FvH4_1g02430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014628
Physical Location & Seq
Reverse (-)
1345647 .. 1346807
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02430.t1

Sequence Viewer

Length: 1161 bp
ATGGAAGAAGACCAACCAAAGCAAGACAGCCCACGAGTCCTCAAAGTCCTCGAAGCTCTGAAACAAGCCTCCCAGGAGCTCCAGACTCCCGACTCGCCCGAGTCCAACTCGTCCGCCATCAACGCCCTCCTCGAGCTCGAGACCGAGTCCGACTCGCTCCTCTCCCGCGACCCACATCTCTCCACTCTCTCCCACCACCTCGCCACCCTCAAAACCCTCGTCGCTTCTCTCCGCAAATCCACCCACCACCACTCCCTACGCTCCTTCCTGACTCGCCGCGCCTCGACTCAGTCGCTGAGTCGACTCGCCGGCTCGATCGAGTCCGAAATCCAAGCCTGGATTGACCGCGAGAGCCTCGACACGTTGACAAAAGCTCTGAAACAACAAGACAACGAGGAGGAGCTGATCAAGCTGCTGTCTCAGTTCGAGGACCGAGTTTTACGGGGCTTCGACCGCGAGCTGCAGGACTTGGTGTTGAAGACAAGAGTGTTCAACTTGATTGAGTCTTGTCTCTGCGATTCGAACAGCTCCAACCGTGTTAGGGAACACTGCGCATTTGTTATCGTTGGTCTGATCAAGTTCAACAAGGATGTCTTTGTCGGTCAAGTACTAATGGGCGCGACCATAAAAGCGTTGCTGACAATGGCTTCGCCTAACTCGATTAGAGTGTTGTGTAGTTTGGTTAGAATCATTAAGTCACCGTTGGTGGATGAGATTGAGTTTAATAGGCAGATACCGAAGATTATAAGTCTATTGAATTGGGATGATAGTGAGATGAGAGTGATGGGATTTGGTTGTGTGCTTGAGATTGGTTACTTCGGGCGCAAGGAAGCGATTGATGCAATGTTGGAGGAAGGTTTGGTGGAGAAGCTTGTGGAGTTGCAGAGATCCGAGCTTGGTGGGGATATGATGGAACTTGAAATGTGTGACGAGGAAGGCGAAAACAAGGAAGGAGAAAAAGAGAAGAGGTTGTTGGAGAGGCGGCCGTTTTCGAGCTGTGTGGCGAGGTTTGCTGTGCAGTTGGAGGTGGGTGAGGGATTGAGGCAGAGAGAGAGGAGGGCGTTTAAGCAGCAGATATTGGTGAGAGTTAGAGAAGCATCCATTTCTGATGCAGAGGCTGCTACTATCATTGCTGAGGTTTTGTGGGGGTCTTCACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

387

Amino Acids

43.6

Weight (kDa)

5.25

Isoelectric Point (pI)

55.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014628)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02430
malus_domestica MD02G1021100.v1.1 MD15G1164200.v1.1
prunus_persica Prupe.7G250400_v2.0.a1
pyrus_communis pycom02g01870 pycom05g21450 pycom15g14730
rosa_chinensis RchiOBHm_Chr2g0087391
rosa_laevigata RLG00000015862
rosa_multiflora Rmu_sc0006064.1_g000006
rosa_roxburghii Rroxscaffold_2G00153600
rosa_rugosa Rorug01G0474800
rosa_samantha Rh2AG028300 Rh2BG028200 Rh2CG028500 Rh2DG028300
rosa_wichuraiana Rw2G002250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 746
Acc16I TGCGCA 1 cut(s) 553
AccI GTMKAC 1 cut(s) 301
AccII CGCG 5 cut(s) 168, 279, 348, 456, 620
AciI CCGC 7 cut(s) 114, 166, 232, 277, 346, 454, 982
AclWI GGATC 1 cut(s) 882
AcoI YGGCCR 1 cut(s) 983
AfaI GTAC 1 cut(s) 609
AfiI CCNNNNNNNGG 1 cut(s) 541
AflIII ACRYGT 1 cut(s) 360
AgsI TTSAA 5 cut(s) 478, 493, 583, 757, 920
AjnI CCWGG 2 cut(s) 72, 335
AjuI GAANNNNNNNTTGG 2 cut(s) 956, 988
Alw21I GWGCWC 2 cut(s) 81, 138
Alw26I GTCTC 3 cut(s) 134, 423, 515
AlwI GGATC 1 cut(s) 882
AlwNI CAGNNNCTG 2 cut(s) 295, 1118
Ama87I CYCGRG 3 cut(s) 98, 131, 137
AoxI GGCC 1 cut(s) 983
ApeKI GCWGC 4 cut(s) 412, 460, 1069, 1118
ArsI GACNNNNNNTTYG 4 cut(s) 204, 236, 631, 663
AspLEI GCGC 4 cut(s) 281, 554, 620, 825
AspS9I GGNCC 1 cut(s) 430
AsuHPI GGTGA 4 cut(s) 690, 1043, 1093, 1146
AsuII TTCGAA 1 cut(s) 521
AvaI CYCGRG 3 cut(s) 98, 131, 137
AvaII GGWCC 1 cut(s) 430
BanII GRGCYC 2 cut(s) 81, 138
BauI CACGAG 1 cut(s) 33
BbsI GAAGAC 3 cut(s) 15, 485, 1143
Bbv12I GWGCWC 2 cut(s) 81, 138
BbvCI CCTCAGC 1 cut(s) 1134
BbvI GCAGC 4 cut(s) 399, 447, 1081, 1105
BccI CCATC 3 cut(s) 125, 778, 904
BceAI ACGGC 1 cut(s) 970
BciT130I CCWGG 2 cut(s) 74, 337
BclI TGATCA 2 cut(s) 405, 573
BcoDI GTCTC 3 cut(s) 134, 423, 515
BfmI CTRYAG 1 cut(s) 461
BisI GCNGC 6 cut(s) 277, 413, 461, 983, 1070, 1119
BlsI GCNGC 6 cut(s) 278, 414, 462, 984, 1071, 1120
BmcAI AGTACT 1 cut(s) 609
Bme1390I CCNGG 2 cut(s) 74, 337
Bme18I GGWCC 1 cut(s) 430
BmeT110I CYCGRG 3 cut(s) 98, 131, 137
BmgT120I GGNCC 1 cut(s) 430
BmrFI CCNGG 2 cut(s) 74, 337
BmsI GCATC 3 cut(s) 829, 1099, 1106
BpiI GAAGAC 3 cut(s) 15, 485, 1143
BplI GAGNNNNNCTC 4 cut(s) 92, 124, 137, 169
BpmI CTGGAG 1 cut(s) 65
Bpu10I CCTNAGC 1 cut(s) 1134
Bpu14I TTCGAA 1 cut(s) 521
BpuEI CTTGAG 1 cut(s) 824
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 1 cut(s) 541
Bse118I RCCGGY 1 cut(s) 308
Bse3DI GCAATG 2 cut(s) 849, 1128
BseBI CCWGG 2 cut(s) 74, 337
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 4 cut(s) 595, 715, 769, 1097
BseLI CCNNNNNNNGG 1 cut(s) 541
BseMI GCAATG 2 cut(s) 849, 1128
BseMII CTCAG 4 cut(s) 287, 302, 434, 1125
BseRI GAGGAG 5 cut(s) 119, 149, 410, 413, 1069
BseX3I CGGCCG 1 cut(s) 983
BseXI GCAGC 4 cut(s) 399, 447, 1081, 1105
BsgI GTGCAG 1 cut(s) 1037
Bsh1236I CGCG 5 cut(s) 168, 279, 348, 456, 620
Bsh1285I CGRYCG 3 cut(s) 318, 454, 986
BshFI GGCC 1 cut(s) 985
BsiEI CGRYCG 3 cut(s) 318, 454, 986
BsiHKAI GWGCWC 2 cut(s) 81, 138
BsiHKCI CYCGRG 3 cut(s) 98, 131, 137
BsiSI CCGG 1 cut(s) 309
BslI CCNNNNNNNGG 1 cut(s) 541
BsmAI GTCTC 3 cut(s) 134, 423, 515
BsnI GGCC 1 cut(s) 985
Bso31I GGTCTC 1 cut(s) 134
BsoBI CYCGRG 3 cut(s) 98, 131, 137
Bsp119I TTCGAA 1 cut(s) 521
Bsp1286I GDGCHC 2 cut(s) 81, 138
Bsp143I GATC 4 cut(s) 315, 405, 573, 887
BspACI CCGC 7 cut(s) 114, 166, 232, 277, 346, 454, 982
BspANI GGCC 1 cut(s) 985
BspCNI CTCAG 4 cut(s) 288, 301, 433, 1126
BspFNI CGCG 5 cut(s) 168, 279, 348, 456, 620
BspMAI CTGCAG 1 cut(s) 465
BspPI GGATC 1 cut(s) 882
BspT104I TTCGAA 1 cut(s) 521
BspTNI GGTCTC 1 cut(s) 134
BsrDI GCAATG 2 cut(s) 849, 1128
BsrFI RCCGGY 1 cut(s) 308
BssAI RCCGGY 1 cut(s) 308
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 4 cut(s) 315, 405, 573, 887
BssSI CACGAG 1 cut(s) 33
Bst2BI CACGAG 1 cut(s) 33
Bst2UI CCWGG 2 cut(s) 74, 337
Bst4CI ACNGT 2 cut(s) 536, 702
Bst6I CTCTTC 1 cut(s) 959
BstAPI GCANNNNNTGC 1 cut(s) 1118
BstBI TTCGAA 1 cut(s) 521
BstC8I GCNNGC 2 cut(s) 310, 458
BstDEI CTNAG 5 cut(s) 288, 296, 420, 1134, 1158
BstF5I GGATG 4 cut(s) 595, 715, 769, 1097
BstFNI CGCG 5 cut(s) 168, 279, 348, 456, 620
BstHHI GCGC 4 cut(s) 281, 554, 620, 825
BstKTI GATC 4 cut(s) 318, 408, 576, 890
BstMAI GTCTC 3 cut(s) 134, 423, 515
BstMBI GATC 4 cut(s) 315, 405, 573, 887
BstMCI CGRYCG 3 cut(s) 318, 454, 986
BstMWI GCNNNNNNNGC 6 cut(s) 122, 409, 453, 839, 1010, 1118
BstNI CCWGG 2 cut(s) 74, 337
BstSCI CCNGG 2 cut(s) 72, 335
BstSFI CTRYAG 1 cut(s) 461
BstUI CGCG 5 cut(s) 168, 279, 348, 456, 620
BstV1I GCAGC 4 cut(s) 399, 447, 1081, 1105
BstV2I GAAGAC 3 cut(s) 15, 485, 1143
BstX2I RGATCY 1 cut(s) 887
BstYI RGATCY 1 cut(s) 887
BstZI CGGCCG 1 cut(s) 983
BsuRI GGCC 1 cut(s) 985
BtsCI GGATG 4 cut(s) 595, 715, 769, 1097
BtsI GCAGTG 1 cut(s) 547
BtsIMutI CAGTG 1 cut(s) 547
Cac8I GCNNGC 2 cut(s) 310, 458
CaiI CAGNNNCTG 2 cut(s) 295, 1118
CfoI GCGC 4 cut(s) 281, 554, 620, 825
Cfr10I RCCGGY 1 cut(s) 308
Cfr13I GGNCC 1 cut(s) 430
Csp6I GTAC 1 cut(s) 608
CviQI GTAC 1 cut(s) 608
DdeI CTNAG 5 cut(s) 288, 296, 420, 1134, 1158
DpnI GATC 4 cut(s) 317, 407, 575, 889
DpnII GATC 4 cut(s) 315, 405, 573, 887
EaeI YGGCCR 1 cut(s) 983
EagI CGGCCG 1 cut(s) 983
Eam1104I CTCTTC 1 cut(s) 959
EarI CTCTTC 1 cut(s) 959
EciI GGCGGA 1 cut(s) 103
Ecl136II GAGCTC 2 cut(s) 79, 136
EclXI CGGCCG 1 cut(s) 983
Eco24I GRGCYC 2 cut(s) 81, 138
Eco31I GGTCTC 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 430
Eco52I CGGCCG 1 cut(s) 983
Eco53kI GAGCTC 2 cut(s) 79, 136
Eco88I CYCGRG 3 cut(s) 98, 131, 137
EcoICRI GAGCTC 2 cut(s) 79, 136
EcoRII CCWGG 2 cut(s) 72, 335
EcoT38I GRGCYC 2 cut(s) 81, 138
FaiI YATR 3 cut(s) 626, 746, 908
FalI AAGNNNNNCTT 2 cut(s) 578, 610
FauI CCCGC 1 cut(s) 173
FbaI TGATCA 2 cut(s) 405, 573
FblI GTMKAC 1 cut(s) 301
Fnu4HI GCNGC 6 cut(s) 277, 413, 461, 983, 1070, 1119
FokI GGATG 4 cut(s) 602, 722, 776, 1084
FriOI GRGCYC 2 cut(s) 81, 138
Fsp4HI GCNGC 6 cut(s) 277, 413, 461, 983, 1070, 1119
FspI TGCGCA 1 cut(s) 553
GlaI GCGC 4 cut(s) 280, 553, 619, 824
GluI GCNGC 6 cut(s) 277, 413, 461, 983, 1070, 1119
GsuI CTGGAG 1 cut(s) 65
HaeIII GGCC 1 cut(s) 985
HapII CCGG 1 cut(s) 309
HhaI GCGC 4 cut(s) 281, 554, 620, 825
Hin6I GCGC 4 cut(s) 279, 552, 618, 823
HinP1I GCGC 4 cut(s) 279, 552, 618, 823
HincII GTYRAC 2 cut(s) 302, 366
HindII GTYRAC 2 cut(s) 302, 366
HindIII AAGCTT 1 cut(s) 869
HpaII CCGG 1 cut(s) 309
HphI GGTGA 4 cut(s) 690, 1043, 1093, 1146
Hpy166II GTNNAC 2 cut(s) 302, 366
Hpy188I TCNGA 7 cut(s) 60, 151, 325, 378, 573, 892, 1108
Hpy188III TCNNGA 4 cut(s) 82, 89, 139, 268
Hpy8I GTNNAC 2 cut(s) 302, 366
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 4 cut(s) 274, 848, 929, 944
HpyCH4III ACNGT 2 cut(s) 536, 702
HpyCH4IV ACGT 1 cut(s) 362
HpyCH4V TGCA 5 cut(s) 463, 842, 883, 1018, 1112
HpyF10VI GCNNNNNNNGC 6 cut(s) 122, 409, 453, 839, 1010, 1118
HpyF3I CTNAG 5 cut(s) 288, 296, 420, 1134, 1158
HpySE526I ACGT 1 cut(s) 362
HspAI GCGC 4 cut(s) 279, 552, 618, 823
KroI GCCGGC 1 cut(s) 308
KroNI GCCGGC 1 cut(s) 310
Ksp22I TGATCA 2 cut(s) 405, 573
Kzo9I GATC 4 cut(s) 315, 405, 573, 887
LmnI GCTCC 6 cut(s) 76, 84, 162, 266, 400, 533
LpnPI CCDG 8 cut(s) 59, 86, 95, 281, 322, 322, 349, 449
Lsp1109I GCAGC 4 cut(s) 399, 447, 1081, 1105
LweI GCATC 3 cut(s) 829, 1099, 1106
MaeII ACGT 1 cut(s) 362
MaeIII GTNAC 3 cut(s) 696, 812, 926
MalI GATC 4 cut(s) 317, 407, 575, 889
MboI GATC 4 cut(s) 315, 405, 573, 887
MboII GAAGA 6 cut(s) 17, 20, 490, 751, 976, 1143
MflI RGATCY 1 cut(s) 887
MhlI GDGCHC 2 cut(s) 81, 138
MluCI AATT 1 cut(s) 757
MmeI TCCRAC 6 cut(s) 129, 174, 555, 828, 954, 1002
MroNI GCCGGC 1 cut(s) 308
MseI TTAA 3 cut(s) 693, 723, 1065
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 2 cut(s) 74, 337
MvaI CCWGG 2 cut(s) 74, 337
MvnI CGCG 5 cut(s) 168, 279, 348, 456, 620
MwoI GCNNNNNNNGC 6 cut(s) 122, 409, 453, 839, 1010, 1118
NaeI GCCGGC 1 cut(s) 310
NdeII GATC 4 cut(s) 315, 405, 573, 887
NgoMIV GCCGGC 1 cut(s) 308
NmuCI GTSAC 2 cut(s) 696, 926
NsbI TGCGCA 1 cut(s) 553
NspV TTCGAA 1 cut(s) 521
PaeR7I CTCGAG 2 cut(s) 131, 137
PcsI WCGNNNNNNNCGW 3 cut(s) 129, 656, 936
PdiI GCCGGC 1 cut(s) 310
PfeI GAWTC 2 cut(s) 518, 687
PflFI GACNNNGTC 2 cut(s) 145, 289
PkrI GCNGC 6 cut(s) 278, 414, 462, 984, 1071, 1120
Ple19I CGATCG 1 cut(s) 318
PsiI TTATAA 1 cut(s) 746
Psp124BI GAGCTC 2 cut(s) 81, 138
Psp6I CCWGG 2 cut(s) 72, 335
PspGI CCWGG 2 cut(s) 72, 335
PspPI GGNCC 1 cut(s) 430
PspXI VCTCGAGB 1 cut(s) 131
PstI CTGCAG 1 cut(s) 465
PstNI CAGNNNCTG 2 cut(s) 295, 1118
PsuI RGATCY 1 cut(s) 887
PsyI GACNNNGTC 2 cut(s) 145, 289
PvuI CGATCG 1 cut(s) 318
RsaI GTAC 1 cut(s) 609
RsaNI GTAC 1 cut(s) 608
SacI GAGCTC 2 cut(s) 81, 138
SalI GTCGAC 1 cut(s) 300
SaqAI TTAA 3 cut(s) 693, 723, 1065
SatI GCNGC 6 cut(s) 277, 413, 461, 983, 1070, 1119
Sau3AI GATC 4 cut(s) 315, 405, 573, 887
Sau96I GGNCC 1 cut(s) 430
ScaI AGTACT 1 cut(s) 609
ScrFI CCNGG 2 cut(s) 74, 337
SduI GDGCHC 2 cut(s) 81, 138
SfaNI GCATC 3 cut(s) 829, 1099, 1106
SfcI CTRYAG 1 cut(s) 461
Sfr274I CTCGAG 2 cut(s) 131, 137
SfuI TTCGAA 1 cut(s) 521
SinI GGWCC 1 cut(s) 430
SlaI CTCGAG 2 cut(s) 131, 137
SmlI CTYRAG 3 cut(s) 131, 137, 803
SmoI CTYRAG 3 cut(s) 131, 137, 803
Sse9I AATT 1 cut(s) 757
SsiI CCGC 7 cut(s) 114, 166, 232, 277, 346, 454, 982
SstI GAGCTC 2 cut(s) 81, 138
StyD4I CCNGG 2 cut(s) 72, 335
TaaI ACNGT 2 cut(s) 536, 702
TaiI ACGT 1 cut(s) 365
TaqII GACCGA 3 cut(s) 158, 447, 590
TasI AATT 1 cut(s) 757
TatI WGTACW 1 cut(s) 607
TauI GCSGC 2 cut(s) 279, 985
TfiI GAWTC 2 cut(s) 518, 687
Tru1I TTAA 3 cut(s) 693, 723, 1065
Tru9I TTAA 3 cut(s) 693, 723, 1065
TscAI CASTG 1 cut(s) 554
TseFI GTSAC 2 cut(s) 696, 926
TseI GCWGC 4 cut(s) 412, 460, 1069, 1118
Tsp45I GTSAC 2 cut(s) 696, 926
TspRI CASTG 1 cut(s) 554
Tth111I GACNNNGTC 2 cut(s) 145, 289
VpaK11BI GGWCC 1 cut(s) 430
XhoI CTCGAG 2 cut(s) 131, 137
XmiI GTMKAC 1 cut(s) 301
ZrmI AGTACT 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.