Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004943

Physical Location & Seq

Genomic Coordinates Forward (+)

1526026 .. 1531852

Gene Structure 5827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02680.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1980 bp

ATGCACGAACCGGAGCTCCAGGACCTCGCCGACGACGCCGATTATGCGGCGTCGCAGCAACACGGCTCGGCGAGCATGATGCGAAGCGATAGCGGCAGGCACAGCTCGTCGAGCGAGCACGAAGGCGCCGAGGTGGTTTATGTGAAGGATAATGTGACCATCCACCCCTCTATGCTCGCGTCGGAGAGGATTAGTGGACGATTAAGGCTAATTAAGCAGGGCTCTTCACTTTTTATGACGTGGATTCCGTACAAGGGGCAAAACACCAATGCTAGGGTTTCTGAGAAAGATAGGATTCTGTATACTATAAGGGGAGTGCCGTTGACAGAGGTTCGGTCCATTCGGCGCCACACTCCTGCACTTGGATGGCAGTACATTATCATCGTTTTGGCAACTGGACTTGCTTTTCCCCCTCTGTACTTCTACAATGGAGGAGTCAAGGAGTTCCTTGCTACAATAAAGCAGCATGTGTTCATTGTGAGGTCAGCTGAGGATGCTAATGTATTTCTTGTGAATGATTTTCAAAATCCTCTGCAGAAAACTCTATCATCTTTGGAGATACCGAGGGCGCTTTCTGTTGGAAGTGAGCCATCTACATCTTCCTTAGTTGGCGAGACGTCTCTAGATGAAATGCAGGAGAGAAAAAGTGAGGATGTCCAAAATGATTATACAATTTCTCAATATAATGAGAGGCAAAAGCAAAAGAATCATGATCCTGCACGAGATATCTCAATTCAAGTGCTGGAGAAGTTTTCTCTTGTGACAAAATTTGCTCGAGAAACAACTTCGCAACTCTTCCGTGATGGCCATAGTAATGGATATGGAGGTATACAAAGGAGAAGTAATAGCCTGTCTTCCATTGATTACTCCTCTCAAAAGGCATCTGATGATTCAAACAAAGTCTCTGATAAAAGTCCAGTCCCCGAGGATCCACTGGAGTTTGACAAGAATTCACTGGTATGGGGAAAACCACGACAGCCTCCTTTGGAGTTTGATGAGTGGCGCACCTTCTTGGATTCTGAAGGGCGGATCACGGATTCAGAAGCTTTAAGAAAGAGAATATTTTATGGGGGAGTTGAGCACAAACTACGGAAAGAGGTCTGGCCATTCTTGCTGGGATACCATGCATATGATTCAACATACGCAGAGAGGGAGTATCTCAAGGCAATGAAGAAAGCAGAGTTTGAGACAGTAAAGAAGCAGTGGCAGAGTATCTCCCCAGAGCAGGCAAGAAGGTTTACAAAATTCCGAGAGAGAAAAGGCCTTATTGACAAAGATGTGGTGAGGACCGACAGATCTATCTCCTTCTACGATGGGGATGATAATCCAAATGTGAATCTGTTGCATGATATATTGTTAACATACTCGTTTTACAACTTCGATCTTGGTTACTGTCAGGGTATGAGTGATCTTCTGTCCCCAATATTGTTTGTAATGGGGGATGAGTCGGAATCATTTTGGTGTTTTGTTAAACTGATGGAGCGCCTTGGGCCCAATTTTAACCGTGACCAAAATGGCATGCACTCTCAACTTTTTGCCATAACTAAGTTGGTGGAGATGTTAGATAGCCCCTTGCATAATTACTTTACACAGCGTGACTGCTTGAATTACTTCTTTTGTTTCCGCTGGGTTCTGATACAGTTTAAAAGGGAATTTGAATTCAACAAGACACTGAGATTATGGGAGGTACTGTGGACACATTATCCATCTGAGCACCTCCACCTATATGTGTGCGTTGCGATACTCAAGCGATACCGTAGTAAGATAATTGGGGAGCAGATGGACTTCGACACTCTACTGAAGTTCATCAATGAGCTGAGTGGTCAGATAAATCTTGATGCCGTTGTGAGAGATGCAGAAGCTCTGTGCATATGTGCTGGTGAGAATGGTGATGCTTGCATTCCACCTGGAACTCCGCCCTCACTACCTGTTGATGATGGTTTGTTGTACCCTCAACAAGAACTAGATGAGGTATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

DUF3548 RabGAP-TBC

Protein Analysis

660

Amino Acids

75.85

Weight (kDa)

5.62

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_RBD	PF12068	45 - 186	1.1e-18	Rab-binding domain (RBD)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52580 AT5G52580 AT5G52580
fragaria_vesca	FvH4_1g02680
malus_domestica	MD02G1027400.v1.1 MD15G1168800.v1.1
prunus_persica	Prupe.7G247700_v2.0.a1 Prupe.7G247700_v2.0.a1 Prupe.7G247700_v2.0.a1 Prupe.7G247700_v2.0.a1
pyrus_communis	pycom02g02230 pycom15g15050
rosa_chinensis	RchiOBHm_Chr2g0087771 RchiOBHm_Chr7g0194011
rosa_laevigata	RLG00000004223 RLG00000015897
rosa_multiflora	Rmu_sc0021871.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153250 Rroxscaffold_3G00261620
rosa_rugosa	Rorug01G0478700 Rorug07G0013200
rosa_samantha	Rh2AG032900 Rh2CG032700 Rh2DG032500 Rh7AG140400 Rh7BG140900 Rh7CG144400 Rh7DG141700
rosa_wichuraiana	Rw2G002560 Rw7G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	620
AccB1I	GGYRCC	2 cut(s)	125, 345
AccI	GTMKAC	2 cut(s)	302, 829
AccII	CGCG	1 cut(s)	179
AciI	CCGC	5 cut(s)	47, 93, 1027, 1624, 1916
AclWI	GGATC	4 cut(s)	707, 923, 936, 1037
AcoI	YGGCCR	2 cut(s)	805, 1103
AcsI	RAATTY	5 cut(s)	767, 949, 1244, 1652, 1658
AcuI	CTGAAG	2 cut(s)	1041, 1820
AcyI	GRCGYC	5 cut(s)	36, 50, 126, 346, 617
AdeI	CACNNNGTG	1 cut(s)	1595
AfaI	GTAC	5 cut(s)	251, 374, 419, 1689, 1949
AfiI	CCNNNNNNNGG	4 cut(s)	254, 273, 362, 1225
AgsI	TTSAA	7 cut(s)	524, 737, 894, 1137, 1606, 1658, 1663
AjiI	CACGTC	1 cut(s)	240
AjnI	CCWGG	2 cut(s)	18, 1906
AloI	GAACNNNNNNTCC	1 cut(s)	32
AluBI	AGCT	6 cut(s)	16, 105, 488, 1046, 1816, 1862
AluI	AGCT	6 cut(s)	16, 105, 488, 1046, 1816, 1862
Alw21I	GWGCWC	4 cut(s)	18, 120, 1083, 1716
Alw26I	GTCTC	4 cut(s)	608, 624, 907, 1181
AlwI	GGATC	4 cut(s)	707, 923, 936, 1037
Ama87I	CYCGRG	2 cut(s)	774, 923
AoxI	GGCC	4 cut(s)	805, 1103, 1261, 1490
ApaI	GGGCCC	1 cut(s)	1494
ApeKI	GCWGC	2 cut(s)	55, 463
ApoI	RAATTY	5 cut(s)	767, 949, 1244, 1652, 1658
Asp700I	GAANNNNTTC	1 cut(s)	1610
AspLEI	GCGC	5 cut(s)	128, 348, 571, 1005, 1485
AspS9I	GGNCC	5 cut(s)	22, 336, 1287, 1490, 1491
AsuHPI	GGTGA	3 cut(s)	1294, 1892, 1901
AvaI	CYCGRG	2 cut(s)	774, 923
AvaII	GGWCC	3 cut(s)	22, 336, 1287
BaeGI	GKGCMC	1 cut(s)	1494
BaeI	ACNNNNGTAYC	2 cut(s)	1744, 1777
BalI	TGGCCA	2 cut(s)	807, 1105
BamHI	GGATCC	1 cut(s)	928
BanI	GGYRCC	2 cut(s)	125, 345
BanII	GRGCYC	3 cut(s)	18, 224, 1494
BauI	CACGAG	1 cut(s)	720
BbsI	GAAGAC	1 cut(s)	846
Bbv12I	GWGCWC	4 cut(s)	18, 120, 1083, 1716
BbvCI	CCTCAGC	1 cut(s)	489
BbvI	GCAGC	2 cut(s)	67, 475
BccI	CCATC	9 cut(s)	167, 360, 598, 797, 1307, 1471, 1714, 1774, 1931
BceAI	ACGGC	3 cut(s)	79, 304, 1826
BcgI	CGANNNNNNTGC	2 cut(s)	61, 95
BciT130I	CCWGG	2 cut(s)	20, 1908
BciVI	GTATCC	1 cut(s)	1112
BcoDI	GTCTC	4 cut(s)	608, 624, 907, 1181
BfaI	CTAG	3 cut(s)	273, 623, 1964
BfmI	CTRYAG	1 cut(s)	533
BfoI	RGCGCY	4 cut(s)	129, 349, 572, 1486
BfuI	GTATCC	1 cut(s)	1112
BglII	AGATCT	1 cut(s)	1295
BisI	GCNGC	4 cut(s)	48, 56, 94, 464
BlsI	GCNGC	4 cut(s)	49, 57, 95, 465
Bme1390I	CCNGG	2 cut(s)	20, 1908
Bme18I	GGWCC	3 cut(s)	22, 336, 1287
BmeT110I	CYCGRG	2 cut(s)	774, 923
BmgBI	CACGTC	1 cut(s)	240
BmgT120I	GGNCC	5 cut(s)	22, 336, 1287, 1490, 1491
BmiI	GGNNCC	4 cut(s)	127, 347, 930, 1492
BmrFI	CCNGG	2 cut(s)	20, 1908
BmsI	GCATC	6 cut(s)	69, 484, 890, 1828, 1843, 1882
BpiI	GAAGAC	1 cut(s)	846
BpmI	CTGGAG	2 cut(s)	764, 956
Bpu10I	CCTNAGC	1 cut(s)	489
BpuEI	CTTGAG	2 cut(s)	1145, 1730
BsaBI	GATNNNNATC	1 cut(s)	1323
BsaHI	GRCGYC	5 cut(s)	36, 50, 126, 346, 617
BsaJI	CCNNGG	4 cut(s)	129, 563, 924, 1486
BsaWI	WCCGGW	1 cut(s)	10
BsaXI	ACNNNNNCTCC	3 cut(s)	30, 1676, 1706
Bsc4I	CCNNNNNNNGG	4 cut(s)	254, 273, 362, 1225
Bse1I	ACTGG	4 cut(s)	400, 917, 939, 960
Bse3DI	GCAATG	1 cut(s)	1173
Bse8I	GATNNNNATC	1 cut(s)	1323
BseBI	CCWGG	2 cut(s)	20, 1908
BseDI	CCNNGG	4 cut(s)	129, 563, 924, 1486
BseGI	GGATG	6 cut(s)	159, 371, 499, 658, 1324, 1447
BseJI	GATNNNNATC	1 cut(s)	1323
BseLI	CCNNNNNNNGG	4 cut(s)	254, 273, 362, 1225
BseMI	GCAATG	1 cut(s)	1173
BseMII	CTCAG	5 cut(s)	273, 480, 1664, 1701, 1808
BseNI	ACTGG	4 cut(s)	400, 917, 939, 960
BseRI	GAGGAG	2 cut(s)	447, 859
BseSI	GKGCMC	1 cut(s)	1494
BseXI	GCAGC	2 cut(s)	67, 475
BseYI	CCCAGC	2 cut(s)	1114, 1626
BsgI	GTGCAG	2 cut(s)	342, 702
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	4 cut(s)	807, 1105, 1263, 1492
BshNI	GGYRCC	2 cut(s)	125, 345
BsiHKAI	GWGCWC	4 cut(s)	18, 120, 1083, 1716
BsiHKCI	CYCGRG	2 cut(s)	774, 923
BsiSI	CCGG	1 cut(s)	11
BslFI	GGGAC	2 cut(s)	905, 1402
BslI	CCNNNNNNNGG	4 cut(s)	254, 273, 362, 1225
BsmAI	GTCTC	4 cut(s)	608, 624, 907, 1181
BsmBI	CGTCTC	2 cut(s)	608, 624
BsmFI	GGGAC	2 cut(s)	905, 1402
BsmI	GAATGC	1 cut(s)	1899
BsnI	GGCC	4 cut(s)	807, 1105, 1263, 1492
BsoBI	CYCGRG	2 cut(s)	774, 923
Bsp120I	GGGCCC	1 cut(s)	1490
Bsp1286I	GDGCHC	6 cut(s)	18, 120, 224, 1083, 1494, 1716
Bsp143I	GATC	6 cut(s)	712, 928, 1029, 1295, 1381, 1408
BspACI	CCGC	5 cut(s)	47, 93, 1027, 1624, 1916
BspANI	GGCC	4 cut(s)	807, 1105, 1263, 1492
BspCNI	CTCAG	5 cut(s)	274, 481, 1665, 1702, 1809
BspFNI	CGCG	1 cut(s)	179
BspHI	TCATGA	1 cut(s)	709
BspLI	GGNNCC	4 cut(s)	127, 347, 930, 1492
BspMAI	CTGCAG	1 cut(s)	537
BspPI	GGATC	4 cut(s)	707, 923, 936, 1037
BspQI	GCTCTTC	1 cut(s)	229
BspT107I	GGYRCC	2 cut(s)	125, 345
BsrDI	GCAATG	1 cut(s)	1173
BsrI	ACTGG	4 cut(s)	400, 917, 939, 960
BssECI	CCNNGG	4 cut(s)	129, 563, 924, 1486
BssMI	GATC	6 cut(s)	712, 928, 1029, 1295, 1381, 1408
BssNAI	GTATAC	2 cut(s)	303, 830
BssNI	GRCGYC	5 cut(s)	36, 50, 126, 346, 617
BssSI	CACGAG	1 cut(s)	720
BssT1I	CCWWGG	1 cut(s)	1486
Bst1107I	GTATAC	2 cut(s)	303, 830
Bst2BI	CACGAG	1 cut(s)	720
Bst2UI	CCWGG	2 cut(s)	20, 1908
Bst4CI	ACNGT	6 cut(s)	1192, 1394, 1505, 1641, 1692, 1757
Bst6I	CTCTTC	2 cut(s)	229, 800
BstACI	GRCGYC	5 cut(s)	36, 50, 126, 346, 617
BstC8I	GCNNGC	7 cut(s)	73, 98, 116, 177, 1227, 1520, 1897
BstDEI	CTNAG	7 cut(s)	282, 489, 604, 1545, 1673, 1710, 1817
BstF5I	GGATG	6 cut(s)	159, 371, 499, 658, 1324, 1447
BstFNI	CGCG	1 cut(s)	179
BstH2I	RGCGCY	4 cut(s)	129, 349, 572, 1486
BstHHI	GCGC	5 cut(s)	128, 348, 571, 1005, 1485
BstKTI	GATC	6 cut(s)	715, 931, 1032, 1298, 1384, 1411
BstMAI	GTCTC	4 cut(s)	608, 624, 907, 1181
BstMBI	GATC	6 cut(s)	712, 928, 1029, 1295, 1381, 1408
BstNI	CCWGG	2 cut(s)	20, 1908
BstNSI	RCATGY	2 cut(s)	470, 1522
BstSCI	CCNGG	2 cut(s)	18, 1906
BstSFI	CTRYAG	1 cut(s)	533
BstSLI	GKGCMC	1 cut(s)	1494
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	2 cut(s)	67, 475
BstV2I	GAAGAC	1 cut(s)	846
BstX2I	RGATCY	2 cut(s)	928, 1295
BstXI	CCANNNNNNTGG	1 cut(s)	815
BstYI	RGATCY	2 cut(s)	928, 1295
BstZ17I	GTATAC	2 cut(s)	303, 830
BsuI	GTATCC	1 cut(s)	1112
BsuRI	GGCC	4 cut(s)	807, 1105, 1263, 1492
BtrI	CACGTC	1 cut(s)	240
BtsCI	GGATG	6 cut(s)	159, 371, 499, 658, 1324, 1447
BtsI	GCAGTG	1 cut(s)	1208
BtsIMutI	CAGTG	4 cut(s)	932, 953, 1208, 1670
Cac8I	GCNNGC	7 cut(s)	73, 98, 116, 177, 1227, 1520, 1897
CciI	TCATGA	1 cut(s)	709
CfoI	GCGC	5 cut(s)	128, 348, 571, 1005, 1485
Cfr13I	GGNCC	5 cut(s)	22, 336, 1287, 1490, 1491
CseI	GACGC	3 cut(s)	39, 44, 168
Csp6I	GTAC	5 cut(s)	250, 373, 418, 1688, 1948
CviAII	CATG	6 cut(s)	76, 467, 710, 1124, 1346, 1519
CviQI	GTAC	5 cut(s)	250, 373, 418, 1688, 1948
DdeI	CTNAG	7 cut(s)	282, 489, 604, 1545, 1673, 1710, 1817
DinI	GGCGCC	2 cut(s)	127, 347
DpnI	GATC	6 cut(s)	714, 930, 1031, 1297, 1383, 1410
DpnII	GATC	6 cut(s)	712, 928, 1029, 1295, 1381, 1408
DraI	TTTAAA	1 cut(s)	1645
DraIII	CACNNNGTG	1 cut(s)	1595
EaeI	YGGCCR	2 cut(s)	805, 1103
Eam1104I	CTCTTC	2 cut(s)	229, 800
EarI	CTCTTC	2 cut(s)	229, 800
EciI	GGCGGA	2 cut(s)	1042, 1905
Ecl136II	GAGCTC	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	1486
Eco147I	AGGCCT	1 cut(s)	1263
Eco24I	GRGCYC	3 cut(s)	18, 224, 1494
Eco32I	GATATC	1 cut(s)	727
Eco47I	GGWCC	3 cut(s)	22, 336, 1287
Eco53kI	GAGCTC	1 cut(s)	16
Eco57I	CTGAAG	2 cut(s)	1041, 1820
Eco88I	CYCGRG	2 cut(s)	774, 923
EcoICRI	GAGCTC	1 cut(s)	16
EcoO109I	RGGNCCY	1 cut(s)	22
EcoRI	GAATTC	2 cut(s)	949, 1658
EcoRII	CCWGG	2 cut(s)	18, 1906
EcoRV	GATATC	1 cut(s)	727
EcoT14I	CCWWGG	1 cut(s)	1486
EcoT22I	ATGCAT	1 cut(s)	1129
EcoT38I	GRGCYC	3 cut(s)	18, 224, 1494
EgeI	GGCGCC	2 cut(s)	127, 347
EheI	GGCGCC	2 cut(s)	127, 347
ErhI	CCWWGG	1 cut(s)	1486
Esp3I	CGTCTC	2 cut(s)	608, 624
FaeI	CATG	6 cut(s)	79, 470, 713, 1127, 1349, 1522
FaqI	GGGAC	2 cut(s)	905, 1402
FatI	CATG	6 cut(s)	75, 466, 709, 1123, 1345, 1518
FauNDI	CATATG	2 cut(s)	1129, 1871
FblI	GTMKAC	2 cut(s)	302, 829
Fnu4HI	GCNGC	4 cut(s)	48, 56, 94, 464
FokI	GGATG	6 cut(s)	146, 378, 506, 665, 1331, 1454
FriOI	GRGCYC	3 cut(s)	18, 224, 1494
Fsp4HI	GCNGC	4 cut(s)	48, 56, 94, 464
FspBI	CTAG	3 cut(s)	273, 623, 1964
GlaI	GCGC	5 cut(s)	127, 347, 570, 1004, 1484
GluI	GCNGC	4 cut(s)	48, 56, 94, 464
GsaI	CCCAGC	2 cut(s)	1118, 1630
GsuI	CTGGAG	2 cut(s)	764, 956
HaeII	RGCGCY	4 cut(s)	129, 349, 572, 1486
HaeIII	GGCC	4 cut(s)	807, 1105, 1263, 1492
HapII	CCGG	1 cut(s)	11
HgaI	GACGC	3 cut(s)	39, 44, 168
HhaI	GCGC	5 cut(s)	128, 348, 571, 1005, 1485
Hin1I	GRCGYC	5 cut(s)	36, 50, 126, 346, 617
Hin1II	CATG	6 cut(s)	79, 470, 713, 1127, 1349, 1522
Hin6I	GCGC	5 cut(s)	126, 346, 569, 1003, 1483
HinP1I	GCGC	5 cut(s)	126, 346, 569, 1003, 1483
HincII	GTYRAC	2 cut(s)	324, 1359
HindII	GTYRAC	2 cut(s)	324, 1359
HindIII	AAGCTT	1 cut(s)	1044
HpaI	GTTAAC	1 cut(s)	1359
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	3 cut(s)	1294, 1892, 1901
Hpy166II	GTNNAC	7 cut(s)	197, 303, 324, 830, 1239, 1359, 1695
Hpy188III	TCNNGA	4 cut(s)	623, 710, 776, 1835
Hpy8I	GTNNAC	7 cut(s)	197, 303, 324, 830, 1239, 1359, 1695
Hpy99I	CGWCG	5 cut(s)	35, 38, 55, 112, 184
HpyAV	CCTTC	6 cut(s)	116, 139, 1016, 1018, 1227, 1315
HpyCH4III	ACNGT	6 cut(s)	1192, 1394, 1505, 1641, 1692, 1757
HpyCH4IV	ACGT	2 cut(s)	239, 617
HpyF3I	CTNAG	7 cut(s)	282, 489, 604, 1545, 1673, 1710, 1817
HpySE526I	ACGT	2 cut(s)	239, 617
Hsp92I	GRCGYC	5 cut(s)	36, 50, 126, 346, 617
Hsp92II	CATG	6 cut(s)	79, 470, 713, 1127, 1349, 1522
HspAI	GCGC	5 cut(s)	126, 346, 569, 1003, 1483
KasI	GGCGCC	2 cut(s)	125, 345
KspAI	GTTAAC	1 cut(s)	1359
Kzo9I	GATC	6 cut(s)	712, 928, 1029, 1295, 1381, 1408
LguI	GCTCTTC	1 cut(s)	229
LmnI	GCTCC	4 cut(s)	13, 21, 1480, 1774
Lsp1109I	GCAGC	2 cut(s)	67, 475
LweI	GCATC	6 cut(s)	69, 484, 890, 1828, 1843, 1882
MaeI	CTAG	3 cut(s)	273, 623, 1964
MaeII	ACGT	2 cut(s)	239, 617
MaeIII	GTNAC	5 cut(s)	154, 760, 1388, 1505, 1595
MalI	GATC	6 cut(s)	714, 930, 1031, 1297, 1383, 1410
MboI	GATC	6 cut(s)	712, 928, 1029, 1295, 1381, 1408
MboII	GAAGA	6 cut(s)	216, 591, 787, 846, 1183, 1403
MflI	RGATCY	2 cut(s)	928, 1295
MhlI	GDGCHC	6 cut(s)	18, 120, 224, 1083, 1494, 1716
MlsI	TGGCCA	2 cut(s)	807, 1105
MluNI	TGGCCA	2 cut(s)	807, 1105
Mly113I	GGCGCC	2 cut(s)	126, 346
MlyI	GAGTC	2 cut(s)	444, 1454
MmeI	TCCRAC	3 cut(s)	162, 559, 1428
Mox20I	TGGCCA	2 cut(s)	807, 1105
Mph1103I	ATGCAT	1 cut(s)	1129
MroXI	GAANNNNTTC	1 cut(s)	1610
MscI	TGGCCA	2 cut(s)	807, 1105
MseI	TTAA	7 cut(s)	203, 213, 1049, 1358, 1470, 1500, 1644
MslI	CAYNNNNRTG	6 cut(s)	364, 813, 958, 1128, 1459, 1725
Msp20I	TGGCCA	2 cut(s)	807, 1105
MspA1I	CMGCKG	2 cut(s)	488, 1626
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	2 cut(s)	20, 1908
Mva1269I	GAATGC	1 cut(s)	1899
MvaI	CCWGG	2 cut(s)	20, 1908
MvnI	CGCG	1 cut(s)	179
NarI	GGCGCC	2 cut(s)	126, 346
NdeI	CATATG	2 cut(s)	1129, 1871
NdeII	GATC	6 cut(s)	712, 928, 1029, 1295, 1381, 1408
NlaIII	CATG	6 cut(s)	79, 470, 713, 1127, 1349, 1522
NlaIV	GGNNCC	4 cut(s)	127, 347, 930, 1492
NmeAIII	GCCGAG	2 cut(s)	47, 154
NmuCI	GTSAC	4 cut(s)	154, 760, 1505, 1595
NsiI	ATGCAT	1 cut(s)	1129
NspI	RCATGY	2 cut(s)	470, 1522
PaeI	GCATGC	1 cut(s)	1522
PaeR7I	CTCGAG	1 cut(s)	774
PagI	TCATGA	1 cut(s)	709
PceI	AGGCCT	1 cut(s)	1263
PciSI	GCTCTTC	1 cut(s)	229
PcsI	WCGNNNNNNNCGW	2 cut(s)	126, 245
PctI	GAATGC	1 cut(s)	1899
PdmI	GAANNNNTTC	1 cut(s)	1610
PfeI	GAWTC	9 cut(s)	244, 295, 706, 890, 1016, 1037, 1133, 1336, 1451
PfoI	TCCNGGA	1 cut(s)	18
PkrI	GCNGC	4 cut(s)	49, 57, 95, 465
PleI	GAGTC	2 cut(s)	443, 1453
PluTI	GGCGCC	2 cut(s)	129, 349
PpsI	GAGTC	2 cut(s)	443, 1453
PpuMI	RGGWCCY	1 cut(s)	22
Psp124BI	GAGCTC	1 cut(s)	18
Psp5II	RGGWCCY	1 cut(s)	22
Psp6I	CCWGG	2 cut(s)	18, 1906
PspFI	CCCAGC	2 cut(s)	1114, 1626
PspGI	CCWGG	2 cut(s)	18, 1906
PspN4I	GGNNCC	4 cut(s)	127, 347, 930, 1492
PspOMI	GGGCCC	1 cut(s)	1490
PspPI	GGNCC	5 cut(s)	22, 336, 1287, 1490, 1491
PspPPI	RGGWCCY	1 cut(s)	22
PstI	CTGCAG	1 cut(s)	537
PsuI	RGATCY	2 cut(s)	928, 1295
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	5 cut(s)	251, 374, 419, 1689, 1949
RsaNI	GTAC	5 cut(s)	250, 373, 418, 1688, 1948
RseI	CAYNNNNRTG	6 cut(s)	364, 813, 958, 1128, 1459, 1725
SacI	GAGCTC	1 cut(s)	18
SapI	GCTCTTC	1 cut(s)	229
SaqAI	TTAA	7 cut(s)	203, 213, 1049, 1358, 1470, 1500, 1644
SatI	GCNGC	4 cut(s)	48, 56, 94, 464
Sau3AI	GATC	6 cut(s)	712, 928, 1029, 1295, 1381, 1408
Sau96I	GGNCC	5 cut(s)	22, 336, 1287, 1490, 1491
SchI	GAGTC	2 cut(s)	444, 1454
ScrFI	CCNGG	2 cut(s)	20, 1908
SduI	GDGCHC	6 cut(s)	18, 120, 224, 1083, 1494, 1716
SfaNI	GCATC	6 cut(s)	69, 484, 890, 1828, 1843, 1882
SfcI	CTRYAG	1 cut(s)	533
SfoI	GGCGCC	2 cut(s)	127, 347
Sfr274I	CTCGAG	1 cut(s)	774
SinI	GGWCC	3 cut(s)	22, 336, 1287
SlaI	CTCGAG	1 cut(s)	774
SmiMI	CAYNNNNRTG	6 cut(s)	364, 813, 958, 1128, 1459, 1725
SmlI	CTYRAG	3 cut(s)	774, 1160, 1745
SmoI	CTYRAG	3 cut(s)	774, 1160, 1745
SphI	GCATGC	1 cut(s)	1522
SseBI	AGGCCT	1 cut(s)	1263
SsiI	CCGC	5 cut(s)	47, 93, 1027, 1624, 1916
SspDI	GGCGCC	2 cut(s)	125, 345
SspI	AATATT	2 cut(s)	1062, 1425
SspMI	CTAG	3 cut(s)	273, 623, 1964
SstI	GAGCTC	1 cut(s)	18
StuI	AGGCCT	1 cut(s)	1263
StyD4I	CCNGG	2 cut(s)	18, 1906
StyI	CCWWGG	1 cut(s)	1486
TaaI	ACNGT	6 cut(s)	1192, 1394, 1505, 1641, 1692, 1757
TaiI	ACGT	2 cut(s)	242, 620
TaqI	TCGA	4 cut(s)	110, 775, 1380, 1788
TaqII	GACCGA	2 cut(s)	324, 1304
TatI	WGTACW	2 cut(s)	372, 417
TauI	GCSGC	2 cut(s)	50, 96
TfiI	GAWTC	9 cut(s)	244, 295, 706, 890, 1016, 1037, 1133, 1336, 1451
Tru1I	TTAA	7 cut(s)	203, 213, 1049, 1358, 1470, 1500, 1644
Tru9I	TTAA	7 cut(s)	203, 213, 1049, 1358, 1470, 1500, 1644
TscAI	CASTG	4 cut(s)	939, 960, 1208, 1677
TseFI	GTSAC	4 cut(s)	154, 760, 1505, 1595
TseI	GCWGC	2 cut(s)	55, 463
Tsp45I	GTSAC	4 cut(s)	154, 760, 1505, 1595
TspDTI	ATGAA	4 cut(s)	463, 642, 1184, 1795
TspGWI	ACGGA	4 cut(s)	237, 788, 1049, 1105
TspRI	CASTG	4 cut(s)	939, 960, 1208, 1677
VpaK11BI	GGWCC	3 cut(s)	22, 336, 1287
XapI	RAATTY	5 cut(s)	767, 949, 1244, 1652, 1658
XbaI	TCTAGA	1 cut(s)	622
XceI	RCATGY	2 cut(s)	470, 1522
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1546
XhoI	CTCGAG	1 cut(s)	774
XmiI	GTMKAC	2 cut(s)	302, 829
XmnI	GAANNNNTTC	1 cut(s)	1610
XspI	CTAG	3 cut(s)	273, 623, 1964
ZraI	GACGTC	1 cut(s)	618
Zsp2I	ATGCAT	1 cut(s)	1129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.