RLG00000017272

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0015812
Physical Location & Seq
Forward (+)
14778071 .. 14778532
462 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017272

Sequence Viewer

Length: 357 bp
ATGCGCAGGACACTATGGTTATTTGGCCAGTTACCAGGTTTCCAGCCAGATTTGTTTTCAAATCCATTCATTACCTATCGTTACTTCGTAACCTCTATGGCCCCTGGTTATGGCAGAAGAGAAAAGCAATTCAAAGGCGATCCCGACGAAGAGATCTTGGTTTATAGCACCATTAGATTGGGAATAGCATATAGATGTATTATAGCTCTTGCAACCCGGGATTGGGTCCAGACCCCCCCCCCCCCCCCAGCTGTTATTCCCGATTTGAACGGGGCTCCGCTGCCGCTCATTCCGGATCTCAATGCCCCGGATCAGGCGGGGCTTGCGAAAGAGATAGAGGCAACCAACGTGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.2

Weight (kDa)

5.29

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015812)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00285
fragaria_vesca FvH4_c1g00520
rosa_chinensis RchiOBHm_MTg0499211
rosa_laevigata RLG00000000016 RLG00000000081 RLG00000000123 RLG00000000367 RLG00000017272
rosa_multiflora Rmu_sc0000486.1_g000004
rosa_roxburghii Rroxscaffold_2G00119530 Rroxscaffold_2G00119540 Rroxscaffold_6G00392870
rosa_samantha Rh2BG107500 Rh2CG109300
rosa_wichuraiana Rw3G029490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
AccBSI CCGCTC 1 cut(s) 286
AccIII TCCGGA 1 cut(s) 292
AciI CCGC 3 cut(s) 278, 284, 317
AclWI GGATC 3 cut(s) 134, 303, 318
AcoI YGGCCR 1 cut(s) 25
AfiI CCNNNNNNNGG 4 cut(s) 110, 222, 223, 313
AgsI TTSAA 3 cut(s) 60, 133, 268
AjnI CCWGG 2 cut(s) 34, 103
AluBI AGCT 2 cut(s) 206, 251
AluI AGCT 2 cut(s) 206, 251
AlwI GGATC 3 cut(s) 134, 303, 318
Ama87I CYCGRG 1 cut(s) 216
Aor13HI TCCGGA 1 cut(s) 292
AoxI GGCC 2 cut(s) 25, 99
ApeKI GCWGC 1 cut(s) 280
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 2 cut(s) 100, 226
AsuC2I CCSGG 3 cut(s) 217, 218, 308
AvaI CYCGRG 1 cut(s) 216
AvaII GGWCC 1 cut(s) 226
BaeGI GKGCMC 1 cut(s) 354
BalI TGGCCA 1 cut(s) 27
BanII GRGCYC 1 cut(s) 277
BbvI GCAGC 1 cut(s) 267
BciT130I CCWGG 2 cut(s) 36, 105
BcnI CCSGG 3 cut(s) 217, 218, 308
BglII AGATCT 1 cut(s) 153
BisI GCNGC 2 cut(s) 281, 284
BlsI GCNGC 2 cut(s) 282, 285
Bme1390I CCNGG 5 cut(s) 36, 105, 217, 218, 308
Bme18I GGWCC 1 cut(s) 226
BmeT110I CYCGRG 1 cut(s) 216
BmgT120I GGNCC 2 cut(s) 100, 226
BmiI GGNNCC 3 cut(s) 102, 227, 276
BmrFI CCNGG 5 cut(s) 36, 105, 217, 218, 308
BpuMI CCSGG 3 cut(s) 217, 218, 308
BsaJI CCNNGG 3 cut(s) 103, 216, 306
BsaWI WCCGGW 1 cut(s) 292
Bsc4I CCNNNNNNNGG 4 cut(s) 110, 222, 223, 313
Bse1I ACTGG 1 cut(s) 28
BseAI TCCGGA 1 cut(s) 292
BseBI CCWGG 2 cut(s) 36, 105
BseDI CCNNGG 3 cut(s) 103, 216, 306
BseLI CCNNNNNNNGG 4 cut(s) 110, 222, 223, 313
BseNI ACTGG 1 cut(s) 28
BseSI GKGCMC 1 cut(s) 354
BseXI GCAGC 1 cut(s) 267
BseYI CCCAGC 1 cut(s) 247
BshFI GGCC 2 cut(s) 27, 101
BsiHKCI CYCGRG 1 cut(s) 216
BsiSI CCGG 3 cut(s) 217, 293, 308
BslI CCNNNNNNNGG 4 cut(s) 110, 222, 223, 313
BsnI GGCC 2 cut(s) 27, 101
BsoBI CYCGRG 1 cut(s) 216
Bsp1286I GDGCHC 2 cut(s) 277, 354
Bsp13I TCCGGA 1 cut(s) 292
Bsp143I GATC 4 cut(s) 139, 153, 295, 310
BspACI CCGC 3 cut(s) 278, 284, 317
BspANI GGCC 2 cut(s) 27, 101
BspEI TCCGGA 1 cut(s) 292
BspLI GGNNCC 3 cut(s) 102, 227, 276
BspPI GGATC 3 cut(s) 134, 303, 318
BsrBI CCGCTC 1 cut(s) 286
BsrI ACTGG 1 cut(s) 28
BssECI CCNNGG 3 cut(s) 103, 216, 306
BssMI GATC 4 cut(s) 139, 153, 295, 310
Bst2UI CCWGG 2 cut(s) 36, 105
Bst6I CTCTTC 2 cut(s) 112, 144
BstC8I GCNNGC 1 cut(s) 324
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 4 cut(s) 142, 156, 298, 313
BstMBI GATC 4 cut(s) 139, 153, 295, 310
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNI CCWGG 2 cut(s) 36, 105
BstSCI CCNGG 5 cut(s) 34, 103, 215, 216, 306
BstSLI GKGCMC 1 cut(s) 354
BstV1I GCAGC 1 cut(s) 267
BstX2I RGATCY 2 cut(s) 153, 295
BstXI CCANNNNNNTGG 1 cut(s) 178
BstYI RGATCY 2 cut(s) 153, 295
BsuRI GGCC 2 cut(s) 27, 101
Cac8I GCNNGC 1 cut(s) 324
CfoI GCGC 1 cut(s) 6
Cfr13I GGNCC 2 cut(s) 100, 226
Cfr9I CCCGGG 1 cut(s) 216
CsiI ACCWGGT 1 cut(s) 34
CviJI RGCY 7 cut(s) 27, 46, 101, 206, 251, 275, 322
CviKI_1 RGCY 7 cut(s) 27, 46, 101, 206, 251, 275, 322
DpnI GATC 4 cut(s) 141, 155, 297, 312
DpnII GATC 4 cut(s) 139, 153, 295, 310
EaeI YGGCCR 1 cut(s) 25
Eam1104I CTCTTC 2 cut(s) 112, 144
EarI CTCTTC 2 cut(s) 112, 144
Eco24I GRGCYC 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 226
Eco88I CYCGRG 1 cut(s) 216
EcoRII CCWGG 2 cut(s) 34, 103
EcoT38I GRGCYC 1 cut(s) 277
FaiI YATR 7 cut(s) 16, 98, 111, 165, 190, 192, 203
FauI CCCGC 1 cut(s) 310
Fnu4HI GCNGC 2 cut(s) 281, 284
FriOI GRGCYC 1 cut(s) 277
Fsp4HI GCNGC 2 cut(s) 281, 284
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 2 cut(s) 281, 284
GsaI CCCAGC 1 cut(s) 251
HaeIII GGCC 2 cut(s) 27, 101
HapII CCGG 3 cut(s) 217, 293, 308
HhaI GCGC 1 cut(s) 6
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HpaII CCGG 3 cut(s) 217, 293, 308
Hpy188III TCNNGA 4 cut(s) 143, 229, 260, 293
Hpy99I CGWCG 1 cut(s) 149
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpySE526I ACGT 1 cut(s) 348
HspAI GCGC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 292
Kzo9I GATC 4 cut(s) 139, 153, 295, 310
LmnI GCTCC 1 cut(s) 280
Lsp1109I GCAGC 1 cut(s) 267
MabI ACCWGGT 1 cut(s) 34
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 3 cut(s) 30, 80, 88
MalI GATC 4 cut(s) 141, 155, 297, 312
MbiI CCGCTC 1 cut(s) 286
MboI GATC 4 cut(s) 139, 153, 295, 310
MboII GAAGA 2 cut(s) 129, 161
MflI RGATCY 2 cut(s) 153, 295
MhlI GDGCHC 2 cut(s) 277, 354
MlsI TGGCCA 1 cut(s) 27
MluCI AATT 1 cut(s) 128
MluNI TGGCCA 1 cut(s) 27
MnlI CCTC 2 cut(s) 103, 331
Mox20I TGGCCA 1 cut(s) 27
MroI TCCGGA 1 cut(s) 292
MscI TGGCCA 1 cut(s) 27
MslI CAYNNNNRTG 1 cut(s) 193
Msp20I TGGCCA 1 cut(s) 27
MspA1I CMGCKG 2 cut(s) 251, 280
MspI CCGG 3 cut(s) 217, 293, 308
MspR9I CCNGG 5 cut(s) 36, 105, 217, 218, 308
MvaI CCWGG 2 cut(s) 36, 105
MwoI GCNNNNNNNGC 1 cut(s) 323
NciI CCSGG 3 cut(s) 217, 218, 308
NdeII GATC 4 cut(s) 139, 153, 295, 310
NlaIV GGNNCC 3 cut(s) 102, 227, 276
NsbI TGCGCA 1 cut(s) 5
PkrI GCNGC 2 cut(s) 282, 285
Psp6I CCWGG 2 cut(s) 34, 103
PspFI CCCAGC 1 cut(s) 247
PspGI CCWGG 2 cut(s) 34, 103
PspN4I GGNNCC 3 cut(s) 102, 227, 276
PspPI GGNCC 2 cut(s) 100, 226
PsuI RGATCY 2 cut(s) 153, 295
PvuII CAGCTG 1 cut(s) 251
RseI CAYNNNNRTG 1 cut(s) 193
SatI GCNGC 2 cut(s) 281, 284
Sau3AI GATC 4 cut(s) 139, 153, 295, 310
Sau96I GGNCC 2 cut(s) 100, 226
ScrFI CCNGG 5 cut(s) 36, 105, 217, 218, 308
SduI GDGCHC 2 cut(s) 277, 354
SetI ASST 6 cut(s) 40, 77, 95, 208, 253, 351
SexAI ACCWGGT 1 cut(s) 34
SinI GGWCC 1 cut(s) 226
SmaI CCCGGG 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 193
Sse9I AATT 1 cut(s) 128
SsiI CCGC 3 cut(s) 278, 284, 317
StyD4I CCNGG 5 cut(s) 34, 103, 215, 216, 306
TaiI ACGT 1 cut(s) 351
TasI AATT 1 cut(s) 128
TauI GCSGC 1 cut(s) 286
TseI GCWGC 1 cut(s) 280
TspDTI ATGAA 1 cut(s) 58
TspMI CCCGGG 1 cut(s) 216
VpaK11BI GGWCC 1 cut(s) 226
XmaI CCCGGG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.