Rmu_sc0000486.1_g000004

NADH dehydrogenase (quinone) activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000486.1
OG0015812
Physical Location & Seq
Forward (+)
11669 .. 13556
1888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000486.1_g000004.1.cds

Sequence Viewer

Length: 978 bp
atgttcaatctttttttagcggtttccccagagatctttatcattaatgcaaccttcattttgctcattcatggagttgtatttagtacctctaagaaatatgattatccaccgtatccaccgttagttagtaatgtgggttggcttggattacttagtgttgcgtgcctaggagggcagtgcgctttgggatgcggagtagctattattatcgcccagctccctaacctaacgcggcaccgagttcggaccacagggaaccatagcatggggggggggcatctaatccttttgccgctgcaaggctggctaatcgtacacaacaggcttgaagaccccaggttctggaaggcacatgagtccgaatgctatgttgaatgtgcgaccgacactacactacgtaggtacctgtgcaggtggggcgtcgtgcttacctccggcacctggctttctccgggcttagctgcacttaataggctggattggcttcctctctggcggcttccttaccttacccacactacactcccattccaagctacgcctgttgagaaagatgcattgcgatttcctcttctgtggacgtaccggaatatgatccgggacggaaagagaaagacttttttctccggcgggctttctctcgtaaagccaaagacgccccaagacaagccgccattacaagaacttcaaacaaacttccagccattgtttaagcttctgttcaagacagttgaggaagcaatgcagagttgtactgagtttgaatgcctcatcggaaatttcaagtccacgcttgaccctctccaaccatggatcaaaggagaacgcaagggacttgaggacctcgtggagaaagaacgtctggttaaaaaaaatccacaggggcttaaaggtagtaggcaagttctccaacgttcagatatggaagttttactcagctcctatagtcctatccactatccagaggctatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Proton_antipo_M

Protein Analysis

325

Amino Acids

36.9

Weight (kDa)

9.15

Isoelectric Point (pI)

54.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015812)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00285
fragaria_vesca FvH4_c1g00520
rosa_chinensis RchiOBHm_MTg0499211
rosa_laevigata RLG00000000016 RLG00000000081 RLG00000000123 RLG00000000367 RLG00000017272
rosa_multiflora Rmu_sc0000486.1_g000004
rosa_roxburghii Rroxscaffold_2G00119530 Rroxscaffold_2G00119540 Rroxscaffold_6G00392870
rosa_samantha Rh2BG107500 Rh2CG109300
rosa_wichuraiana Rw3G029490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 405
Acc36I ACCTGC 1 cut(s) 405
Acc65I GGTACC 1 cut(s) 405
AccB1I GGYRCC 3 cut(s) 237, 405, 440
AccB7I CCANNNNNTGG 2 cut(s) 268, 345
AccII CGCG 1 cut(s) 235
AciI CCGC 7 cut(s) 20, 195, 235, 296, 499, 633, 674
AclI AACGTT 1 cut(s) 916
AclWI GGATC 2 cut(s) 592, 824
AcsI RAATTY 1 cut(s) 781
AcyI GRCGYC 2 cut(s) 423, 659
AfaI GTAC 5 cut(s) 88, 318, 407, 587, 757
AfiI CCNNNNNNNGG 4 cut(s) 268, 302, 345, 444
AgsI TTSAA 7 cut(s) 7, 332, 377, 692, 727, 767, 787
AjnI CCWGG 2 cut(s) 338, 443
AluBI AGCT 6 cut(s) 203, 220, 464, 539, 718, 942
AluI AGCT 6 cut(s) 203, 220, 464, 539, 718, 942
AlwI GGATC 2 cut(s) 592, 824
AlwNI CAGNNNCTG 1 cut(s) 345
ApeKI GCWGC 2 cut(s) 298, 464
ApoI RAATTY 1 cut(s) 781
AseI ATTAAT 1 cut(s) 45
Asp718I GGTACC 1 cut(s) 405
AspA2I CCTAGG 1 cut(s) 169
AspLEI GCGC 1 cut(s) 185
AspS9I GGNCC 2 cut(s) 249, 844
AsuC2I CCSGG 2 cut(s) 456, 602
AvaII GGWCC 2 cut(s) 249, 844
AvrII CCTAGG 1 cut(s) 169
BaeI ACNNNNGTAYC 2 cut(s) 389, 422
BanI GGYRCC 3 cut(s) 237, 405, 440
BauI CACGAG 1 cut(s) 848
BbsI GAAGAC 1 cut(s) 339
BbvI GCAGC 2 cut(s) 285, 451
BcgI CGANNNNNNTGC 2 cut(s) 227, 261
BciT130I CCWGG 2 cut(s) 340, 445
BciVI GTATCC 1 cut(s) 126
BcnI CCSGG 2 cut(s) 456, 602
BfaI CTAG 2 cut(s) 170, 976
BfmI CTRYAG 1 cut(s) 946
BfuAI ACCTGC 1 cut(s) 405
BfuI GTATCC 1 cut(s) 126
BglII AGATCT 1 cut(s) 33
BisI GCNGC 6 cut(s) 236, 296, 299, 465, 500, 674
BlnI CCTAGG 1 cut(s) 169
BlpI GCTNAGC 1 cut(s) 460
BlsI GCNGC 6 cut(s) 237, 297, 300, 466, 501, 675
Bme1390I CCNGG 4 cut(s) 340, 445, 456, 602
Bme18I GGWCC 2 cut(s) 249, 844
BmgT120I GGNCC 2 cut(s) 249, 844
BmiI GGNNCC 4 cut(s) 239, 260, 407, 442
BmrFI CCNGG 4 cut(s) 340, 445, 456, 602
BmsI GCATC 3 cut(s) 182, 289, 547
BpiI GAAGAC 1 cut(s) 339
Bpu1102I GCTNAGC 1 cut(s) 460
BpuEI CTTGAG 1 cut(s) 860
BpuMI CCSGG 2 cut(s) 456, 602
BsaAI YACGTR 1 cut(s) 401
BsaBI GATNNNNATC 1 cut(s) 38
BsaHI GRCGYC 2 cut(s) 423, 659
BsaJI CCNNGG 3 cut(s) 169, 338, 812
BsaWI WCCGGW 1 cut(s) 588
Bsc4I CCNNNNNNNGG 4 cut(s) 268, 302, 345, 444
Bse3DI GCAATG 2 cut(s) 560, 750
Bse8I GATNNNNATC 1 cut(s) 38
BseBI CCWGG 2 cut(s) 340, 445
BseDI CCNNGG 3 cut(s) 169, 338, 812
BseGI GGATG 1 cut(s) 197
BseJI GATNNNNATC 1 cut(s) 38
BseLI CCNNNNNNNGG 4 cut(s) 268, 302, 345, 444
BseMI GCAATG 2 cut(s) 560, 750
BseMII CTCAG 2 cut(s) 750, 952
BseXI GCAGC 2 cut(s) 285, 451
BseYI CCCAGC 1 cut(s) 216
BsgI GTGCAG 2 cut(s) 433, 450
Bsh1236I CGCG 1 cut(s) 235
Bsh1285I CGRYCG 1 cut(s) 387
BshNI GGYRCC 3 cut(s) 237, 405, 440
BsiEI CGRYCG 1 cut(s) 387
BsiSI CCGG 5 cut(s) 438, 455, 589, 601, 630
BslFI GGGAC 2 cut(s) 617, 849
BslI CCNNNNNNNGG 4 cut(s) 268, 302, 345, 444
BsmFI GGGAC 2 cut(s) 617, 849
BsmI GAATGC 2 cut(s) 371, 773
Bsp143I GATC 3 cut(s) 33, 597, 816
Bsp1720I GCTNAGC 1 cut(s) 460
Bsp19I CCATGG 1 cut(s) 812
BspACI CCGC 7 cut(s) 20, 195, 235, 296, 499, 633, 674
BspCNI CTCAG 2 cut(s) 751, 951
BspFNI CGCG 1 cut(s) 235
BspLI GGNNCC 4 cut(s) 239, 260, 407, 442
BspMI ACCTGC 1 cut(s) 405
BspPI GGATC 2 cut(s) 592, 824
BspT107I GGYRCC 3 cut(s) 237, 405, 440
BsrDI GCAATG 2 cut(s) 560, 750
BssECI CCNNGG 3 cut(s) 169, 338, 812
BssMI GATC 3 cut(s) 33, 597, 816
BssNI GRCGYC 2 cut(s) 423, 659
BssSI CACGAG 1 cut(s) 848
BssT1I CCWWGG 2 cut(s) 169, 812
Bst2BI CACGAG 1 cut(s) 848
Bst2UI CCWGG 2 cut(s) 340, 445
Bst4CI ACNGT 3 cut(s) 114, 123, 733
Bst6I CTCTTC 1 cut(s) 579
BstACI GRCGYC 2 cut(s) 423, 659
BstBAI YACGTR 1 cut(s) 401
BstC8I GCNNGC 3 cut(s) 166, 308, 635
BstDEI CTNAG 5 cut(s) 93, 155, 460, 759, 938
BstDSI CCRYGG 1 cut(s) 812
BstF5I GGATG 1 cut(s) 197
BstFNI CGCG 1 cut(s) 235
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 3 cut(s) 36, 600, 819
BstMBI GATC 3 cut(s) 33, 597, 816
BstMCI CGRYCG 1 cut(s) 387
BstMWI GCNNNNNNNGC 4 cut(s) 307, 420, 484, 658
BstNI CCWGG 2 cut(s) 340, 445
BstSCI CCNGG 4 cut(s) 338, 443, 454, 600
BstSFI CTRYAG 1 cut(s) 946
BstSNI TACGTA 1 cut(s) 401
BstUI CGCG 1 cut(s) 235
BstV1I GCAGC 2 cut(s) 285, 451
BstV2I GAAGAC 1 cut(s) 339
BstX2I RGATCY 1 cut(s) 33
BstYI RGATCY 1 cut(s) 33
BsuI GTATCC 1 cut(s) 126
BtgI CCRYGG 1 cut(s) 812
BtsCI GGATG 1 cut(s) 197
BtsI GCAGTG 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 185
BveI ACCTGC 1 cut(s) 405
Cac8I GCNNGC 3 cut(s) 166, 308, 635
CaiI CAGNNNCTG 1 cut(s) 345
CfoI GCGC 1 cut(s) 185
Cfr13I GGNCC 2 cut(s) 249, 844
CseI GACGC 2 cut(s) 412, 667
Csp6I GTAC 5 cut(s) 87, 317, 406, 586, 756
CviAII CATG 4 cut(s) 71, 268, 356, 813
CviQI GTAC 5 cut(s) 87, 317, 406, 586, 756
DdeI CTNAG 5 cut(s) 93, 155, 460, 759, 938
DpnI GATC 3 cut(s) 35, 599, 818
DpnII GATC 3 cut(s) 33, 597, 816
Eam1104I CTCTTC 1 cut(s) 579
EarI CTCTTC 1 cut(s) 579
Eco105I TACGTA 1 cut(s) 401
Eco130I CCWWGG 2 cut(s) 169, 812
Eco47I GGWCC 2 cut(s) 249, 844
EcoO109I RGGNCCY 1 cut(s) 844
EcoRII CCWGG 2 cut(s) 338, 443
EcoT14I CCWWGG 2 cut(s) 169, 812
EcoT22I ATGCAT 1 cut(s) 562
ErhI CCWWGG 2 cut(s) 169, 812
FaeI CATG 4 cut(s) 74, 271, 359, 816
FaqI GGGAC 2 cut(s) 617, 849
FatI CATG 4 cut(s) 70, 267, 355, 812
FauI CCCGC 1 cut(s) 626
Fnu4HI GCNGC 6 cut(s) 236, 296, 299, 465, 500, 674
FokI GGATG 1 cut(s) 204
Fsp4HI GCNGC 6 cut(s) 236, 296, 299, 465, 500, 674
FspBI CTAG 2 cut(s) 170, 976
GlaI GCGC 1 cut(s) 184
GluI GCNGC 6 cut(s) 236, 296, 299, 465, 500, 674
GsaI CCCAGC 1 cut(s) 220
HapII CCGG 5 cut(s) 438, 455, 589, 601, 630
HgaI GACGC 2 cut(s) 412, 667
HhaI GCGC 1 cut(s) 185
Hin1I GRCGYC 2 cut(s) 423, 659
Hin1II CATG 4 cut(s) 74, 271, 359, 816
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HindIII AAGCTT 1 cut(s) 716
HinfI GANTC 1 cut(s) 359
HpaII CCGG 5 cut(s) 438, 455, 589, 601, 630
Hpy166II GTNNAC 3 cut(s) 319, 582, 792
Hpy188I TCNGA 4 cut(s) 249, 364, 779, 922
Hpy188III TCNNGA 3 cut(s) 346, 727, 965
Hpy8I GTNNAC 3 cut(s) 319, 582, 792
Hpy99I CGWCG 1 cut(s) 428
HpyAV CCTTC 2 cut(s) 64, 343
HpyCH4III ACNGT 3 cut(s) 114, 123, 733
HpyCH4IV ACGT 4 cut(s) 400, 584, 862, 916
HpyCH4V TGCA 6 cut(s) 50, 301, 414, 467, 560, 748
HpyF10VI GCNNNNNNNGC 4 cut(s) 307, 420, 484, 658
HpyF3I CTNAG 5 cut(s) 93, 155, 460, 759, 938
HpySE526I ACGT 4 cut(s) 400, 584, 862, 916
Hsp92I GRCGYC 2 cut(s) 423, 659
Hsp92II CATG 4 cut(s) 74, 271, 359, 816
HspAI GCGC 1 cut(s) 183
KpnI GGTACC 1 cut(s) 409
Kzo9I GATC 3 cut(s) 33, 597, 816
LmnI GCTCC 2 cut(s) 225, 947
Lsp1109I GCAGC 2 cut(s) 285, 451
LweI GCATC 3 cut(s) 182, 289, 547
MaeI CTAG 2 cut(s) 170, 976
MaeII ACGT 4 cut(s) 400, 584, 862, 916
MalI GATC 3 cut(s) 35, 599, 818
MboI GATC 3 cut(s) 33, 597, 816
MboII GAAGA 2 cut(s) 344, 566
MflI RGATCY 1 cut(s) 33
MluCI AATT 1 cut(s) 781
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 2 cut(s) 832, 937
Mph1103I ATGCAT 1 cut(s) 562
MseI TTAA 5 cut(s) 45, 471, 714, 870, 891
MspA1I CMGCKG 1 cut(s) 298
MspI CCGG 5 cut(s) 438, 455, 589, 601, 630
MspR9I CCNGG 4 cut(s) 340, 445, 456, 602
Mva1269I GAATGC 2 cut(s) 371, 773
MvaI CCWGG 2 cut(s) 340, 445
MvnI CGCG 1 cut(s) 235
MwoI GCNNNNNNNGC 4 cut(s) 307, 420, 484, 658
NciI CCSGG 2 cut(s) 456, 602
NcoI CCATGG 1 cut(s) 812
NdeII GATC 3 cut(s) 33, 597, 816
NlaIII CATG 4 cut(s) 74, 271, 359, 816
NlaIV GGNNCC 4 cut(s) 239, 260, 407, 442
NsiI ATGCAT 1 cut(s) 562
PaqCI CACCTGC 1 cut(s) 405
PctI GAATGC 2 cut(s) 371, 773
PflMI CCANNNNNTGG 2 cut(s) 268, 345
PfoI TCCNGGA 1 cut(s) 600
PkrI GCNGC 6 cut(s) 237, 297, 300, 466, 501, 675
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
Ppu21I YACGTR 1 cut(s) 401
PpuMI RGGWCCY 1 cut(s) 844
PshBI ATTAAT 1 cut(s) 45
Psp1406I AACGTT 1 cut(s) 916
Psp5II RGGWCCY 1 cut(s) 844
Psp6I CCWGG 2 cut(s) 338, 443
PspFI CCCAGC 1 cut(s) 216
PspGI CCWGG 2 cut(s) 338, 443
PspN4I GGNNCC 4 cut(s) 239, 260, 407, 442
PspPI GGNCC 2 cut(s) 249, 844
PspPPI RGGWCCY 1 cut(s) 844
PstNI CAGNNNCTG 1 cut(s) 345
PsuI RGATCY 1 cut(s) 33
RsaI GTAC 5 cut(s) 88, 318, 407, 587, 757
RsaNI GTAC 5 cut(s) 87, 317, 406, 586, 756
SaqAI TTAA 5 cut(s) 45, 471, 714, 870, 891
SatI GCNGC 6 cut(s) 236, 296, 299, 465, 500, 674
Sau3AI GATC 3 cut(s) 33, 597, 816
Sau96I GGNCC 2 cut(s) 249, 844
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 4 cut(s) 340, 445, 456, 602
SfaNI GCATC 3 cut(s) 182, 289, 547
SfcI CTRYAG 1 cut(s) 946
SinI GGWCC 2 cut(s) 249, 844
SmlI CTYRAG 1 cut(s) 839
SmoI CTYRAG 1 cut(s) 839
SnaBI TACGTA 1 cut(s) 401
Sse9I AATT 1 cut(s) 781
SsiI CCGC 7 cut(s) 20, 195, 235, 296, 499, 633, 674
SspMI CTAG 2 cut(s) 170, 976
StyD4I CCNGG 4 cut(s) 338, 443, 454, 600
StyI CCWWGG 2 cut(s) 169, 812
TaaI ACNGT 3 cut(s) 114, 123, 733
TaiI ACGT 4 cut(s) 403, 587, 865, 919
TaqII GACCGA 1 cut(s) 401
TasI AATT 1 cut(s) 781
TatI WGTACW 1 cut(s) 755
TauI GCSGC 4 cut(s) 238, 298, 502, 676
Tru1I TTAA 5 cut(s) 45, 471, 714, 870, 891
Tru9I TTAA 5 cut(s) 45, 471, 714, 870, 891
TscAI CASTG 1 cut(s) 185
TseI GCWGC 2 cut(s) 298, 464
TspDTI ATGAA 2 cut(s) 46, 59
TspGWI ACGGA 1 cut(s) 621
TspRI CASTG 1 cut(s) 185
Van91I CCANNNNNTGG 2 cut(s) 268, 345
VpaK11BI GGWCC 2 cut(s) 249, 844
VspI ATTAAT 1 cut(s) 45
XapI RAATTY 1 cut(s) 781
XmaJI CCTAGG 1 cut(s) 169
XspI CTAG 2 cut(s) 170, 976
Zsp2I ATGCAT 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.