Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0015812

Physical Location & Seq

Genomic Coordinates Forward (+)

9664403 .. 9665484

Gene Structure 1082 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG109300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTTTGACATAGCTCTTCAGCGCTTCCAAACCGGGCATGGAAAAGGATTTCCAACTCATTTCTCCCAGATAGGGGCTCCTGACTTCTATACCATTCAAAGGCCGACAAGGTTGGAAAAAGCTTCATTTTTTTATCACTGCTCTGAACAAGACTGGTCTGATGGTTTTGAATTCATTGTATTAAATCTACTTCCTACTCGCATTATGCTCTTTATGATCTTCGCTCATGATTCAATTGCCATGTATTTGGCTATTGAACCTCAAAGTTTATGTTTTCATGTGATCAATCAATGCAGCCAACTTCAAGGATGCTATAAACATAGACATGCCAAAATACTGCAACCATCAAGTAAAGATGCGGCCTCAAGTAAGGCCTTGATTAGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko05012 map00190 map01100 map04714 map04723 map05012

Pfam Domains

Protein Families

Proton_antipo_M

Protein Analysis

129

Amino Acids

14.84

Weight (kDa)

8.41

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00285
fragaria_vesca	FvH4_c1g00520
rosa_chinensis	RchiOBHm_MTg0499211
rosa_laevigata	RLG00000000016 RLG00000000081 RLG00000000123 RLG00000000367 RLG00000017272
rosa_multiflora	Rmu_sc0000486.1_g000004
rosa_roxburghii	Rroxscaffold_2G00119530 Rroxscaffold_2G00119540 Rroxscaffold_6G00392870
rosa_samantha	Rh2BG107500 Rh2CG109300
rosa_wichuraiana	Rw3G029490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	359
AcsI	RAATTY	2 cut(s)	170, 384
AfeI	AGCGCT	1 cut(s)	23
AfiI	CCNNNNNNNGG	3 cut(s)	72, 73, 99
AgsI	TTSAA	5 cut(s)	98, 170, 234, 257, 305
AluBI	AGCT	2 cut(s)	14, 122
AluI	AGCT	2 cut(s)	14, 122
Aor51HI	AGCGCT	1 cut(s)	23
AoxI	GGCC	3 cut(s)	101, 360, 372
ApeKI	GCWGC	1 cut(s)	294
ApoI	RAATTY	2 cut(s)	170, 384
AspLEI	GCGC	1 cut(s)	24
AsuC2I	CCSGG	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	306
BccI	CCATC	2 cut(s)	155, 352
BclI	TGATCA	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	34
BfoI	RGCGCY	1 cut(s)	25
BisI	GCNGC	2 cut(s)	295, 360
BlsI	GCNGC	2 cut(s)	296, 361
Bme1390I	CCNGG	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	34
BmsI	GCATC	2 cut(s)	299, 346
BpuEI	CTTGAG	1 cut(s)	349
BpuMI	CCSGG	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 73, 99
Bse1I	ACTGG	1 cut(s)	158
BseGI	GGATG	1 cut(s)	314
BseLI	CCNNNNNNNGG	3 cut(s)	72, 73, 99
BseNI	ACTGG	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	306
BshFI	GGCC	3 cut(s)	103, 362, 374
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	3 cut(s)	72, 73, 99
BsnI	GGCC	3 cut(s)	103, 362, 374
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	2 cut(s)	216, 282
BspACI	CCGC	1 cut(s)	359
BspANI	GGCC	3 cut(s)	103, 362, 374
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	78
BspQI	GCTCTTC	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	158
BssMI	GATC	2 cut(s)	216, 282
Bst6I	CTCTTC	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	314
BstH2I	RGCGCY	1 cut(s)	25
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	2 cut(s)	219, 285
BstMBI	GATC	2 cut(s)	216, 282
BstNSI	RCATGY	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	306
BstXI	CCANNNNNNTGG	1 cut(s)	247
BsuRI	GGCC	3 cut(s)	103, 362, 374
BtsCI	GGATG	1 cut(s)	314
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	136
CciI	TCATGA	1 cut(s)	226
CfoI	GCGC	1 cut(s)	24
CviAII	CATG	5 cut(s)	38, 227, 241, 278, 326
CviJI	RGCY	8 cut(s)	14, 77, 103, 122, 251, 297, 362, 374
CviKI_1	RGCY	8 cut(s)	14, 77, 103, 122, 251, 297, 362, 374
DpnI	GATC	2 cut(s)	218, 284
DpnII	GATC	2 cut(s)	216, 282
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco147I	AGGCCT	1 cut(s)	374
Eco24I	GRGCYC	1 cut(s)	79
Eco47III	AGCGCT	1 cut(s)	23
EcoRI	GAATTC	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	79
FaeI	CATG	5 cut(s)	41, 230, 244, 281, 329
FatI	CATG	5 cut(s)	37, 226, 240, 277, 325
FbaI	TGATCA	1 cut(s)	282
Fnu4HI	GCNGC	2 cut(s)	295, 360
FokI	GGATG	1 cut(s)	321
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	2 cut(s)	295, 360
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	2 cut(s)	295, 360
HaeII	RGCGCY	1 cut(s)	25
HaeIII	GGCC	3 cut(s)	103, 362, 374
HapII	CCGG	1 cut(s)	33
HhaI	GCGC	1 cut(s)	24
Hin1II	CATG	5 cut(s)	41, 230, 244, 281, 329
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HindIII	AAGCTT	1 cut(s)	120
HinfI	GANTC	1 cut(s)	230
HpaII	CCGG	1 cut(s)	33
Hpy188I	TCNGA	2 cut(s)	145, 160
Hpy188III	TCNNGA	2 cut(s)	80, 227
HpyCH4V	TGCA	2 cut(s)	294, 340
Hsp92II	CATG	5 cut(s)	41, 230, 244, 281, 329
HspAI	GCGC	1 cut(s)	22
Ksp22I	TGATCA	1 cut(s)	282
Kzo9I	GATC	2 cut(s)	216, 282
LguI	GCTCTTC	1 cut(s)	21
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	4 cut(s)	46, 80, 93, 139
Lsp1109I	GCAGC	1 cut(s)	306
LweI	GCATC	2 cut(s)	299, 346
MalI	GATC	2 cut(s)	218, 284
MboI	GATC	2 cut(s)	216, 282
MboII	GAAGA	2 cut(s)	8, 211
MfeI	CAATTG	1 cut(s)	234
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	3 cut(s)	170, 234, 384
MmeI	TCCRAC	2 cut(s)	77, 93
MnlI	CCTC	2 cut(s)	270, 373
MseI	TTAA	1 cut(s)	182
MslI	CAYNNNNRTG	1 cut(s)	324
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	34
MunI	CAATTG	1 cut(s)	234
NciI	CCSGG	1 cut(s)	34
NdeII	GATC	2 cut(s)	216, 282
NlaIII	CATG	5 cut(s)	41, 230, 244, 281, 329
NlaIV	GGNNCC	1 cut(s)	78
NspI	RCATGY	1 cut(s)	329
PagI	TCATGA	1 cut(s)	226
PceI	AGGCCT	1 cut(s)	374
PciSI	GCTCTTC	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	230
PkrI	GCNGC	2 cut(s)	296, 361
PspN4I	GGNNCC	1 cut(s)	78
RseI	CAYNNNNRTG	1 cut(s)	324
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	2 cut(s)	295, 360
Sau3AI	GATC	2 cut(s)	216, 282
ScrFI	CCNGG	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	4 cut(s)	16, 113, 124, 262
SfaNI	GCATC	2 cut(s)	299, 346
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
Sse9I	AATT	3 cut(s)	170, 234, 384
SseBI	AGGCCT	1 cut(s)	374
SsiI	CCGC	1 cut(s)	359
StuI	AGGCCT	1 cut(s)	374
StyD4I	CCNGG	1 cut(s)	32
TasI	AATT	3 cut(s)	170, 234, 384
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TscAI	CASTG	1 cut(s)	143
TseI	GCWGC	1 cut(s)	294
TspDTI	ATGAA	3 cut(s)	114, 163, 266
TspRI	CASTG	1 cut(s)	143
XapI	RAATTY	2 cut(s)	170, 384
XceI	RCATGY	1 cut(s)	329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.