Rroxscaffold_2G00153600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014628
Physical Location & Seq
Forward (+)
90374267 .. 90375442
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00153600.1

Sequence Viewer

Length: 1176 bp
ATGGAAGACCAACCAAGGCAAGACAACCCACGAGTCCTGAAGGTCCTGGAAGCTCTAAAACAAGCCTCCCAGGAGCTCCAAACCCACCCGAGTCTCGACTCGGCCGAGTCCAACTCGTCCGCCATTAACGCCCTCCTCGAGCTCGAGACCGAGTCCGACTCGCTCCTCTCCCGAGACCCACATCTCTCCACTCTCTCCCAACACCTCGCCACCCTCAAAACCCTCGTCGCTTCCCTCCGGAAATCCAACACCCACCACAGCATAATGTCCTTTCTGACTCGCCGCGCCTCCACTCAGTCGCTGAGTCGACTCGCCGGTTCGATCGAGTCGGAAATCCAGGCCTGGATCGACCGCGAGAGCCTCGAGTCCCTAACGAGAGCTCTGAAACAAAAGGACCCAGTTGACAACGAGGACGAGTTGATAAAGCTACTGACTCAGTTCGAGGACCGAATCTCGCAAGGCTTCAACCGCGAGTTGCAAGATTTGGTGTTGAAGTCCAAAGTGTTGAACTTGCTCGAATCTGTTCTCTGCGATTCGAATACCTCAAAGCGAGTCAGGGAACACTGTGCTTTCGCCATAGCTGCTTTGATCAAGTTCAACAAGGATGTGTTTGTGGGCCAAGTACTAATGGGTGCCACCATTAAAGCTTTGTTAACAACGGCTTCAACTAACTCAATCAAAGTGTTATGTACTTTGGTCAGAACTATTAAGTCTCCGCTTGTAGATGAGATTGAGTTTAATGGTCAGATACCGAAGATTATAGGCCTGTTGAATTGGGTTGACATTGAAATGAGAGTCATGGCGTTTGTTTGTGTGCTCGAAATTGGTTACTTCGGGCGCAAGGAAGCGATTGACGCAATGTTGGAGGAAGGTTTGATAGAGAAGCTTGTGGAGTTACAGAGGTCCGAGCTTGGTGGGGATTTGATGGAACTTGAATTGTATGATGAGGAAGGCGAAACCAAGGGCGGCTGCAGAGAGAAGAGGTTGTTGGAGAGGCGGCCGTTTACGAGCTGTGTGGCGAGGTTTGCTGTGCAGTTGGAGGTGGGTGAGGGGCTGAGGCAGAGAGAGAGGAGGGCGTTCAAGCAGCAGATATTGGTGAGAGTTAGAGAAGCCTCCATTTCTGATGCAGAGGCTGCTACTATTATTGCTGAGGTTTTGTGGGGTTCTTCACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

391

Amino Acids

43.84

Weight (kDa)

5.37

Isoelectric Point (pI)

45.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014628)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02430
malus_domestica MD02G1021100.v1.1 MD15G1164200.v1.1
prunus_persica Prupe.7G250400_v2.0.a1
pyrus_communis pycom02g01870 pycom05g21450 pycom15g14730
rosa_chinensis RchiOBHm_Chr2g0087391
rosa_laevigata RLG00000015862
rosa_multiflora Rmu_sc0006064.1_g000006
rosa_roxburghii Rroxscaffold_2G00153600
rosa_rugosa Rorug01G0474800
rosa_samantha Rh2AG028300 Rh2BG028200 Rh2CG028500 Rh2DG028300
rosa_wichuraiana Rw2G002250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 632
AccI GTMKAC 1 cut(s) 307
AccII CGCG 3 cut(s) 285, 354, 471
AccIII TCCGGA 1 cut(s) 237
AciI CCGC 7 cut(s) 120, 283, 352, 469, 716, 966, 997
AclWI GGATC 1 cut(s) 353
AcoI YGGCCR 2 cut(s) 102, 998
AcuI CTGAAG 1 cut(s) 59
AfaI GTAC 2 cut(s) 624, 691
AgsI TTSAA 9 cut(s) 466, 493, 508, 598, 666, 772, 788, 935, 1081
AjnI CCWGG 4 cut(s) 45, 69, 336, 341
AjuI GAANNNNNNNTTGG 2 cut(s) 971, 1003
Alw21I GWGCWC 4 cut(s) 78, 144, 382, 819
Alw26I GTCTC 4 cut(s) 98, 140, 168, 717
AlwI GGATC 1 cut(s) 353
AlwNI CAGNNNCTG 2 cut(s) 301, 1133
Ama87I CYCGRG 5 cut(s) 88, 137, 143, 171, 362
Aor13HI TCCGGA 1 cut(s) 237
AoxI GGCC 5 cut(s) 102, 339, 616, 763, 998
ApeKI GCWGC 4 cut(s) 581, 969, 1084, 1133
ArsI GACNNNNNNTTYG 2 cut(s) 210, 242
Asp700I GAANNNNTTC 1 cut(s) 522
AspLEI GCGC 2 cut(s) 287, 840
AspS9I GGNCC 5 cut(s) 43, 394, 445, 616, 903
AsuHPI GGTGA 3 cut(s) 1058, 1108, 1161
AsuII TTCGAA 1 cut(s) 536
AvaI CYCGRG 5 cut(s) 88, 137, 143, 171, 362
AvaII GGWCC 4 cut(s) 43, 394, 445, 903
BanI GGYRCC 1 cut(s) 632
BanII GRGCYC 3 cut(s) 78, 144, 382
BauI CACGAG 1 cut(s) 30
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 4 cut(s) 78, 144, 382, 819
BbvCI CCTCAGC 2 cut(s) 1055, 1149
BbvI GCAGC 4 cut(s) 568, 956, 1096, 1120
BccI CCATC 1 cut(s) 919
BceAI ACGGC 2 cut(s) 675, 985
BciT130I CCWGG 4 cut(s) 47, 71, 338, 343
BclI TGATCA 1 cut(s) 588
BcoDI GTCTC 4 cut(s) 98, 140, 168, 717
BfmI CTRYAG 1 cut(s) 970
BisI GCNGC 7 cut(s) 283, 582, 967, 970, 998, 1085, 1134
BlsI GCNGC 7 cut(s) 284, 583, 968, 971, 999, 1086, 1135
BmcAI AGTACT 1 cut(s) 624
Bme1390I CCNGG 4 cut(s) 47, 71, 338, 343
Bme18I GGWCC 4 cut(s) 43, 394, 445, 903
BmeT110I CYCGRG 5 cut(s) 88, 137, 143, 171, 362
BmgT120I GGNCC 5 cut(s) 43, 394, 445, 616, 903
BmiI GGNNCC 2 cut(s) 396, 634
BmrFI CCNGG 4 cut(s) 47, 71, 338, 343
BmrI ACTGGG 1 cut(s) 392
BmsI GCATC 1 cut(s) 1114
BmuI ACTGGG 1 cut(s) 392
BpiI GAAGAC 1 cut(s) 12
BplI GAGNNNNNCTC 4 cut(s) 98, 130, 143, 175
Bpu10I CCTNAGC 2 cut(s) 1055, 1149
Bpu14I TTCGAA 1 cut(s) 536
BsaI GGTCTC 2 cut(s) 140, 168
BsaJI CCNNGG 3 cut(s) 14, 69, 960
BsaWI WCCGGW 1 cut(s) 237
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 1 cut(s) 398
Bse3DI GCAATG 1 cut(s) 864
BseAI TCCGGA 1 cut(s) 237
BseBI CCWGG 4 cut(s) 47, 71, 338, 343
BseDI CCNNGG 3 cut(s) 14, 69, 960
BseGI GGATG 1 cut(s) 610
BseMI GCAATG 1 cut(s) 864
BseMII CTCAG 5 cut(s) 293, 308, 449, 1046, 1140
BseNI ACTGG 1 cut(s) 398
BseRI GAGGAG 3 cut(s) 125, 155, 1084
BseX3I CGGCCG 2 cut(s) 102, 998
BseXI GCAGC 4 cut(s) 568, 956, 1096, 1120
BsgI GTGCAG 1 cut(s) 1052
Bsh1236I CGCG 3 cut(s) 285, 354, 471
Bsh1285I CGRYCG 4 cut(s) 105, 324, 352, 1001
BshFI GGCC 5 cut(s) 104, 341, 618, 765, 1000
BshNI GGYRCC 1 cut(s) 632
BsiEI CGRYCG 4 cut(s) 105, 324, 352, 1001
BsiHKAI GWGCWC 4 cut(s) 78, 144, 382, 819
BsiHKCI CYCGRG 5 cut(s) 88, 137, 143, 171, 362
BsiSI CCGG 2 cut(s) 238, 315
BslFI GGGAC 1 cut(s) 352
BsmAI GTCTC 4 cut(s) 98, 140, 168, 717
BsmFI GGGAC 1 cut(s) 352
BsnI GGCC 5 cut(s) 104, 341, 618, 765, 1000
Bso31I GGTCTC 2 cut(s) 140, 168
BsoBI CYCGRG 5 cut(s) 88, 137, 143, 171, 362
Bsp119I TTCGAA 1 cut(s) 536
Bsp1286I GDGCHC 4 cut(s) 78, 144, 382, 819
Bsp13I TCCGGA 1 cut(s) 237
Bsp143I GATC 3 cut(s) 321, 345, 588
BspACI CCGC 7 cut(s) 120, 283, 352, 469, 716, 966, 997
BspANI GGCC 5 cut(s) 104, 341, 618, 765, 1000
BspCNI CTCAG 5 cut(s) 294, 307, 448, 1047, 1141
BspEI TCCGGA 1 cut(s) 237
BspFNI CGCG 3 cut(s) 285, 354, 471
BspLI GGNNCC 2 cut(s) 396, 634
BspMAI CTGCAG 1 cut(s) 974
BspPI GGATC 1 cut(s) 353
BspT104I TTCGAA 1 cut(s) 536
BspT107I GGYRCC 1 cut(s) 632
BspTNI GGTCTC 2 cut(s) 140, 168
BsrDI GCAATG 1 cut(s) 864
BsrFI RCCGGY 1 cut(s) 314
BsrI ACTGG 1 cut(s) 398
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 3 cut(s) 14, 69, 960
BssMI GATC 3 cut(s) 321, 345, 588
BssSI CACGAG 1 cut(s) 30
BssT1I CCWWGG 2 cut(s) 14, 960
Bst2BI CACGAG 1 cut(s) 30
Bst2UI CCWGG 4 cut(s) 47, 71, 338, 343
Bst4CI ACNGT 1 cut(s) 566
Bst6I CTCTTC 1 cut(s) 974
BstAPI GCANNNNNTGC 1 cut(s) 1133
BstBI TTCGAA 1 cut(s) 536
BstDEI CTNAG 6 cut(s) 294, 302, 435, 1055, 1149, 1173
BstF5I GGATG 1 cut(s) 610
BstFNI CGCG 3 cut(s) 285, 354, 471
BstHHI GCGC 2 cut(s) 287, 840
BstKTI GATC 3 cut(s) 324, 348, 591
BstMAI GTCTC 4 cut(s) 98, 140, 168, 717
BstMBI GATC 3 cut(s) 321, 345, 588
BstMCI CGRYCG 4 cut(s) 105, 324, 352, 1001
BstMWI GCNNNNNNNGC 6 cut(s) 128, 468, 581, 854, 1025, 1133
BstNI CCWGG 4 cut(s) 47, 71, 338, 343
BstSCI CCNGG 4 cut(s) 45, 69, 336, 341
BstSFI CTRYAG 1 cut(s) 970
BstUI CGCG 3 cut(s) 285, 354, 471
BstV1I GCAGC 4 cut(s) 568, 956, 1096, 1120
BstV2I GAAGAC 1 cut(s) 12
BstZI CGGCCG 2 cut(s) 102, 998
BsuRI GGCC 5 cut(s) 104, 341, 618, 765, 1000
BtsCI GGATG 1 cut(s) 610
BtsIMutI CAGTG 1 cut(s) 562
CaiI CAGNNNCTG 2 cut(s) 301, 1133
CfoI GCGC 2 cut(s) 287, 840
Cfr10I RCCGGY 1 cut(s) 314
Cfr13I GGNCC 5 cut(s) 43, 394, 445, 616, 903
CseI GACGC 1 cut(s) 863
Csp6I GTAC 2 cut(s) 623, 690
CviAII CATG 1 cut(s) 799
CviQI GTAC 2 cut(s) 623, 690
DdeI CTNAG 6 cut(s) 294, 302, 435, 1055, 1149, 1173
DpnI GATC 3 cut(s) 323, 347, 590
DpnII GATC 3 cut(s) 321, 345, 588
EaeI YGGCCR 2 cut(s) 102, 998
EagI CGGCCG 2 cut(s) 102, 998
Eam1104I CTCTTC 1 cut(s) 974
EarI CTCTTC 1 cut(s) 974
EciI GGCGGA 1 cut(s) 109
Ecl136II GAGCTC 3 cut(s) 76, 142, 380
EclXI CGGCCG 2 cut(s) 102, 998
Eco130I CCWWGG 2 cut(s) 14, 960
Eco147I AGGCCT 2 cut(s) 341, 765
Eco24I GRGCYC 3 cut(s) 78, 144, 382
Eco31I GGTCTC 2 cut(s) 140, 168
Eco47I GGWCC 4 cut(s) 43, 394, 445, 903
Eco52I CGGCCG 2 cut(s) 102, 998
Eco53kI GAGCTC 3 cut(s) 76, 142, 380
Eco57I CTGAAG 1 cut(s) 59
Eco88I CYCGRG 5 cut(s) 88, 137, 143, 171, 362
EcoICRI GAGCTC 3 cut(s) 76, 142, 380
EcoO109I RGGNCCY 2 cut(s) 43, 394
EcoRII CCWGG 4 cut(s) 45, 69, 336, 341
EcoT14I CCWWGG 2 cut(s) 14, 960
EcoT38I GRGCYC 3 cut(s) 78, 144, 382
ErhI CCWWGG 2 cut(s) 14, 960
FaeI CATG 1 cut(s) 802
FaiI YATR 6 cut(s) 263, 578, 688, 761, 800, 942
FaqI GGGAC 1 cut(s) 352
FatI CATG 1 cut(s) 798
FbaI TGATCA 1 cut(s) 588
FblI GTMKAC 1 cut(s) 307
Fnu4HI GCNGC 7 cut(s) 283, 582, 967, 970, 998, 1085, 1134
FokI GGATG 1 cut(s) 617
FriOI GRGCYC 3 cut(s) 78, 144, 382
Fsp4HI GCNGC 7 cut(s) 283, 582, 967, 970, 998, 1085, 1134
GlaI GCGC 2 cut(s) 286, 839
GluI GCNGC 7 cut(s) 283, 582, 967, 970, 998, 1085, 1134
HaeIII GGCC 5 cut(s) 104, 341, 618, 765, 1000
HapII CCGG 2 cut(s) 238, 315
HgaI GACGC 1 cut(s) 863
HhaI GCGC 2 cut(s) 287, 840
Hin1II CATG 1 cut(s) 802
Hin6I GCGC 2 cut(s) 285, 838
HinP1I GCGC 2 cut(s) 285, 838
HincII GTYRAC 4 cut(s) 308, 403, 654, 781
HindII GTYRAC 4 cut(s) 308, 403, 654, 781
HindIII AAGCTT 2 cut(s) 645, 884
HpaI GTTAAC 1 cut(s) 654
HpaII CCGG 2 cut(s) 238, 315
HphI GGTGA 3 cut(s) 1058, 1108, 1161
Hpy166II GTNNAC 5 cut(s) 308, 403, 654, 781, 1005
Hpy188I TCNGA 8 cut(s) 157, 276, 331, 384, 701, 747, 907, 1123
Hpy188III TCNNGA 5 cut(s) 37, 95, 145, 171, 238
Hpy8I GTNNAC 5 cut(s) 308, 403, 654, 781, 1005
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 3 cut(s) 34, 863, 944
HpyCH4III ACNGT 1 cut(s) 566
HpyCH4V TGCA 4 cut(s) 478, 972, 1033, 1127
HpyF10VI GCNNNNNNNGC 6 cut(s) 128, 468, 581, 854, 1025, 1133
HpyF3I CTNAG 6 cut(s) 294, 302, 435, 1055, 1149, 1173
Hsp92II CATG 1 cut(s) 802
HspAI GCGC 2 cut(s) 285, 838
Kpn2I TCCGGA 1 cut(s) 237
Ksp22I TGATCA 1 cut(s) 588
KspAI GTTAAC 1 cut(s) 654
Kzo9I GATC 3 cut(s) 321, 345, 588
LmnI GCTCC 3 cut(s) 73, 81, 168
Lsp1109I GCAGC 4 cut(s) 568, 956, 1096, 1120
LweI GCATC 1 cut(s) 1114
MaeIII GTNAC 2 cut(s) 827, 894
MalI GATC 3 cut(s) 323, 347, 590
MboI GATC 3 cut(s) 321, 345, 588
MboII GAAGA 4 cut(s) 17, 766, 991, 1158
MhlI GDGCHC 4 cut(s) 78, 144, 382, 819
MluCI AATT 3 cut(s) 772, 822, 935
MmeI TCCRAC 7 cut(s) 135, 180, 270, 309, 843, 969, 1017
MroI TCCGGA 1 cut(s) 237
MroXI GAANNNNTTC 1 cut(s) 522
MseI TTAA 5 cut(s) 126, 642, 653, 708, 738
MslI CAYNNNNRTG 1 cut(s) 788
MspI CCGG 2 cut(s) 238, 315
MspR9I CCNGG 4 cut(s) 47, 71, 338, 343
MvaI CCWGG 4 cut(s) 47, 71, 338, 343
MvnI CGCG 3 cut(s) 285, 354, 471
MwoI GCNNNNNNNGC 6 cut(s) 128, 468, 581, 854, 1025, 1133
NdeII GATC 3 cut(s) 321, 345, 588
NlaIII CATG 1 cut(s) 802
NlaIV GGNNCC 2 cut(s) 396, 634
NmeAIII GCCGAG 2 cut(s) 80, 130
NspV TTCGAA 1 cut(s) 536
PaeR7I CTCGAG 3 cut(s) 137, 143, 362
PceI AGGCCT 2 cut(s) 341, 765
PcsI WCGNNNNNNNCGW 2 cut(s) 102, 135
PdmI GAANNNNTTC 1 cut(s) 522
PfeI GAWTC 3 cut(s) 450, 518, 533
PflFI GACNNNGTC 1 cut(s) 151
PfoI TCCNGGA 1 cut(s) 45
PkrI GCNGC 7 cut(s) 284, 583, 968, 971, 999, 1086, 1135
Ple19I CGATCG 1 cut(s) 324
PpuMI RGGWCCY 2 cut(s) 43, 394
Psp124BI GAGCTC 3 cut(s) 78, 144, 382
Psp5II RGGWCCY 2 cut(s) 43, 394
Psp6I CCWGG 4 cut(s) 45, 69, 336, 341
PspGI CCWGG 4 cut(s) 45, 69, 336, 341
PspN4I GGNNCC 2 cut(s) 396, 634
PspPI GGNCC 5 cut(s) 43, 394, 445, 616, 903
PspPPI RGGWCCY 2 cut(s) 43, 394
PspXI VCTCGAGB 2 cut(s) 137, 362
PstI CTGCAG 1 cut(s) 974
PstNI CAGNNNCTG 2 cut(s) 301, 1133
PsyI GACNNNGTC 1 cut(s) 151
PvuI CGATCG 1 cut(s) 324
RsaI GTAC 2 cut(s) 624, 691
RsaNI GTAC 2 cut(s) 623, 690
RseI CAYNNNNRTG 1 cut(s) 788
SacI GAGCTC 3 cut(s) 78, 144, 382
SalI GTCGAC 1 cut(s) 306
SaqAI TTAA 5 cut(s) 126, 642, 653, 708, 738
SatI GCNGC 7 cut(s) 283, 582, 967, 970, 998, 1085, 1134
Sau3AI GATC 3 cut(s) 321, 345, 588
Sau96I GGNCC 5 cut(s) 43, 394, 445, 616, 903
ScaI AGTACT 1 cut(s) 624
ScrFI CCNGG 4 cut(s) 47, 71, 338, 343
SduI GDGCHC 4 cut(s) 78, 144, 382, 819
SfaNI GCATC 1 cut(s) 1114
SfcI CTRYAG 1 cut(s) 970
Sfr274I CTCGAG 3 cut(s) 137, 143, 362
SfuI TTCGAA 1 cut(s) 536
SinI GGWCC 4 cut(s) 43, 394, 445, 903
SlaI CTCGAG 3 cut(s) 137, 143, 362
SmiMI CAYNNNNRTG 1 cut(s) 788
SmlI CTYRAG 3 cut(s) 137, 143, 362
SmoI CTYRAG 3 cut(s) 137, 143, 362
Sse9I AATT 3 cut(s) 772, 822, 935
SseBI AGGCCT 2 cut(s) 341, 765
SsiI CCGC 7 cut(s) 120, 283, 352, 469, 716, 966, 997
SstI GAGCTC 3 cut(s) 78, 144, 382
StuI AGGCCT 2 cut(s) 341, 765
StyD4I CCNGG 4 cut(s) 45, 69, 336, 341
StyI CCWWGG 2 cut(s) 14, 960
TaaI ACNGT 1 cut(s) 566
TaqII GACCGA 2 cut(s) 164, 462
TasI AATT 3 cut(s) 772, 822, 935
TatI WGTACW 2 cut(s) 622, 689
TauI GCSGC 3 cut(s) 285, 969, 1000
TfiI GAWTC 3 cut(s) 450, 518, 533
Tru1I TTAA 5 cut(s) 126, 642, 653, 708, 738
Tru9I TTAA 5 cut(s) 126, 642, 653, 708, 738
TscAI CASTG 1 cut(s) 569
TseI GCWGC 4 cut(s) 581, 969, 1084, 1133
TspRI CASTG 1 cut(s) 569
Tth111I GACNNNGTC 1 cut(s) 151
VpaK11BI GGWCC 4 cut(s) 43, 394, 445, 903
XhoI CTCGAG 3 cut(s) 137, 143, 362
XmiI GTMKAC 1 cut(s) 307
XmnI GAANNNNTTC 1 cut(s) 522
ZrmI AGTACT 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.