Rorug01G0474800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014628
Physical Location & Seq
Reverse (-)
56509508 .. 56510157
650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0474800.1

Sequence Viewer

Length: 465 bp
ATGAGCTTAATCAAGAAACCGGGACAGGATGGAGTTGCGGTGAATCGAGGAGATGGTCTTGATGGGGTAGTCTCTGCTGGTCGAGAAGAATGTGTTCAGCCAGCTCCCTTTGGACCCTTACCAAAGGGATATGTATGGGATCGCCTATATGTCTCTACCAGCGGTGTTGGACGTCCTCTCTGTGCAGCTCCTATGTTTTGTGTTATTTGCAGCAAGTTTCTTGAGCACATGACTAAAGACTGCCCTCATTTGCATGATGAGAGTTACAGCGATCGCCGTTGGAAGGTTTTTCGTGCCCCTCTTGTTGTTAAAACCGCCGCTGAGATTTTAGAAGAGAGGAGATTCATTGATGAAATTGATCCAGAAGATTCTCCTTTCCCCACTGATGCATTGGGAGCTGCGTGCAGACCAAAGCCTTCGATGGCTGAAAAGTTCTCAAATATTGGGGATGCTGCAACAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.85

Weight (kDa)

5.62

Isoelectric Point (pI)

58.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014628)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02430
malus_domestica MD02G1021100.v1.1 MD15G1164200.v1.1
prunus_persica Prupe.7G250400_v2.0.a1
pyrus_communis pycom02g01870 pycom05g21450 pycom15g14730
rosa_chinensis RchiOBHm_Chr2g0087391
rosa_laevigata RLG00000015862
rosa_multiflora Rmu_sc0006064.1_g000006
rosa_roxburghii Rroxscaffold_2G00153600
rosa_rugosa Rorug01G0474800
rosa_samantha Rh2AG028300 Rh2BG028200 Rh2CG028500 Rh2DG028300
rosa_wichuraiana Rw2G002250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 175
AciI CCGC 4 cut(s) 38, 162, 315, 318
AclWI GGATC 2 cut(s) 147, 353
AcyI GRCGYC 1 cut(s) 172
AfiI CCNNNNNNNGG 1 cut(s) 283
AluBI AGCT 4 cut(s) 6, 104, 188, 398
AluI AGCT 4 cut(s) 6, 104, 188, 398
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 2 cut(s) 76, 157
AlwI GGATC 2 cut(s) 147, 353
ApeKI GCWGC 4 cut(s) 185, 210, 398, 452
AsiSI GCGATCGC 1 cut(s) 274
Asp700I GAANNNNTTC 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 113
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 52
AvaII GGWCC 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 228
BbvI GCAGC 4 cut(s) 197, 222, 385, 439
BccI CCATC 4 cut(s) 23, 47, 56, 415
BceAI ACGGC 1 cut(s) 261
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 2 cut(s) 76, 157
BisI GCNGC 5 cut(s) 186, 211, 318, 399, 453
BlsI GCNGC 5 cut(s) 187, 212, 319, 400, 454
Bme1390I CCNGG 1 cut(s) 21
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 21
BmsI GCATC 2 cut(s) 376, 439
BpuEI CTTGAG 1 cut(s) 242
BpuMI CCSGG 1 cut(s) 21
BsaHI GRCGYC 1 cut(s) 172
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bsc4I CCNNNNNNNGG 1 cut(s) 283
BseGI GGATG 2 cut(s) 34, 454
BseLI CCNNNNNNNGG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 312
BseRI GAGGAG 2 cut(s) 63, 352
BseSI GKGCMC 1 cut(s) 298
BseXI GCAGC 4 cut(s) 197, 222, 385, 439
BsgI GTGCAG 2 cut(s) 204, 424
Bsh1285I CGRYCG 1 cut(s) 274
BsiEI CGRYCG 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 228
BsiSI CCGG 1 cut(s) 20
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 283
BsmAI GTCTC 2 cut(s) 76, 157
BsmFI GGGAC 1 cut(s) 36
Bsp1286I GDGCHC 2 cut(s) 228, 298
Bsp143I GATC 3 cut(s) 139, 271, 358
BspACI CCGC 4 cut(s) 38, 162, 315, 318
BspCNI CTCAG 1 cut(s) 313
BspLI GGNNCC 1 cut(s) 115
BspPI GGATC 2 cut(s) 147, 353
BssMI GATC 3 cut(s) 139, 271, 358
BssNI GRCGYC 1 cut(s) 172
Bst4CI ACNGT 1 cut(s) 460
Bst6I CTCTTC 1 cut(s) 327
BstACI GRCGYC 1 cut(s) 172
BstC8I GCNNGC 2 cut(s) 102, 403
BstDEI CTNAG 1 cut(s) 321
BstF5I GGATG 2 cut(s) 34, 454
BstKTI GATC 3 cut(s) 142, 274, 361
BstMAI GTCTC 2 cut(s) 76, 157
BstMBI GATC 3 cut(s) 139, 271, 358
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstSCI CCNGG 1 cut(s) 19
BstSLI GKGCMC 1 cut(s) 298
BstV1I GCAGC 4 cut(s) 197, 222, 385, 439
BtsCI GGATG 2 cut(s) 34, 454
BtsIMutI CAGTG 2 cut(s) 381, 465
Cac8I GCNNGC 2 cut(s) 102, 403
Cfr13I GGNCC 1 cut(s) 113
CviAII CATG 2 cut(s) 229, 254
CviJI RGCY 7 cut(s) 6, 100, 104, 188, 398, 415, 425
CviKI_1 RGCY 7 cut(s) 6, 100, 104, 188, 398, 415, 425
DdeI CTNAG 1 cut(s) 321
DpnI GATC 3 cut(s) 141, 273, 360
DpnII GATC 3 cut(s) 139, 271, 358
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
Eco47I GGWCC 1 cut(s) 113
EcoT22I ATGCAT 1 cut(s) 391
FaeI CATG 2 cut(s) 232, 257
FaiI YATR 7 cut(s) 132, 136, 148, 150, 194, 230, 255
FaqI GGGAC 1 cut(s) 36
FatI CATG 2 cut(s) 228, 253
Fnu4HI GCNGC 5 cut(s) 186, 211, 318, 399, 453
FokI GGATG 2 cut(s) 41, 461
Fsp4HI GCNGC 5 cut(s) 186, 211, 318, 399, 453
GluI GCNGC 5 cut(s) 186, 211, 318, 399, 453
HapII CCGG 1 cut(s) 20
Hin1I GRCGYC 1 cut(s) 172
Hin1II CATG 2 cut(s) 232, 257
HinfI GANTC 3 cut(s) 43, 342, 368
HpaII CCGG 1 cut(s) 20
HphI GGTGA 1 cut(s) 52
Hpy188III TCNNGA 5 cut(s) 13, 59, 83, 221, 362
HpyAV CCTTC 2 cut(s) 277, 426
HpyCH4III ACNGT 1 cut(s) 460
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 6 cut(s) 185, 210, 253, 389, 405, 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 1 cut(s) 321
HpySE526I ACGT 1 cut(s) 172
Hsp92I GRCGYC 1 cut(s) 172
Hsp92II CATG 2 cut(s) 232, 257
Kzo9I GATC 3 cut(s) 139, 271, 358
LmnI GCTCC 3 cut(s) 109, 193, 395
LpnPI CCDG 6 cut(s) 11, 33, 63, 114, 172, 375
Lsp1109I GCAGC 4 cut(s) 197, 222, 385, 439
LweI GCATC 2 cut(s) 376, 439
MaeII ACGT 1 cut(s) 172
MaeIII GTNAC 1 cut(s) 263
MalI GATC 3 cut(s) 141, 273, 360
MboI GATC 3 cut(s) 139, 271, 358
MboII GAAGA 3 cut(s) 98, 344, 377
MhlI GDGCHC 2 cut(s) 228, 298
MluCI AATT 1 cut(s) 354
MmeI TCCRAC 2 cut(s) 148, 260
MnlI CCTC 5 cut(s) 41, 186, 255, 309, 330
Mph1103I ATGCAT 1 cut(s) 391
MroXI GAANNNNTTC 1 cut(s) 93
MseI TTAA 2 cut(s) 8, 309
MslI CAYNNNNRTG 1 cut(s) 252
MspA1I CMGCKG 2 cut(s) 162, 320
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 395
NciI CCSGG 1 cut(s) 21
NdeII GATC 3 cut(s) 139, 271, 358
NlaIII CATG 2 cut(s) 232, 257
NlaIV GGNNCC 1 cut(s) 115
NsiI ATGCAT 1 cut(s) 391
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 3 cut(s) 43, 342, 368
PkrI GCNGC 5 cut(s) 187, 212, 319, 400, 454
Ple19I CGATCG 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 115
PspPI GGNCC 1 cut(s) 113
PvuI CGATCG 1 cut(s) 274
RgaI GCGATCGC 1 cut(s) 274
RseI CAYNNNNRTG 1 cut(s) 252
SaqAI TTAA 2 cut(s) 8, 309
SatI GCNGC 5 cut(s) 186, 211, 318, 399, 453
Sau3AI GATC 3 cut(s) 139, 271, 358
Sau96I GGNCC 1 cut(s) 113
ScrFI CCNGG 1 cut(s) 21
SduI GDGCHC 2 cut(s) 228, 298
SetI ASST 6 cut(s) 8, 106, 175, 190, 288, 400
SfaAI GCGATCGC 1 cut(s) 274
SfaNI GCATC 2 cut(s) 376, 439
SgfI GCGATCGC 1 cut(s) 274
SinI GGWCC 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 252
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 1 cut(s) 354
SsiI CCGC 4 cut(s) 38, 162, 315, 318
SspI AATATT 1 cut(s) 442
StyD4I CCNGG 1 cut(s) 19
TaaI ACNGT 1 cut(s) 460
TaiI ACGT 1 cut(s) 175
TaqI TCGA 3 cut(s) 46, 82, 419
TasI AATT 1 cut(s) 354
TauI GCSGC 1 cut(s) 320
TfiI GAWTC 3 cut(s) 43, 342, 368
Tru1I TTAA 2 cut(s) 8, 309
Tru9I TTAA 2 cut(s) 8, 309
TscAI CASTG 2 cut(s) 388, 465
TseI GCWGC 4 cut(s) 185, 210, 398, 452
TspDTI ATGAA 2 cut(s) 334, 366
TspRI CASTG 2 cut(s) 388, 465
VpaK11BI GGWCC 1 cut(s) 113
XcmI CCANNNNNNNNNTGG 1 cut(s) 388
XmnI GAANNNNTTC 1 cut(s) 93
ZraI GACGTC 1 cut(s) 173
Zsp2I ATGCAT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.