Prupe.7G250400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014628
Physical Location & Seq
Forward (+)
21186234 .. 21188223
1990 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G250400.1

Sequence Viewer

Length: 1218 bp
ATGGAAGACCACCAACCAAAGCAAGGCAGCCCGCGAGTTCTCCAGGTCCTGGAAGCTCTAAAACAAGCCTCCCATGAGCTCCAAACCCACCCGAGTCCAGACTCGGCCGATTCAAACTCGTCCGCCATTAATGCTCTGCTCGAGCTCGAGACCGAGTCTGACAACATCCTCTCCAAAGACCCACATCTCTCTACGCTCTCCCAACACCTCGCAACCCTCAAGAACCTCGTCGAGACCCTCAAGACATCCAAAGGCCACCACAGCATCAGGTCGTTTTTAACTCGCTGCTGCTCGACTCACTGCCTGTCCCGGCTGGCCGGGTCGATCGAGTCAGAAATCCAAGCGTGGATCGACCGCGAGAGCTTAGAGAGCTTGACGAGAGCTCTGAAAGAGCCACTTCACAATGAGGACGAGTTGGTTAAGCTCCTGAATCAGTTCGAGGACCGAGTTTTGCAGGGTTTCAATCGCGAGTTGCAAGATTTGATTTTGAAGTCCAAAGTTTTCACTCTGCTCGAGTCTGTTCTCTGCGATTCTCACTGTTCCAAACGAGTTAGGGAACGCTCGGCTTTCGCCATAGCAGCTCTGATAAACTTCAACAAGGATGTGTTTGTGGGTCAAGTGCTAATGGGTCGAACGATCAAGGCTTTACTAACAATGGCTTCCCCGAATGCGATCAGAGTGCTATGTACCCTGATCAGATTGATAAAGTCTCCGCTTGTTGACGAGATTGAGTTCAATGGGGAAATACCCAAGATCATAAGCTTCTTGAACCGTGAAGACCTGGAAATGAGAGTGATGGCCATGGTTTGTATTCTTGAAATTGGGTATTTTGGGCGCAAGGAGGCCATTGATGCTATGCTTGAGGAAGGGGTGATAAAGAAGCTTGTGGAATTGCAAAGATCAGAGCTTGGAGGGGATTTGACGGAAATGGGTTTGGATGAGGATGACAAGGAAAACAGAGAGGTTGCTGGTGGTGGTGGTGGGATTAAGGAGAAGAATACAAGAAGCGAGAACAGGGAAAATAGGTTCTTCGAGAACCACCCGTTTTCTAGCTGTGTGGCGAGATTTGCTGTGCAATTGGAGGTGGGTGAAGGGCTGAGGCAGAGAGAGAGGAGGGCATTTAAGCAGCAGATACTAACGAGAGTTAGAGAAGCCTCTATTTCTGATGCTGAGGCAGCCACCATTATTGCTGAGGTTTTGTGGGGGTCTTCGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

406

Amino Acids

45.44

Weight (kDa)

5.61

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014628)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02430
malus_domestica MD02G1021100.v1.1 MD15G1164200.v1.1
prunus_persica Prupe.7G250400_v2.0.a1
pyrus_communis pycom02g01870 pycom05g21450 pycom15g14730
rosa_chinensis RchiOBHm_Chr2g0087391
rosa_laevigata RLG00000015862
rosa_multiflora Rmu_sc0006064.1_g000006
rosa_roxburghii Rroxscaffold_2G00153600
rosa_rugosa Rorug01G0474800
rosa_samantha Rh2AG028300 Rh2BG028200 Rh2CG028500 Rh2DG028300
rosa_wichuraiana Rw2G002250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 49
AccII CGCG 3 cut(s) 34, 357, 468
AciI CCGC 4 cut(s) 32, 123, 355, 713
AclWI GGATC 1 cut(s) 356
AcoI YGGCCR 3 cut(s) 105, 315, 798
AfaI GTAC 1 cut(s) 688
AfiI CCNNNNNNNGG 2 cut(s) 23, 49
AgsI TTSAA 7 cut(s) 114, 463, 490, 595, 736, 769, 818
AjnI CCWGG 3 cut(s) 42, 48, 780
AloI GAACNNNNNNTCC 2 cut(s) 1010, 1042
Alw21I GWGCWC 3 cut(s) 81, 147, 385
Alw26I GTCTC 3 cut(s) 143, 227, 714
AlwI GGATC 1 cut(s) 356
AlwNI CAGNNNCTG 1 cut(s) 49
Ama87I CYCGRG 4 cut(s) 91, 140, 146, 512
AoxI GGCC 5 cut(s) 105, 253, 315, 798, 843
ApeKI GCWGC 6 cut(s) 27, 285, 288, 578, 1126, 1175
AseI ATTAAT 1 cut(s) 129
Asp700I GAANNNNTTC 1 cut(s) 434
AspLEI GCGC 1 cut(s) 837
AspS9I GGNCC 2 cut(s) 46, 442
AsuC2I CCSGG 2 cut(s) 310, 319
AsuHPI GGTGA 2 cut(s) 883, 1100
AvaI CYCGRG 4 cut(s) 91, 140, 146, 512
AvaII GGWCC 2 cut(s) 46, 442
BalI TGGCCA 1 cut(s) 800
BanII GRGCYC 3 cut(s) 81, 147, 385
BbsI GAAGAC 3 cut(s) 12, 783, 1200
Bbv12I GWGCWC 3 cut(s) 81, 147, 385
BbvCI CCTCAGC 3 cut(s) 1097, 1170, 1191
BbvI GCAGC 6 cut(s) 39, 272, 275, 590, 1138, 1187
BccI CCATC 1 cut(s) 790
BcgI CGANNNNNNTGC 2 cut(s) 661, 695
BciT130I CCWGG 3 cut(s) 44, 50, 782
BclI TGATCA 1 cut(s) 693
BcnI CCSGG 2 cut(s) 310, 319
BcoDI GTCTC 3 cut(s) 143, 227, 714
BfaI CTAG 1 cut(s) 1050
BisI GCNGC 6 cut(s) 28, 286, 289, 579, 1127, 1176
BlsI GCNGC 6 cut(s) 29, 287, 290, 580, 1128, 1177
Bme1390I CCNGG 5 cut(s) 44, 50, 310, 319, 782
Bme18I GGWCC 2 cut(s) 46, 442
BmeT110I CYCGRG 4 cut(s) 91, 140, 146, 512
BmgT120I GGNCC 2 cut(s) 46, 442
BmrFI CCNGG 5 cut(s) 44, 50, 310, 319, 782
BmsI GCATC 3 cut(s) 273, 841, 1156
BpiI GAAGAC 3 cut(s) 12, 783, 1200
BpmI CTGGAG 1 cut(s) 26
Bpu10I CCTNAGC 3 cut(s) 1097, 1170, 1191
BpuEI CTTGAG 3 cut(s) 203, 224, 881
BpuMI CCSGG 2 cut(s) 310, 319
BsaI GGTCTC 2 cut(s) 143, 227
BsaJI CCNNGG 1 cut(s) 801
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 49
BseBI CCWGG 3 cut(s) 44, 50, 782
BseDI CCNNGG 1 cut(s) 801
BseGI GGATG 5 cut(s) 165, 245, 607, 943, 949
BseLI CCNNNNNNNGG 2 cut(s) 23, 49
BseMII CTCAG 3 cut(s) 1088, 1161, 1182
BseRI GAGGAG 1 cut(s) 1126
BseX3I CGGCCG 1 cut(s) 105
BseXI GCAGC 6 cut(s) 39, 272, 275, 590, 1138, 1187
Bsh1236I CGCG 3 cut(s) 34, 357, 468
Bsh1285I CGRYCG 3 cut(s) 108, 327, 355
BshFI GGCC 5 cut(s) 107, 255, 317, 800, 845
BsiEI CGRYCG 3 cut(s) 108, 327, 355
BsiHKAI GWGCWC 3 cut(s) 81, 147, 385
BsiHKCI CYCGRG 4 cut(s) 91, 140, 146, 512
BsiSI CCGG 2 cut(s) 310, 318
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 2 cut(s) 23, 49
BsmAI GTCTC 3 cut(s) 143, 227, 714
BsmFI GGGAC 1 cut(s) 292
BsmI GAATGC 1 cut(s) 673
BsnI GGCC 5 cut(s) 107, 255, 317, 800, 845
Bso31I GGTCTC 2 cut(s) 143, 227
BsoBI CYCGRG 4 cut(s) 91, 140, 146, 512
Bsp1286I GDGCHC 3 cut(s) 81, 147, 385
Bsp143I GATC 7 cut(s) 324, 348, 636, 672, 693, 753, 899
Bsp19I CCATGG 1 cut(s) 801
Bsp68I TCGCGA 1 cut(s) 468
BspACI CCGC 4 cut(s) 32, 123, 355, 713
BspANI GGCC 5 cut(s) 107, 255, 317, 800, 845
BspCNI CTCAG 3 cut(s) 1089, 1162, 1183
BspFNI CGCG 3 cut(s) 34, 357, 468
BspPI GGATC 1 cut(s) 356
BspTNI GGTCTC 2 cut(s) 143, 227
BssECI CCNNGG 1 cut(s) 801
BssMI GATC 7 cut(s) 324, 348, 636, 672, 693, 753, 899
BssT1I CCWWGG 1 cut(s) 801
Bst2UI CCWGG 3 cut(s) 44, 50, 782
Bst4CI ACNGT 2 cut(s) 539, 773
BstC8I GCNNGC 2 cut(s) 32, 315
BstDEI CTNAG 4 cut(s) 364, 1097, 1170, 1191
BstDSI CCRYGG 1 cut(s) 801
BstF5I GGATG 5 cut(s) 165, 245, 607, 943, 949
BstFNI CGCG 3 cut(s) 34, 357, 468
BstHHI GCGC 1 cut(s) 837
BstKTI GATC 7 cut(s) 327, 351, 639, 675, 696, 756, 902
BstMAI GTCTC 3 cut(s) 143, 227, 714
BstMBI GATC 7 cut(s) 324, 348, 636, 672, 693, 753, 899
BstMCI CGRYCG 3 cut(s) 108, 327, 355
BstMWI GCNNNNNNNGC 7 cut(s) 131, 261, 369, 578, 851, 1067, 1175
BstNI CCWGG 3 cut(s) 44, 50, 782
BstSCI CCNGG 5 cut(s) 42, 48, 308, 317, 780
BstUI CGCG 3 cut(s) 34, 357, 468
BstV1I GCAGC 6 cut(s) 39, 272, 275, 590, 1138, 1187
BstV2I GAAGAC 3 cut(s) 12, 783, 1200
BstZI CGGCCG 1 cut(s) 105
BsuRI GGCC 5 cut(s) 107, 255, 317, 800, 845
BtgI CCRYGG 1 cut(s) 801
BtsCI GGATG 5 cut(s) 165, 245, 607, 943, 949
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 2 cut(s) 298, 535
BtuMI TCGCGA 1 cut(s) 468
Cac8I GCNNGC 2 cut(s) 32, 315
CaiI CAGNNNCTG 1 cut(s) 49
CfoI GCGC 1 cut(s) 837
Cfr13I GGNCC 2 cut(s) 46, 442
Csp6I GTAC 1 cut(s) 687
CspCI CAANNNNNGTGG 2 cut(s) 1168, 1203
CviAII CATG 2 cut(s) 74, 802
CviQI GTAC 1 cut(s) 687
DdeI CTNAG 4 cut(s) 364, 1097, 1170, 1191
DpnI GATC 7 cut(s) 326, 350, 638, 674, 695, 755, 901
DpnII GATC 7 cut(s) 324, 348, 636, 672, 693, 753, 899
EaeI YGGCCR 3 cut(s) 105, 315, 798
EagI CGGCCG 1 cut(s) 105
EciI GGCGGA 1 cut(s) 112
Ecl136II GAGCTC 3 cut(s) 79, 145, 383
EclXI CGGCCG 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 801
Eco24I GRGCYC 3 cut(s) 81, 147, 385
Eco31I GGTCTC 2 cut(s) 143, 227
Eco47I GGWCC 2 cut(s) 46, 442
Eco52I CGGCCG 1 cut(s) 105
Eco53kI GAGCTC 3 cut(s) 79, 145, 383
Eco88I CYCGRG 4 cut(s) 91, 140, 146, 512
EcoICRI GAGCTC 3 cut(s) 79, 145, 383
EcoO109I RGGNCCY 1 cut(s) 46
EcoRII CCWGG 3 cut(s) 42, 48, 780
EcoT14I CCWWGG 1 cut(s) 801
EcoT38I GRGCYC 3 cut(s) 81, 147, 385
ErhI CCWWGG 1 cut(s) 801
FaeI CATG 2 cut(s) 77, 805
FaiI YATR 6 cut(s) 75, 575, 685, 758, 803, 857
FalI AAGNNNNNCTT 2 cut(s) 381, 413
FaqI GGGAC 1 cut(s) 292
FatI CATG 2 cut(s) 73, 801
FauI CCCGC 1 cut(s) 39
FbaI TGATCA 1 cut(s) 693
Fnu4HI GCNGC 6 cut(s) 28, 286, 289, 579, 1127, 1176
FokI GGATG 5 cut(s) 152, 232, 614, 950, 956
FriOI GRGCYC 3 cut(s) 81, 147, 385
Fsp4HI GCNGC 6 cut(s) 28, 286, 289, 579, 1127, 1176
FspBI CTAG 1 cut(s) 1050
GlaI GCGC 1 cut(s) 836
GluI GCNGC 6 cut(s) 28, 286, 289, 579, 1127, 1176
GsuI CTGGAG 1 cut(s) 26
HaeIII GGCC 5 cut(s) 107, 255, 317, 800, 845
HapII CCGG 2 cut(s) 310, 318
HhaI GCGC 1 cut(s) 837
Hin1II CATG 2 cut(s) 77, 805
Hin6I GCGC 1 cut(s) 835
HinP1I GCGC 1 cut(s) 835
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HindIII AAGCTT 2 cut(s) 760, 881
HinfI GANTC 9 cut(s) 94, 101, 110, 155, 295, 329, 430, 515, 530
HpaII CCGG 2 cut(s) 310, 318
HphI GGTGA 2 cut(s) 883, 1100
Hpy166II GTNNAC 1 cut(s) 721
Hpy188I TCNGA 8 cut(s) 160, 334, 387, 585, 677, 698, 904, 1165
Hpy8I GTNNAC 1 cut(s) 721
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 2 cut(s) 860, 1085
HpyCH4III ACNGT 2 cut(s) 539, 773
HpyCH4V TGCA 4 cut(s) 454, 475, 895, 1075
HpyF10VI GCNNNNNNNGC 7 cut(s) 131, 261, 369, 578, 851, 1067, 1175
HpyF3I CTNAG 4 cut(s) 364, 1097, 1170, 1191
Hsp92II CATG 2 cut(s) 77, 805
HspAI GCGC 1 cut(s) 835
Ksp22I TGATCA 1 cut(s) 693
Kzo9I GATC 7 cut(s) 324, 348, 636, 672, 693, 753, 899
LmnI GCTCC 2 cut(s) 84, 429
Lsp1109I GCAGC 6 cut(s) 39, 272, 275, 590, 1138, 1187
LweI GCATC 3 cut(s) 273, 841, 1156
MaeI CTAG 1 cut(s) 1050
MalI GATC 7 cut(s) 326, 350, 638, 674, 695, 755, 901
MboI GATC 7 cut(s) 324, 348, 636, 672, 693, 753, 899
MboII GAAGA 5 cut(s) 17, 788, 1006, 1021, 1200
MfeI CAATTG 1 cut(s) 1076
MhlI GDGCHC 3 cut(s) 81, 147, 385
MlsI TGGCCA 1 cut(s) 800
MluCI AATT 3 cut(s) 819, 890, 1076
MluNI TGGCCA 1 cut(s) 800
MlyI GAGTC 6 cut(s) 95, 103, 164, 289, 338, 524
Mox20I TGGCCA 1 cut(s) 800
MroXI GAANNNNTTC 1 cut(s) 434
MscI TGGCCA 1 cut(s) 800
MseI TTAA 6 cut(s) 129, 278, 420, 987, 1122, 1216
Msp20I TGGCCA 1 cut(s) 800
MspI CCGG 2 cut(s) 310, 318
MspR9I CCNGG 5 cut(s) 44, 50, 310, 319, 782
MunI CAATTG 1 cut(s) 1076
Mva1269I GAATGC 1 cut(s) 673
MvaI CCWGG 3 cut(s) 44, 50, 782
MvnI CGCG 3 cut(s) 34, 357, 468
MwoI GCNNNNNNNGC 7 cut(s) 131, 261, 369, 578, 851, 1067, 1175
NciI CCSGG 2 cut(s) 310, 319
NcoI CCATGG 1 cut(s) 801
NdeII GATC 7 cut(s) 324, 348, 636, 672, 693, 753, 899
NlaIII CATG 2 cut(s) 77, 805
NmeAIII GCCGAG 2 cut(s) 83, 542
NruI TCGCGA 1 cut(s) 468
PaeR7I CTCGAG 3 cut(s) 140, 146, 512
PctI GAATGC 1 cut(s) 673
PdmI GAANNNNTTC 1 cut(s) 434
PfeI GAWTC 3 cut(s) 110, 430, 530
PflFI GACNNNGTC 1 cut(s) 154
PflMI CCANNNNNTGG 1 cut(s) 49
PfoI TCCNGGA 1 cut(s) 48
PkrI GCNGC 6 cut(s) 29, 287, 290, 580, 1128, 1177
Ple19I CGATCG 1 cut(s) 327
PleI GAGTC 6 cut(s) 95, 102, 163, 289, 337, 523
PpsI GAGTC 6 cut(s) 95, 102, 163, 289, 337, 523
PpuMI RGGWCCY 1 cut(s) 46
PshBI ATTAAT 1 cut(s) 129
Psp124BI GAGCTC 3 cut(s) 81, 147, 385
Psp5II RGGWCCY 1 cut(s) 46
Psp6I CCWGG 3 cut(s) 42, 48, 780
PspGI CCWGG 3 cut(s) 42, 48, 780
PspPI GGNCC 2 cut(s) 46, 442
PspPPI RGGWCCY 1 cut(s) 46
PspXI VCTCGAGB 2 cut(s) 140, 512
PstNI CAGNNNCTG 1 cut(s) 49
PsyI GACNNNGTC 1 cut(s) 154
PvuI CGATCG 1 cut(s) 327
RruI TCGCGA 1 cut(s) 468
RsaI GTAC 1 cut(s) 688
RsaNI GTAC 1 cut(s) 687
SacI GAGCTC 3 cut(s) 81, 147, 385
SaqAI TTAA 6 cut(s) 129, 278, 420, 987, 1122, 1216
SatI GCNGC 6 cut(s) 28, 286, 289, 579, 1127, 1176
Sau3AI GATC 7 cut(s) 324, 348, 636, 672, 693, 753, 899
Sau96I GGNCC 2 cut(s) 46, 442
SchI GAGTC 6 cut(s) 95, 103, 164, 289, 338, 524
ScrFI CCNGG 5 cut(s) 44, 50, 310, 319, 782
SduI GDGCHC 3 cut(s) 81, 147, 385
SfaNI GCATC 3 cut(s) 273, 841, 1156
Sfr274I CTCGAG 3 cut(s) 140, 146, 512
SinI GGWCC 2 cut(s) 46, 442
SlaI CTCGAG 3 cut(s) 140, 146, 512
SmlI CTYRAG 6 cut(s) 140, 146, 218, 239, 512, 860
SmoI CTYRAG 6 cut(s) 140, 146, 218, 239, 512, 860
Sse9I AATT 3 cut(s) 819, 890, 1076
SsiI CCGC 4 cut(s) 32, 123, 355, 713
SspMI CTAG 1 cut(s) 1050
SstI GAGCTC 3 cut(s) 81, 147, 385
StyD4I CCNGG 5 cut(s) 42, 48, 308, 317, 780
StyI CCWWGG 1 cut(s) 801
TaaI ACNGT 2 cut(s) 539, 773
TaqII GACCGA 2 cut(s) 167, 459
TasI AATT 3 cut(s) 819, 890, 1076
TfiI GAWTC 3 cut(s) 110, 430, 530
Tru1I TTAA 6 cut(s) 129, 278, 420, 987, 1122, 1216
Tru9I TTAA 6 cut(s) 129, 278, 420, 987, 1122, 1216
TscAI CASTG 2 cut(s) 305, 542
TseI GCWGC 6 cut(s) 27, 285, 288, 578, 1126, 1175
TspGWI ACGGA 1 cut(s) 938
TspRI CASTG 2 cut(s) 305, 542
Tth111I GACNNNGTC 1 cut(s) 154
Van91I CCANNNNNTGG 1 cut(s) 49
VpaK11BI GGWCC 2 cut(s) 46, 442
VspI ATTAAT 1 cut(s) 129
XhoI CTCGAG 3 cut(s) 140, 146, 512
XmnI GAANNNNTTC 1 cut(s) 434
XspI CTAG 1 cut(s) 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.