Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0015812

Physical Location & Seq

Genomic Coordinates Reverse (-)

45391993 .. 45395342

Gene Structure 3350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G029490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTATAAGCAAGTACTCCATACTGCTATTCAATTGTTTCTCAAGGATTTGGAGCTTTCAGTACCTGTAAAGTATTTGATTGGGGACTTGAAAGGAAAAGCGCAAGACCAGGCTCTTCAGCGCTTCCAAACCGAGCATGGAAAAGGTTTTCCAACTCATTTCTCCCAGATAGGGGCTCCTGACTTCTATACCATTCAAAGGCCGACAAGGTCTGATGGTTTTGAATTCATTGTATTAAATCCACTTCCTACTCGCATTATGCTCTTTATGATCTTCGCTCATGATTCAATTGCCACGTATTTGGCTATTGAACCTCAAACAAGCTTCAAGGACGCTATAAACACAGACATGCCAAAATACTGCAACCATCAAGTAAAGATGCGGCCTCAAGAAAATGGCCATAAGCCCACAAGCGATTTGGATGCGATTTCGGCCCTGAACTGCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko05012 map00190 map01100 map04714 map04723 map05012

Pfam Domains

Protein Families

Proton_antipo_M

Protein Analysis

149

Amino Acids

16.96

Weight (kDa)

7.01

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00285
fragaria_vesca	FvH4_c1g00520
rosa_chinensis	RchiOBHm_MTg0499211
rosa_laevigata	RLG00000000016 RLG00000000081 RLG00000000123 RLG00000000367 RLG00000017272
rosa_multiflora	Rmu_sc0000486.1_g000004
rosa_roxburghii	Rroxscaffold_2G00119530 Rroxscaffold_2G00119540 Rroxscaffold_6G00392870
rosa_samantha	Rh2BG107500 Rh2CG109300
rosa_wichuraiana	Rw3G029490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	382
AcoI	YGGCCR	1 cut(s)	397
AcsI	RAATTY	1 cut(s)	224
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	2 cut(s)	15, 63
AfeI	AGCGCT	1 cut(s)	122
AfiI	CCNNNNNNNGG	3 cut(s)	171, 172, 198
AgsI	TTSAA	7 cut(s)	32, 91, 197, 224, 288, 311, 328
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	2 cut(s)	55, 324
AluI	AGCT	2 cut(s)	55, 324
AlwNI	CAGNNNCTG	1 cut(s)	65
Aor51HI	AGCGCT	1 cut(s)	122
AoxI	GGCC	4 cut(s)	200, 383, 397, 432
ApoI	RAATTY	1 cut(s)	224
AspLEI	GCGC	2 cut(s)	103, 123
AspS9I	GGNCC	1 cut(s)	433
BalI	TGGCCA	1 cut(s)	399
BanII	GRGCYC	1 cut(s)	178
BccI	CCATC	2 cut(s)	209, 375
BcgI	CGANNNNNNTGC	2 cut(s)	404, 438
BciT130I	CCWGG	1 cut(s)	110
BfoI	RGCGCY	1 cut(s)	124
BisI	GCNGC	1 cut(s)	383
BlsI	GCNGC	1 cut(s)	384
BmcAI	AGTACT	1 cut(s)	15
Bme1390I	CCNGG	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	433
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	2 cut(s)	369, 412
BpuEI	CTTGAG	2 cut(s)	26, 372
BsaAI	YACGTR	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	3 cut(s)	171, 172, 198
BseBI	CCWGG	1 cut(s)	110
BseGI	GGATG	1 cut(s)	427
BseLI	CCNNNNNNNGG	3 cut(s)	171, 172, 198
BsgI	GTGCAG	1 cut(s)	427
BshFI	GGCC	4 cut(s)	202, 385, 399, 434
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	3 cut(s)	171, 172, 198
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	4 cut(s)	202, 385, 399, 434
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	1 cut(s)	270
BspACI	CCGC	1 cut(s)	382
BspANI	GGCC	4 cut(s)	202, 385, 399, 434
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	177
BspQI	GCTCTTC	1 cut(s)	120
BssMI	GATC	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	110
Bst6I	CTCTTC	1 cut(s)	120
BstBAI	YACGTR	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	427
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	2 cut(s)	103, 123
BstKTI	GATC	1 cut(s)	273
BstMBI	GATC	1 cut(s)	270
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	108
BstXI	CCANNNNNNTGG	1 cut(s)	301
BsuRI	GGCC	4 cut(s)	202, 385, 399, 434
BtsCI	GGATG	1 cut(s)	427
CaiI	CAGNNNCTG	1 cut(s)	65
CciI	TCATGA	1 cut(s)	280
CfoI	GCGC	2 cut(s)	103, 123
Cfr13I	GGNCC	1 cut(s)	433
CseI	GACGC	1 cut(s)	341
Csp6I	GTAC	2 cut(s)	14, 62
CviAII	CATG	3 cut(s)	137, 281, 349
CviQI	GTAC	2 cut(s)	14, 62
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
EaeI	YGGCCR	1 cut(s)	397
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	178
Eco47III	AGCGCT	1 cut(s)	122
Eco57I	CTGAAG	1 cut(s)	101
EcoRI	GAATTC	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	178
FaeI	CATG	3 cut(s)	140, 284, 352
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	3 cut(s)	136, 280, 348
Fnu4HI	GCNGC	1 cut(s)	383
FokI	GGATG	1 cut(s)	434
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	1 cut(s)	383
GlaI	GCGC	2 cut(s)	102, 122
GluI	GCNGC	1 cut(s)	383
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	4 cut(s)	202, 385, 399, 434
HgaI	GACGC	1 cut(s)	341
HhaI	GCGC	2 cut(s)	103, 123
Hin1II	CATG	3 cut(s)	140, 284, 352
Hin6I	GCGC	2 cut(s)	101, 121
HinP1I	GCGC	2 cut(s)	101, 121
HindIII	AAGCTT	1 cut(s)	322
HinfI	GANTC	1 cut(s)	284
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	3 cut(s)	179, 281, 389
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	2 cut(s)	363, 444
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpySE526I	ACGT	1 cut(s)	296
Hsp92II	CATG	3 cut(s)	140, 284, 352
HspAI	GCGC	2 cut(s)	101, 121
Kzo9I	GATC	1 cut(s)	270
LguI	GCTCTTC	1 cut(s)	120
LmnI	GCTCC	2 cut(s)	52, 181
LpnPI	CCDG	5 cut(s)	78, 95, 122, 179, 192
LweI	GCATC	2 cut(s)	369, 412
MaeII	ACGT	1 cut(s)	296
MalI	GATC	1 cut(s)	272
MboI	GATC	1 cut(s)	270
MboII	GAAGA	2 cut(s)	107, 265
MfeI	CAATTG	2 cut(s)	32, 288
MhlI	GDGCHC	1 cut(s)	178
MlsI	TGGCCA	1 cut(s)	399
MluCI	AATT	3 cut(s)	32, 224, 288
MluNI	TGGCCA	1 cut(s)	399
MmeI	TCCRAC	1 cut(s)	176
MnlI	CCTC	2 cut(s)	324, 396
Mox20I	TGGCCA	1 cut(s)	399
MscI	TGGCCA	1 cut(s)	399
MseI	TTAA	2 cut(s)	236, 448
MslI	CAYNNNNRTG	1 cut(s)	347
Msp20I	TGGCCA	1 cut(s)	399
MspR9I	CCNGG	1 cut(s)	110
MunI	CAATTG	2 cut(s)	32, 288
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	431
NdeII	GATC	1 cut(s)	270
NlaIII	CATG	3 cut(s)	140, 284, 352
NlaIV	GGNNCC	1 cut(s)	177
NspI	RCATGY	1 cut(s)	352
PagI	TCATGA	1 cut(s)	280
PciSI	GCTCTTC	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	284
PflFI	GACNNNGTC	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	384
Ppu21I	YACGTR	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	1 cut(s)	433
PstNI	CAGNNNCTG	1 cut(s)	65
PsyI	GACNNNGTC	1 cut(s)	208
RsaI	GTAC	2 cut(s)	15, 63
RsaNI	GTAC	2 cut(s)	14, 62
RseI	CAYNNNNRTG	1 cut(s)	347
SapI	GCTCTTC	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	236, 448
SatI	GCNGC	1 cut(s)	383
Sau3AI	GATC	1 cut(s)	270
Sau96I	GGNCC	1 cut(s)	433
ScaI	AGTACT	1 cut(s)	15
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	7 cut(s)	57, 67, 148, 212, 299, 316, 326
SfaNI	GCATC	2 cut(s)	369, 412
SmiMI	CAYNNNNRTG	1 cut(s)	347
SmlI	CTYRAG	2 cut(s)	41, 387
SmoI	CTYRAG	2 cut(s)	41, 387
Sse9I	AATT	3 cut(s)	32, 224, 288
SsiI	CCGC	1 cut(s)	382
StyD4I	CCNGG	1 cut(s)	108
TaiI	ACGT	1 cut(s)	299
TasI	AATT	3 cut(s)	32, 224, 288
TatI	WGTACW	1 cut(s)	13
TauI	GCSGC	1 cut(s)	385
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	2 cut(s)	236, 448
Tru9I	TTAA	2 cut(s)	236, 448
TspDTI	ATGAA	1 cut(s)	217
Tth111I	GACNNNGTC	1 cut(s)	208
XapI	RAATTY	1 cut(s)	224
XceI	RCATGY	1 cut(s)	352
XcmI	CCANNNNNNNNNTGG	2 cut(s)	134, 415
ZrmI	AGTACT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.