACTGG 4 cut(s) 15, 144, 290, 714
Bse3DI GCAATG 1 cut(s) 91
BseAI TCCGGA 2 cut(s) 485, 553
BseBI CCWGG 3 cut(s) 629, 647, 725
BseDI CCNNGG 6 cut(s) 103, 473, 507, 567, 606, 627
BseGI GGATG 1 cut(s) 577
BseLI CCNNNNNNNGG 7 cut(s) 329, 360, 479, 480, 502, 574, 652
BseMI GCAATG 1 cut(s) 91
BseMII CTCAG 4 cut(s) 631, 650, 689, 803
BseNI ACTGG 4 cut(s) 15, 144, 290, 714
BsePI GCGCGC 1 cut(s) 804
BseSI GKGCMC 2 cut(s) 375, 448
BseX3I CGGCCG 1 cut(s) 439
BseXI GCAGC 3 cut(s) 762, 790, 793
BseYI CCCAGC 2 cut(s) 278, 496
Bsh1236I CGCG 1 cut(s) 806
Bsh1285I CGRYCG 1 cut(s) 442
BshFI GGCC 4 cut(s) 441, 472, 506, 737
BshTI ACCGGT 1 cut(s) 218
BsiEI CGRYCG 1 cut(s) 442
BsiHKAI GWGCWC 2 cut(s) 448, 618
BsiHKCI CYCGRG 2 cut(s) 473, 606
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 7 cut(s) 329, 360, 479, 480, 502, 574, 652
BsmAI GTCTC 1 cut(s) 615
BsmFI GGGAC 1 cut(s) 295
BsnI GGCC 4 cut(s) 441, 472, 506, 737
BsoBI CYCGRG 2 cut(s) 473, 606
Bsp119I TTCGAA 1 cut(s) 669
Bsp1286I GDGCHC 4 cut(s) 375, 448, 538, 618
Bsp13I TCCGGA 2 cut(s) 485, 553
Bsp143I GATC 2 cut(s) 108, 556
Bsp1720I GCTNAGC 2 cut(s) 675, 809
BspANI GGCC 4 cut(s) 441, 472, 506, 737
BspCNI CTCAG 4 cut(s) 630, 651, 688, 802
BspEI TCCGGA 2 cut(s) 485, 553
BspFNI CGCG 1 cut(s) 806
BspHI TCATGA 1 cut(s) 685
BspLI GGNNCC 4 cut(s) 134, 484, 507, 537
BspMAI CTGCAG 1 cut(s) 780
BspOI GCTAGC 1 cut(s) 788
BspPI GGATC 2 cut(s) 116, 564
BspT104I TTCGAA 1 cut(s) 669
BsrBI CCGCTC 2 cut(s) 418, 547
BsrDI GCAATG 1 cut(s) 91
BsrFI RCCGGY 2 cut(s) 218, 502
BsrI ACTGG 4 cut(s) 15, 144, 290, 714
BssAI RCCGGY 2 cut(s) 218, 502
BssECI CCNNGG 6 cut(s) 103, 473, 507, 567, 606, 627
BssHII GCGCGC 1 cut(s) 804
BssMI GATC 2 cut(s) 108, 556
BssNI GRCGYC 1 cut(s) 490
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 3 cut(s) 629, 647, 725
Bst4CI ACNGT 1 cut(s) 185
Bst6I CTCTTC 3 cut(s) 186, 346, 585
BstACI GRCGYC 1 cut(s) 490
BstBI TTCGAA 1 cut(s) 669
BstC8I GCNNGC 5 cut(s) 504, 585, 765, 786, 806
BstDEI CTNAG 6 cut(s) 617, 659, 675, 789, 809, 822
BstENI CCTNNNNNAGG 1 cut(s) 358
BstF5I GGATG 1 cut(s) 577
BstFNI CGCG 1 cut(s) 806
BstH2I RGCGCY 4 cut(s) 336, 503, 646, 666
BstHHI GCGC 7 cut(s) 278, 335, 502, 645, 665, 806, 808
BstKTI GATC 2 cut(s) 111, 559
BstMAI GTCTC 1 cut(s) 615
BstMBI GATC 2 cut(s) 108, 556
BstMCI CGRYCG 1 cut(s) 442
BstMWI GCNNNNNNNGC 6 cut(s) 584, 608, 671, 734, 781, 810
BstNI CCWGG 3 cut(s) 629, 647, 725
BstSFI CTRYAG 1 cut(s) 776
BstSLI GKGCMC 2 cut(s) 375, 448
BstUI CGCG 1 cut(s) 806
BstV1I GCAGC 3 cut(s) 762, 790, 793
BstX2I RGATCY 1 cut(s) 556
BstXI CCANNNNNNTGG 1 cut(s) 187
BstYI RGATCY 1 cut(s) 556
BstZI CGGCCG 1 cut(s) 439
BsuRI GGCC 4 cut(s) 441, 472, 506, 737
BtsCI GGATG 1 cut(s) 577
Cac8I GCNNGC 5 cut(s) 504, 585, 765, 786, 806
CciI TCATGA 1 cut(s) 685
CfoI GCGC 7 cut(s) 278, 335, 502, 645, 665, 806, 808
Cfr10I RCCGGY 2 cut(s) 218, 502
Cfr13I GGNCC 4 cut(s) 471, 483, 505, 736
Cfr9I CCCGGG 2 cut(s) 473, 606
CseI GACGC 1 cut(s) 498
Csp6I GTAC 1 cut(s) 216
CspAI ACCGGT 1 cut(s) 218
CviAII CATG 2 cut(s) 48, 686
CviQI GTAC 1 cut(s) 216
DdeI CTNAG 6 cut(s) 617, 659, 675, 789, 809, 822
DpnI GATC 2 cut(s) 110, 558
DpnII GATC 2 cut(s) 108, 556
EaeI YGGCCR 1 cut(s) 439
EagI CGGCCG 1 cut(s) 439
Eam1104I CTCTTC 3 cut(s) 186, 346, 585
EarI CTCTTC 3 cut(s) 186, 346, 585
EciI GGCGGA 3 cut(s) 528, 626, 668
Ecl136II GAGCTC 1 cut(s) 616
EclXI CGGCCG 1 cut(s) 439
Eco130I CCWWGG 1 cut(s) 103
Eco24I GRGCYC 2 cut(s) 538, 618
Eco47I GGWCC 1 cut(s) 483
Eco47III AGCGCT 1 cut(s) 664
Eco52I CGGCCG 1 cut(s) 439
Eco53kI GAGCTC 1 cut(s) 616
Eco88I CYCGRG 2 cut(s) 473, 606
EcoICRI GAGCTC 1 cut(s) 616
EcoNI CCTNNNNNAGG 1 cut(s) 358
EcoRI GAATTC 1 cut(s) 117
EcoRII CCWGG 3 cut(s) 627, 645, 723
EcoT14I CCWWGG 1 cut(s) 103
EcoT38I GRGCYC 2 cut(s) 538, 618
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 2 cut(s) 51, 689
FaiI YATR 5 cut(s) 49, 72, 80, 82, 687
FalI AAGNNNNNCTT 2 cut(s) 751, 783
FaqI GGGAC 1 cut(s) 295
FatI CATG 2 cut(s) 47, 685
FauI CCCGC 3 cut(s) 144, 411, 571
FauNDI CATATG 1 cut(s) 80
Fnu4HI GCNGC 6 cut(s) 439, 542, 545, 776, 779, 782
FokI GGATG 1 cut(s) 584
FriOI GRGCYC 2 cut(s) 538, 618
Fsp4HI GCNGC 6 cut(s) 439, 542, 545, 776, 779, 782
FspBI CTAG 2 cut(s) 785, 795
GlaI GCGC 7 cut(s) 277, 334, 501, 644, 664, 805, 807
GluI GCNGC 6 cut(s) 439, 542, 545, 776, 779, 782
GsaI CCCAGC 2 cut(s) 282, 500
GsuI CTGGAG 1 cut(s) 273
HaeII RGCGCY 4 cut(s) 336, 503, 646, 666
HaeIII GGCC 4 cut(s) 441, 472, 506, 737
HgaI GACGC 1 cut(s) 498
HhaI GCGC 7 cut(s) 278, 335, 502, 645, 665, 806, 808
Hin1I GRCGYC 1 cut(s) 490
Hin1II CATG 2 cut(s) 51, 689
Hin6I GCGC 7 cut(s) 276, 333, 500, 643, 663, 804, 806
HinP1I GCGC 7 cut(s) 276, 333, 500, 643, 663, 804, 806
HindIII AAGCTT 1 cut(s) 765
HinfI GANTC 2 cut(s) 99, 741
Hpy166II GTNNAC 1 cut(s) 446
Hpy188I TCNGA 1 cut(s) 620
Hpy188III TCNNGA 5 cut(s) 381, 486, 521, 554, 686
Hpy8I GTNNAC 1 cut(s) 446
HpyAV CCTTC 1 cut(s) 405
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4IV ACGT 1 cut(s) 715
HpyCH4V TGCA 3 cut(s) 84, 446, 778
HpyF10VI GCNNNNNNNGC 6 cut(s) 584, 608, 671, 734, 781, 810
HpyF3I CTNAG 6 cut(s) 617, 659, 675, 789, 809, 822
HpySE526I ACGT 1 cut(s) 715
Hsp92I GRCGYC 1 cut(s) 490
Hsp92II CATG 2 cut(s) 51, 689
HspAI GCGC 7 cut(s) 276, 333, 500, 643, 663, 804, 806
Kpn2I TCCGGA 2 cut(s) 485, 553
KroI GCCGGC 1 cut(s) 502
KroNI GCCGGC 1 cut(s) 504
Kzo9I GATC 2 cut(s) 108, 556
LmnI GCTCC 5 cut(s) 168, 415, 541, 613, 640
Lsp1109I GCAGC 3 cut(s) 762, 790, 793
MaeI CTAG 2 cut(s) 785, 795
MaeII ACGT 1 cut(s) 715
MaeIII GTNAC 1 cut(s) 316
MalI GATC 2 cut(s) 110, 558
MbiI CCGCTC 2 cut(s) 418, 547
MboI GATC 2 cut(s) 108, 556
MboII GAAGA 7 cut(s) 31, 203, 237, 258, 279, 333, 602
MflI RGATCY 1 cut(s) 556
MhlI GDGCHC 4 cut(s) 375, 448, 538, 618
MluCI AATT 5 cut(s) 17, 35, 117, 229, 250
MmeI TCCRAC 1 cut(s) 618
MnlI CCTC 7 cut(s) 15, 68, 364, 568, 592, 643, 748
MroI TCCGGA 2 cut(s) 485, 553
MroNI GCCGGC 1 cut(s) 502
MroXI GAANNNNTTC 1 cut(s) 430
MseI TTAA 1 cut(s) 561
MspA1I CMGCKG 1 cut(s) 151
MvaI CCWGG 3 cut(s) 629, 647, 725
MvnI CGCG 1 cut(s) 806
MwoI GCNNNNNNNGC 6 cut(s) 584, 608, 671, 734, 781, 810
NaeI GCCGGC 1 cut(s) 504
NciI CCSGG 7 cut(s) 166, 474, 475, 509, 569, 607, 608
NdeI CATATG 1 cut(s) 80
NdeII GATC 2 cut(s) 108, 556
NgoMIV GCCGGC 1 cut(s) 502
NheI GCTAGC 1 cut(s) 784
NlaIII CATG 2 cut(s) 51, 689
NlaIV GGNNCC 4 cut(s) 134, 484, 507, 537
NspV TTCGAA 1 cut(s) 669
PagI TCATGA 1 cut(s) 685
PauI GCGCGC 1 cut(s) 804
PdiI GCCGGC 1 cut(s) 504
PdmI GAANNNNTTC 1 cut(s) 430
PfeI GAWTC 2 cut(s) 99, 741
PinAI ACCGGT 1 cut(s) 218
PkrI GCNGC 6 cut(s) 440, 543, 546, 777, 780, 783
Psp124BI GAGCTC 1 cut(s) 618
Psp6I CCWGG 3 cut(s) 627, 645, 723
PspFI CCCAGC 2 cut(s) 278, 496
PspGI CCWGG 3 cut(s) 627, 645, 723
PspN4I GGNNCC 4 cut(s) 134, 484, 507, 537
PspPI GGNCC 4 cut(s) 471, 483, 505, 736
PstI CTGCAG 1 cut(s) 780
PsuI RGATCY 1 cut(s) 556
PteI GCGCGC 1 cut(s) 804
RsaI GTAC 1 cut(s) 217
RsaNI GTAC 1 cut(s) 216
SacI GAGCTC 1 cut(s) 618
SaqAI TTAA 1 cut(s) 561
SatI GCNGC 6 cut(s) 439, 542, 545, 776, 779, 782
Sau3AI GATC 2 cut(s) 108, 556
Sau96I GGNCC 4 cut(s) 471, 483, 505, 736
SduI GDGCHC 4 cut(s) 375, 448, 538, 618
SetI ASST 8 cut(s) 211, 618, 676, 681, 718, 769, 786, 790
SfcI CTRYAG 1 cut(s) 776
SfuI TTCGAA 1 cut(s) 669
SinI GGWCC 1 cut(s) 483
SmaI CCCGGG 2 cut(s) 475, 608
Sse9I AATT 5 cut(s) 17, 35, 117, 229, 250
SspMI CTAG 2 cut(s) 785, 795
SstI GAGCTC 1 cut(s) 618
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 1 cut(s) 185
TaiI ACGT 1 cut(s) 718
TaqI TCGA 3 cut(s) 382, 669, 744
TasI AATT 5 cut(s) 17, 35, 117, 229, 250
TauI GCSGC 3 cut(s) 441, 544, 547
TfiI GAWTC 2 cut(s) 99, 741
Tru1I TTAA 1 cut(s) 561
Tru9I TTAA 1 cut(s) 561
TseI GCWGC 3 cut(s) 775, 778, 781
TspDTI ATGAA 1 cut(s) 702
TspGWI ACGGA 1 cut(s) 145
TspMI CCCGGG 2 cut(s) 473, 606
VneI GTGCAC 1 cut(s) 444
VpaK11BI GGWCC 1 cut(s) 483
XagI CCTNNNNNAGG 1 cut(s) 358
XapI RAATTY 2 cut(s) 17, 117
XmaI CCCGGG 2 cut(s) 473, 606
XmnI GAANNNNTTC 1 cut(s) 430
XspI CTAG 2 cut(s) 785, 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.