Rroxscaffold_2G00119540

NADH dehydrogenase (quinone) activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015812
Physical Location & Seq
Forward (+)
51353207 .. 51354033
827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00119540.1

Sequence Viewer

Length: 429 bp
ATGTTCAATCTTTTTTTAGCGGTTTCCCCAGAGATCTTTATCATTAATGCAACCTTCATTTTGCTCATTCATGGAGTTGTATTTAGTACCTCTAAGAAATATGATTATCCACCGTTAGTCAGTAATGTGGGTTGGCTTGGATTACTTAGTGTTGCGCGCCTAGGAGGGCAGCGCGCTTTGGGATGCGGAGTAGCTATTATCGCCCAGCTCCCTAACCTAATGCGGCACCGGGTTCGGACCGCAGGGAACCGTAGCATGGGGGGGCATCTAATCCTTTTGCCGCCGCAAGGCTGGCTAATCAATGGATGCGCGAAAGGTGCCATGCCATGGAGTGAGGAATATCCCGAGTCTCATGTAAGACAACTAAATGCACCTCGAGGTGCTGCCGAGGAACTGGGGGACCTTCTCGAGCACAGGATAGGCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Proton_antipo_M

Protein Analysis

142

Amino Acids

15.49

Weight (kDa)

9.18

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015812)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00285
fragaria_vesca FvH4_c1g00520
rosa_chinensis RchiOBHm_MTg0499211
rosa_laevigata RLG00000000016 RLG00000000081 RLG00000000123 RLG00000000367 RLG00000017272
rosa_multiflora Rmu_sc0000486.1_g000004
rosa_roxburghii Rroxscaffold_2G00119530 Rroxscaffold_2G00119540 Rroxscaffold_6G00392870
rosa_samantha Rh2BG107500 Rh2CG109300
rosa_wichuraiana Rw3G029490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 375
AccB1I GGYRCC 2 cut(s) 225, 317
AccB7I CCANNNNNTGG 1 cut(s) 327
AccII CGCG 3 cut(s) 157, 174, 311
AciI CCGC 6 cut(s) 20, 186, 223, 240, 281, 284
AfaI GTAC 1 cut(s) 88
AfiI CCNNNNNNNGG 3 cut(s) 256, 287, 327
AgsI TTSAA 1 cut(s) 7
AluBI AGCT 2 cut(s) 194, 208
AluI AGCT 2 cut(s) 194, 208
Alw21I GWGCWC 1 cut(s) 414
Alw26I GTCTC 1 cut(s) 354
Ama87I CYCGRG 3 cut(s) 344, 375, 407
ApeKI GCWGC 2 cut(s) 169, 383
AseI ATTAAT 1 cut(s) 45
AspA2I CCTAGG 1 cut(s) 160
AspLEI GCGC 5 cut(s) 157, 159, 174, 176, 311
AspS9I GGNCC 2 cut(s) 237, 400
AsuC2I CCSGG 1 cut(s) 230
AvaI CYCGRG 3 cut(s) 344, 375, 407
AvaII GGWCC 2 cut(s) 237, 400
AvrII CCTAGG 1 cut(s) 160
BanI GGYRCC 2 cut(s) 225, 317
Bbv12I GWGCWC 1 cut(s) 414
BbvI GCAGC 2 cut(s) 181, 370
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BcnI CCSGG 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 354
BfaI CTAG 1 cut(s) 161
BglII AGATCT 1 cut(s) 33
BisI GCNGC 5 cut(s) 170, 224, 281, 284, 384
BlnI CCTAGG 1 cut(s) 160
BlsI GCNGC 5 cut(s) 171, 225, 282, 285, 385
Bme1390I CCNGG 1 cut(s) 230
Bme18I GGWCC 2 cut(s) 237, 400
BmeT110I CYCGRG 3 cut(s) 344, 375, 407
BmgT120I GGNCC 2 cut(s) 237, 400
BmiI GGNNCC 4 cut(s) 227, 248, 319, 401
BmrFI CCNGG 1 cut(s) 230
BmrI ACTGGG 1 cut(s) 404
BmsI GCATC 3 cut(s) 173, 274, 296
BmuI ACTGGG 1 cut(s) 404
BpuMI CCSGG 1 cut(s) 230
BsaBI GATNNNNATC 1 cut(s) 38
BsaJI CCNNGG 3 cut(s) 160, 326, 387
Bsc4I CCNNNNNNNGG 3 cut(s) 256, 287, 327
Bse1I ACTGG 1 cut(s) 399
Bse8I GATNNNNATC 1 cut(s) 38
BseDI CCNNGG 3 cut(s) 160, 326, 387
BseGI GGATG 2 cut(s) 188, 311
BseJI GATNNNNATC 1 cut(s) 38
BseLI CCNNNNNNNGG 3 cut(s) 256, 287, 327
BseNI ACTGG 1 cut(s) 399
BsePI GCGCGC 2 cut(s) 155, 172
BseXI GCAGC 2 cut(s) 181, 370
BseYI CCCAGC 1 cut(s) 204
Bsh1236I CGCG 3 cut(s) 157, 174, 311
BshNI GGYRCC 2 cut(s) 225, 317
BsiHKAI GWGCWC 1 cut(s) 414
BsiHKCI CYCGRG 3 cut(s) 344, 375, 407
BsiSI CCGG 1 cut(s) 229
BslFI GGGAC 1 cut(s) 413
BslI CCNNNNNNNGG 3 cut(s) 256, 287, 327
BsmAI GTCTC 1 cut(s) 354
BsmFI GGGAC 1 cut(s) 413
BsoBI CYCGRG 3 cut(s) 344, 375, 407
Bsp1286I GDGCHC 1 cut(s) 414
Bsp143I GATC 1 cut(s) 33
Bsp19I CCATGG 1 cut(s) 326
BspACI CCGC 6 cut(s) 20, 186, 223, 240, 281, 284
BspFNI CGCG 3 cut(s) 157, 174, 311
BspLI GGNNCC 4 cut(s) 227, 248, 319, 401
BspT107I GGYRCC 2 cut(s) 225, 317
BsrI ACTGG 1 cut(s) 399
BssECI CCNNGG 3 cut(s) 160, 326, 387
BssHII GCGCGC 2 cut(s) 155, 172
BssMI GATC 1 cut(s) 33
BssT1I CCWWGG 2 cut(s) 160, 326
Bst4CI ACNGT 2 cut(s) 114, 251
BstC8I GCNNGC 3 cut(s) 157, 174, 293
BstDEI CTNAG 2 cut(s) 93, 146
BstDSI CCRYGG 1 cut(s) 326
BstF5I GGATG 2 cut(s) 188, 311
BstFNI CGCG 3 cut(s) 157, 174, 311
BstHHI GCGC 5 cut(s) 157, 159, 174, 176, 311
BstKTI GATC 1 cut(s) 36
BstMAI GTCTC 1 cut(s) 354
BstMBI GATC 1 cut(s) 33
BstMWI GCNNNNNNNGC 3 cut(s) 200, 292, 317
BstSCI CCNGG 1 cut(s) 228
BstUI CGCG 3 cut(s) 157, 174, 311
BstV1I GCAGC 2 cut(s) 181, 370
BstX2I RGATCY 1 cut(s) 33
BstYI RGATCY 1 cut(s) 33
BtgI CCRYGG 1 cut(s) 326
BtsCI GGATG 2 cut(s) 188, 311
Cac8I GCNNGC 3 cut(s) 157, 174, 293
CfoI GCGC 5 cut(s) 157, 159, 174, 176, 311
Cfr13I GGNCC 2 cut(s) 237, 400
CpoI CGGWCCG 1 cut(s) 237
Csp6I GTAC 1 cut(s) 87
CspI CGGWCCG 1 cut(s) 237
CviAII CATG 5 cut(s) 71, 256, 322, 327, 353
CviJI RGCY 5 cut(s) 136, 194, 208, 291, 295
CviKI_1 RGCY 5 cut(s) 136, 194, 208, 291, 295
CviQI GTAC 1 cut(s) 87
DdeI CTNAG 2 cut(s) 93, 146
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
Eco130I CCWWGG 2 cut(s) 160, 326
Eco47I GGWCC 2 cut(s) 237, 400
Eco88I CYCGRG 3 cut(s) 344, 375, 407
EcoO109I RGGNCCY 1 cut(s) 400
EcoT14I CCWWGG 2 cut(s) 160, 326
ErhI CCWWGG 2 cut(s) 160, 326
FaeI CATG 5 cut(s) 74, 259, 325, 330, 356
FaiI YATR 6 cut(s) 72, 102, 257, 323, 328, 354
FaqI GGGAC 1 cut(s) 413
FatI CATG 5 cut(s) 70, 255, 321, 326, 352
Fnu4HI GCNGC 5 cut(s) 170, 224, 281, 284, 384
FokI GGATG 2 cut(s) 195, 318
Fsp4HI GCNGC 5 cut(s) 170, 224, 281, 284, 384
FspBI CTAG 1 cut(s) 161
GlaI GCGC 5 cut(s) 156, 158, 173, 175, 310
GluI GCNGC 5 cut(s) 170, 224, 281, 284, 384
GsaI CCCAGC 1 cut(s) 208
HapII CCGG 1 cut(s) 229
HhaI GCGC 5 cut(s) 157, 159, 174, 176, 311
Hin1II CATG 5 cut(s) 74, 259, 325, 330, 356
Hin6I GCGC 5 cut(s) 155, 157, 172, 174, 309
HinP1I GCGC 5 cut(s) 155, 157, 172, 174, 309
HinfI GANTC 1 cut(s) 347
HpaII CCGG 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 2 cut(s) 344, 407
HpyAV CCTTC 2 cut(s) 64, 413
HpyCH4III ACNGT 2 cut(s) 114, 251
HpyCH4V TGCA 2 cut(s) 50, 371
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 292, 317
HpyF3I CTNAG 2 cut(s) 93, 146
Hsp92II CATG 5 cut(s) 74, 259, 325, 330, 356
HspAI GCGC 5 cut(s) 155, 157, 172, 174, 309
Kzo9I GATC 1 cut(s) 33
LmnI GCTCC 1 cut(s) 213
LpnPI CCDG 7 cut(s) 42, 218, 228, 242, 277, 380, 400
Lsp1109I GCAGC 2 cut(s) 181, 370
LweI GCATC 3 cut(s) 173, 274, 296
MaeI CTAG 1 cut(s) 161
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MfeI CAATTG 1 cut(s) 424
MflI RGATCY 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 414
MluCI AATT 1 cut(s) 424
MlyI GAGTC 1 cut(s) 356
MnlI CCTC 6 cut(s) 100, 158, 328, 371, 382, 384
MseI TTAA 1 cut(s) 45
MspI CCGG 1 cut(s) 229
MspR9I CCNGG 1 cut(s) 230
MunI CAATTG 1 cut(s) 424
MvnI CGCG 3 cut(s) 157, 174, 311
MwoI GCNNNNNNNGC 3 cut(s) 200, 292, 317
NciI CCSGG 1 cut(s) 230
NcoI CCATGG 1 cut(s) 326
NdeII GATC 1 cut(s) 33
NlaIII CATG 5 cut(s) 74, 259, 325, 330, 356
NlaIV GGNNCC 4 cut(s) 227, 248, 319, 401
NmeAIII GCCGAG 1 cut(s) 412
PaeR7I CTCGAG 2 cut(s) 375, 407
PauI GCGCGC 2 cut(s) 155, 172
PflMI CCANNNNNTGG 1 cut(s) 327
PkrI GCNGC 5 cut(s) 171, 225, 282, 285, 385
PleI GAGTC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 355
PpuMI RGGWCCY 1 cut(s) 400
PshBI ATTAAT 1 cut(s) 45
Psp5II RGGWCCY 1 cut(s) 400
PspFI CCCAGC 1 cut(s) 204
PspN4I GGNNCC 4 cut(s) 227, 248, 319, 401
PspPI GGNCC 2 cut(s) 237, 400
PspPPI RGGWCCY 1 cut(s) 400
PspXI VCTCGAGB 1 cut(s) 375
PsuI RGATCY 1 cut(s) 33
PteI GCGCGC 2 cut(s) 155, 172
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
Rsr2I CGGWCCG 1 cut(s) 237
RsrII CGGWCCG 1 cut(s) 237
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 5 cut(s) 170, 224, 281, 284, 384
Sau3AI GATC 1 cut(s) 33
Sau96I GGNCC 2 cut(s) 237, 400
SchI GAGTC 1 cut(s) 356
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 1 cut(s) 414
SetI ASST 9 cut(s) 56, 92, 196, 210, 219, 319, 376, 382, 405
SfaNI GCATC 3 cut(s) 173, 274, 296
Sfr274I CTCGAG 2 cut(s) 375, 407
SinI GGWCC 2 cut(s) 237, 400
SlaI CTCGAG 2 cut(s) 375, 407
SmlI CTYRAG 2 cut(s) 375, 407
SmoI CTYRAG 2 cut(s) 375, 407
Sse9I AATT 1 cut(s) 424
SsiI CCGC 6 cut(s) 20, 186, 223, 240, 281, 284
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 228
StyI CCWWGG 2 cut(s) 160, 326
TaaI ACNGT 2 cut(s) 114, 251
TaqI TCGA 2 cut(s) 376, 408
TasI AATT 1 cut(s) 424
TauI GCSGC 3 cut(s) 226, 283, 286
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TseI GCWGC 2 cut(s) 169, 383
TspDTI ATGAA 2 cut(s) 46, 59
Van91I CCANNNNNTGG 1 cut(s) 327
VpaK11BI GGWCC 2 cut(s) 237, 400
VspI ATTAAT 1 cut(s) 45
XhoI CTCGAG 2 cut(s) 375, 407
XmaJI CCTAGG 1 cut(s) 160
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.