pycom02g01870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0014628
Physical Location & Seq
Reverse (-)
1111717 .. 1112232
516 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g01870.1

Sequence Viewer

Length: 516 bp
ATGGGTCGGCCGACGATTAGCTCTCTGATAAAAATGGCATCACCGGACGCGATCAGAGTGCTCTGCGCGCTCGTCAGGCTGATCAAATCGCCGCTCGTCGAAGAGATCGAGTTCAACGGAGAAATACCAAAGATCATAAGCTTCCTGAATTCTGAAGATTTGGAAATGCGAGTGATGGCGATGGTCTGCGTGGTGGAAATCGGTTATTTCGGGCGGAAGGAAGCCATTGATGCGATGCTAGAGGAGGGGTTGATTGAGAAGCTTATGGAGTTGCAGAGGTCGGAGCACGGCGGCGATTTGATGAGGGAGAGCAGGGAGAAGGGGTTCTTGGAGAGGCACCCGTTTGCGAGCTGCGTGGCGAGGTTCGCGGTGCAGTTAGAGGTGGGGGAGGGGCTGAGGCAGCGGGAGAGGAGGGCGTTTAAGCAGCAGATATTGGTGAGAGTGAGGGAGGCCTCCGTTTCCGAAGCGGAGGCCGCCACCCTTTCTGCGGAGGTTTTGTGGGGGGCTTCGCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.19

Weight (kDa)

5.41

Isoelectric Point (pI)

51.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014628)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02430
malus_domestica MD02G1021100.v1.1 MD15G1164200.v1.1
prunus_persica Prupe.7G250400_v2.0.a1
pyrus_communis pycom02g01870 pycom05g21450 pycom15g14730
rosa_chinensis RchiOBHm_Chr2g0087391
rosa_laevigata RLG00000015862
rosa_multiflora Rmu_sc0006064.1_g000006
rosa_roxburghii Rroxscaffold_2G00153600
rosa_rugosa Rorug01G0474800
rosa_samantha Rh2AG028300 Rh2BG028200 Rh2CG028500 Rh2DG028300
rosa_wichuraiana Rw2G002250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 336
AccBSI CCGCTC 1 cut(s) 94
AccII CGCG 3 cut(s) 50, 68, 368
AciI CCGC 8 cut(s) 92, 214, 291, 368, 403, 467, 474, 488
AcoI YGGCCR 1 cut(s) 8
AcsI RAATTY 1 cut(s) 148
AcuI CTGAAG 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 487
AgsI TTSAA 1 cut(s) 115
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
AloI GAACNNNNNNTCC 2 cut(s) 308, 340
AluBI AGCT 4 cut(s) 21, 141, 262, 351
AluI AGCT 4 cut(s) 21, 141, 262, 351
Alw21I GWGCWC 2 cut(s) 63, 288
AoxI GGCC 3 cut(s) 8, 450, 471
ApeKI GCWGC 3 cut(s) 351, 400, 424
ApoI RAATTY 1 cut(s) 148
Asp700I GAANNNNTTC 1 cut(s) 323
AspLEI GCGC 2 cut(s) 68, 70
AsuHPI GGTGA 2 cut(s) 33, 448
BanI GGYRCC 1 cut(s) 336
Bbv12I GWGCWC 2 cut(s) 63, 288
BbvCI CCTCAGC 1 cut(s) 395
BbvI GCAGC 3 cut(s) 338, 412, 436
BccI CCATC 2 cut(s) 169, 175
BceAI ACGGC 2 cut(s) 304, 496
BcgI CGANNNNNNTGC 2 cut(s) 40, 74
BclI TGATCA 1 cut(s) 81
BfaI CTAG 1 cut(s) 239
BisI GCNGC 6 cut(s) 92, 292, 352, 401, 425, 474
BlsI GCNGC 6 cut(s) 93, 293, 353, 402, 426, 475
BmiI GGNNCC 1 cut(s) 338
BmsI GCATC 3 cut(s) 47, 220, 225
Bpu10I CCTNAGC 1 cut(s) 395
BsaWI WCCGGW 1 cut(s) 43
BsaXI ACNNNNNCTCC 4 cut(s) 308, 338, 482, 512
Bsc4I CCNNNNNNNGG 1 cut(s) 487
BseLI CCNNNNNNNGG 1 cut(s) 487
BseMII CTCAG 1 cut(s) 386
BsePI GCGCGC 1 cut(s) 66
BseRI GAGGAG 2 cut(s) 257, 424
BseX3I CGGCCG 1 cut(s) 8
BseXI GCAGC 3 cut(s) 338, 412, 436
BsgI GTGCAG 1 cut(s) 392
Bsh1236I CGCG 3 cut(s) 50, 68, 368
Bsh1285I CGRYCG 1 cut(s) 11
BshFI GGCC 3 cut(s) 10, 452, 473
BshNI GGYRCC 1 cut(s) 336
BsiEI CGRYCG 1 cut(s) 11
BsiHKAI GWGCWC 2 cut(s) 63, 288
BsiSI CCGG 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 487
BsnI GGCC 3 cut(s) 10, 452, 473
Bsp1286I GDGCHC 2 cut(s) 63, 288
Bsp143I GATC 4 cut(s) 51, 81, 105, 132
BspACI CCGC 8 cut(s) 92, 214, 291, 368, 403, 467, 474, 488
BspANI GGCC 3 cut(s) 10, 452, 473
BspCNI CTCAG 1 cut(s) 387
BspFNI CGCG 3 cut(s) 50, 68, 368
BspLI GGNNCC 1 cut(s) 338
BspT107I GGYRCC 1 cut(s) 336
BsrBI CCGCTC 1 cut(s) 94
BssHII GCGCGC 1 cut(s) 66
BssMI GATC 4 cut(s) 51, 81, 105, 132
Bst6I CTCTTC 1 cut(s) 96
BstC8I GCNNGC 2 cut(s) 68, 349
BstDEI CTNAG 1 cut(s) 395
BstFNI CGCG 3 cut(s) 50, 68, 368
BstHHI GCGC 2 cut(s) 68, 70
BstKTI GATC 4 cut(s) 54, 84, 108, 135
BstMBI GATC 4 cut(s) 51, 81, 105, 132
BstMCI CGRYCG 1 cut(s) 11
BstMWI GCNNNNNNNGC 6 cut(s) 67, 76, 230, 365, 400, 473
BstUI CGCG 3 cut(s) 50, 68, 368
BstV1I GCAGC 3 cut(s) 338, 412, 436
BstZI CGGCCG 1 cut(s) 8
BsuRI GGCC 3 cut(s) 10, 452, 473
BtgZI GCGATG 2 cut(s) 194, 248
Cac8I GCNNGC 2 cut(s) 68, 349
CfoI GCGC 2 cut(s) 68, 70
CseI GACGC 1 cut(s) 56
DdeI CTNAG 1 cut(s) 395
DpnI GATC 4 cut(s) 53, 83, 107, 134
DpnII GATC 4 cut(s) 51, 81, 105, 132
EaeI YGGCCR 1 cut(s) 8
EagI CGGCCG 1 cut(s) 8
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
EciI GGCGGA 1 cut(s) 229
EclXI CGGCCG 1 cut(s) 8
Eco147I AGGCCT 1 cut(s) 452
Eco52I CGGCCG 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 174
EcoRI GAATTC 1 cut(s) 148
FaiI YATR 2 cut(s) 137, 266
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FauI CCCGC 1 cut(s) 396
FbaI TGATCA 1 cut(s) 81
Fnu4HI GCNGC 6 cut(s) 92, 292, 352, 401, 425, 474
Fsp4HI GCNGC 6 cut(s) 92, 292, 352, 401, 425, 474
FspBI CTAG 1 cut(s) 239
GlaI GCGC 2 cut(s) 67, 69
GluI GCNGC 6 cut(s) 92, 292, 352, 401, 425, 474
HaeIII GGCC 3 cut(s) 10, 452, 473
HapII CCGG 1 cut(s) 44
HgaI GACGC 1 cut(s) 56
HhaI GCGC 2 cut(s) 68, 70
Hin6I GCGC 2 cut(s) 66, 68
HinP1I GCGC 2 cut(s) 66, 68
HindIII AAGCTT 2 cut(s) 139, 260
HpaII CCGG 1 cut(s) 44
HphI GGTGA 2 cut(s) 33, 448
Hpy188I TCNGA 5 cut(s) 27, 56, 154, 283, 463
Hpy188III TCNNGA 1 cut(s) 145
Hpy99I CGWCG 2 cut(s) 16, 101
HpyAV CCTTC 2 cut(s) 211, 313
HpyCH4V TGCA 2 cut(s) 274, 373
HpyF10VI GCNNNNNNNGC 6 cut(s) 67, 76, 230, 365, 400, 473
HpyF3I CTNAG 1 cut(s) 395
HspAI GCGC 2 cut(s) 66, 68
Ksp22I TGATCA 1 cut(s) 81
Kzo9I GATC 4 cut(s) 51, 81, 105, 132
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 4 cut(s) 57, 61, 158, 298
Lsp1109I GCAGC 3 cut(s) 338, 412, 436
LweI GCATC 3 cut(s) 47, 220, 225
MaeI CTAG 1 cut(s) 239
MalI GATC 4 cut(s) 53, 83, 107, 134
MbiI CCGCTC 1 cut(s) 94
MboI GATC 4 cut(s) 51, 81, 105, 132
MboII GAAGA 2 cut(s) 113, 167
MhlI GDGCHC 2 cut(s) 63, 288
MluCI AATT 1 cut(s) 148
MmeI TCCRAC 1 cut(s) 261
MroXI GAANNNNTTC 1 cut(s) 323
MseI TTAA 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 403
MspI CCGG 1 cut(s) 44
MvnI CGCG 3 cut(s) 50, 68, 368
MwoI GCNNNNNNNGC 6 cut(s) 67, 76, 230, 365, 400, 473
NdeII GATC 4 cut(s) 51, 81, 105, 132
NlaIV GGNNCC 1 cut(s) 338
PauI GCGCGC 1 cut(s) 66
PceI AGGCCT 1 cut(s) 452
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 323
PkrI GCNGC 6 cut(s) 93, 293, 353, 402, 426, 475
PspN4I GGNNCC 1 cut(s) 338
PteI GCGCGC 1 cut(s) 66
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 6 cut(s) 92, 292, 352, 401, 425, 474
Sau3AI GATC 4 cut(s) 51, 81, 105, 132
SduI GDGCHC 2 cut(s) 63, 288
SetI ASST 8 cut(s) 23, 143, 264, 281, 353, 365, 384, 495
SfaNI GCATC 3 cut(s) 47, 220, 225
Sse9I AATT 1 cut(s) 148
SseBI AGGCCT 1 cut(s) 452
SsiI CCGC 8 cut(s) 92, 214, 291, 368, 403, 467, 474, 488
SspMI CTAG 1 cut(s) 239
StuI AGGCCT 1 cut(s) 452
TaqI TCGA 2 cut(s) 99, 108
TasI AATT 1 cut(s) 148
TauI GCSGC 3 cut(s) 94, 294, 476
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TseI GCWGC 3 cut(s) 351, 400, 424
TspGWI ACGGA 2 cut(s) 132, 445
XapI RAATTY 1 cut(s) 148
XmnI GAANNNNTTC 1 cut(s) 323
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.