Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004943

Physical Location & Seq

Genomic Coordinates Forward (+)

12149314 .. 12150192

Gene Structure 879 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG141700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGATTCAGAAGCTTTAAGAAAGAGAGTATTTTATGGGGGAGTTGAGCACAAATTACGGAAAGAGGTCTGGCCATTCTTGCTGGGACACTATGCATATGATTCAACATATACAGAGAGGGAGTATGTTAAGGCAATGAAGAGGGCAGAGTTTGAGACACTAAAGAAGCAATGGCAGAGTATCTCGGCTATCTCCCCAGAGCAGCACATTATTGACAAAGATGTGGTGAGGACCGACAGATGTCTCTCCTTCTACAATGGGGATGATAATCCAAATGTGGATCTGTTGCATGACATATTGTTAACATACTCGTTTTACAACTTGGATCTTGGTTACTGTCAGGGTATGAATGATCTTCTGTCCCCAATATTGTTTGTACTGGGGGATGAGTCGGAATCATTTTGGTGTTTTGTTAGACTGATGGAGCGCCTTGGCCCCAATTTTGACCGTGACCAAAAAGGCATGGACCCTCAACTTCTTGCTTTAAGGAATTTGGTGGAGTTGTTAGACAGACCATTGCATAATTACTTTACACTGCAGCGTAACTGCTTGGAATACCACTTTTGTTTCCGCTGGGTTCTGTTACAGTTCAAAAGGGAATTTGAATTCGACAAGACATTGAGATTATGGGAGGCTCTGTGGACACATTATCCATCTGAGCACCTGCACTTGTATGTGTGTGTTGCGATACTCAAGCGATACCGTAGTAAGATCATTGGGGAGCAGATGGATAAAGACACTCTAATCAAATTCATCAGTGAACTGAGTGGTCAAATAAATCTTGATGGCCTTGTGAGGGATGCAGAAGCTCTGTTCATATGTGCTGGTGAGAAAGGTGATGCTTGCATTCCACCTGGAACAACCGTCACTGCCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

DUF3548 RabGAP-TBC

Protein Analysis

292

Amino Acids

34.34

Weight (kDa)

5.64

Isoelectric Point (pI)

49.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	17 - 239	2.7e-47	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	96 - 253	2.5e-12	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52580 AT5G52580 AT5G52580
fragaria_vesca	FvH4_1g02680
malus_domestica	MD02G1027400.v1.1 MD15G1168800.v1.1
prunus_persica	Prupe.7G247700_v2.0.a1 Prupe.7G247700_v2.0.a1 Prupe.7G247700_v2.0.a1 Prupe.7G247700_v2.0.a1
pyrus_communis	pycom02g02230 pycom15g15050
rosa_chinensis	RchiOBHm_Chr2g0087771 RchiOBHm_Chr7g0194011
rosa_laevigata	RLG00000004223 RLG00000015897
rosa_multiflora	Rmu_sc0021871.1_g000005
rosa_roxburghii	Rroxscaffold_2G00153250 Rroxscaffold_3G00261620
rosa_rugosa	Rorug01G0478700 Rorug07G0013200
rosa_samantha	Rh2AG032900 Rh2CG032700 Rh2DG032500 Rh7AG140400 Rh7BG140900 Rh7CG144400 Rh7DG141700
rosa_wichuraiana	Rw2G002560 Rw7G011980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	672
Acc36I	ACCTGC	1 cut(s)	672
AciI	CCGC	1 cut(s)	571
AclWI	GGATC	2 cut(s)	288, 333
AcoI	YGGCCR	1 cut(s)	71
AcsI	RAATTY	4 cut(s)	490, 599, 605, 749
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	1 cut(s)	796
AgsI	TTSAA	3 cut(s)	105, 592, 605
AjnI	CCWGG	1 cut(s)	853
AluBI	AGCT	2 cut(s)	14, 809
AluI	AGCT	2 cut(s)	14, 809
Alw21I	GWGCWC	2 cut(s)	51, 663
Alw26I	GTCTC	2 cut(s)	149, 248
AlwI	GGATC	2 cut(s)	288, 333
AoxI	GGCC	3 cut(s)	71, 433, 787
ApeKI	GCWGC	2 cut(s)	202, 538
ApoI	RAATTY	4 cut(s)	490, 599, 605, 749
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	3 cut(s)	231, 434, 466
AsuHPI	GGTGA	3 cut(s)	238, 839, 848
AvaII	GGWCC	2 cut(s)	231, 466
BaeI	ACNNNNGTAYC	2 cut(s)	691, 724
BalI	TGGCCA	1 cut(s)	73
Bbv12I	GWGCWC	2 cut(s)	51, 663
BbvI	GCAGC	2 cut(s)	214, 550
BccI	CCATC	4 cut(s)	415, 661, 721, 779
BciT130I	CCWGG	1 cut(s)	855
BcoDI	GTCTC	2 cut(s)	149, 248
BfmI	CTRYAG	1 cut(s)	536
BfoI	RGCGCY	1 cut(s)	430
BfuAI	ACCTGC	1 cut(s)	672
BisI	GCNGC	2 cut(s)	203, 539
BlsI	GCNGC	2 cut(s)	204, 540
Bme1390I	CCNGG	1 cut(s)	855
Bme18I	GGWCC	2 cut(s)	231, 466
BmgT120I	GGNCC	3 cut(s)	231, 434, 466
BmiI	GGNNCC	2 cut(s)	436, 468
BmrFI	CCNGG	1 cut(s)	855
BmrI	ACTGGG	1 cut(s)	389
BmsI	GCATC	2 cut(s)	790, 829
BmuI	ACTGGG	1 cut(s)	389
BoxI	GACNNNNGTC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	677
BsaBI	GATNNNNATC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	430
BsaXI	ACNNNNNCTCC	2 cut(s)	623, 653
Bsc4I	CCNNNNNNNGG	1 cut(s)	796
Bse1I	ACTGG	1 cut(s)	384
Bse3DI	GCAATG	3 cut(s)	141, 176, 515
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	855
BseDI	CCNNGG	1 cut(s)	430
BseGI	GGATG	3 cut(s)	268, 391, 805
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	796
BseMI	GCAATG	3 cut(s)	141, 176, 515
BseMII	CTCAG	2 cut(s)	648, 755
BseNI	ACTGG	1 cut(s)	384
BseXI	GCAGC	2 cut(s)	214, 550
BseYI	CCCAGC	2 cut(s)	82, 573
BsgI	GTGCAG	1 cut(s)	650
BshFI	GGCC	3 cut(s)	73, 435, 789
BsiHKAI	GWGCWC	2 cut(s)	51, 663
BslFI	GGGAC	2 cut(s)	99, 346
BslI	CCNNNNNNNGG	1 cut(s)	796
BsmAI	GTCTC	2 cut(s)	149, 248
BsmFI	GGGAC	2 cut(s)	99, 346
BsmI	GAATGC	1 cut(s)	846
BsnI	GGCC	3 cut(s)	73, 435, 789
Bsp1286I	GDGCHC	2 cut(s)	51, 663
Bsp143I	GATC	4 cut(s)	280, 325, 352, 711
BspACI	CCGC	1 cut(s)	571
BspANI	GGCC	3 cut(s)	73, 435, 789
BspCNI	CTCAG	2 cut(s)	649, 756
BspLI	GGNNCC	2 cut(s)	436, 468
BspMAI	CTGCAG	1 cut(s)	540
BspMI	ACCTGC	1 cut(s)	672
BspPI	GGATC	2 cut(s)	288, 333
BsrDI	GCAATG	3 cut(s)	141, 176, 515
BsrI	ACTGG	1 cut(s)	384
BssECI	CCNNGG	1 cut(s)	430
BssMI	GATC	4 cut(s)	280, 325, 352, 711
BssT1I	CCWWGG	1 cut(s)	430
Bst2UI	CCWGG	1 cut(s)	855
Bst4CI	ACNGT	5 cut(s)	338, 449, 588, 704, 865
Bst6I	CTCTTC	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	844
BstDEI	CTNAG	2 cut(s)	657, 764
BstF5I	GGATG	3 cut(s)	268, 391, 805
BstH2I	RGCGCY	1 cut(s)	430
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	4 cut(s)	283, 328, 355, 714
BstMAI	GTCTC	2 cut(s)	149, 248
BstMBI	GATC	4 cut(s)	280, 325, 352, 711
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstNI	CCWGG	1 cut(s)	855
BstPAI	GACNNNNGTC	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	853
BstSFI	CTRYAG	1 cut(s)	536
BstV1I	GCAGC	2 cut(s)	214, 550
BstX2I	RGATCY	2 cut(s)	280, 325
BstYI	RGATCY	2 cut(s)	280, 325
BsuRI	GGCC	3 cut(s)	73, 435, 789
BtsCI	GGATG	3 cut(s)	268, 391, 805
BtsI	GCAGTG	2 cut(s)	533, 867
BtsIMutI	CAGTG	3 cut(s)	533, 763, 867
BveI	ACCTGC	1 cut(s)	672
Cac8I	GCNNGC	1 cut(s)	844
CfoI	GCGC	1 cut(s)	429
Cfr13I	GGNCC	3 cut(s)	231, 434, 466
Csp6I	GTAC	1 cut(s)	377
CviAII	CATG	2 cut(s)	290, 463
CviJI	RGCY	7 cut(s)	14, 73, 188, 435, 635, 789, 809
CviKI_1	RGCY	7 cut(s)	14, 73, 188, 435, 635, 789, 809
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	2 cut(s)	657, 764
DpnI	GATC	4 cut(s)	282, 327, 354, 713
DpnII	GATC	4 cut(s)	280, 325, 352, 711
EaeI	YGGCCR	1 cut(s)	71
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	430
Eco47I	GGWCC	2 cut(s)	231, 466
EcoRI	GAATTC	1 cut(s)	605
EcoRII	CCWGG	1 cut(s)	853
EcoT14I	CCWWGG	1 cut(s)	430
EcoT22I	ATGCAT	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	2 cut(s)	293, 466
FaqI	GGGAC	2 cut(s)	99, 346
FatI	CATG	2 cut(s)	289, 462
FauNDI	CATATG	2 cut(s)	97, 818
Fnu4HI	GCNGC	2 cut(s)	203, 539
FokI	GGATG	3 cut(s)	275, 398, 812
Fsp4HI	GCNGC	2 cut(s)	203, 539
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	2 cut(s)	203, 539
GsaI	CCCAGC	2 cut(s)	86, 577
HaeII	RGCGCY	1 cut(s)	430
HaeIII	GGCC	3 cut(s)	73, 435, 789
HhaI	GCGC	1 cut(s)	429
Hin1II	CATG	2 cut(s)	293, 466
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	4 cut(s)	5, 101, 389, 395
HpaI	GTTAAC	1 cut(s)	303
HphI	GGTGA	3 cut(s)	238, 839, 848
Hpy166II	GTNNAC	3 cut(s)	303, 642, 761
Hpy188I	TCNGA	3 cut(s)	10, 394, 658
Hpy188III	TCNNGA	1 cut(s)	782
Hpy8I	GTNNAC	3 cut(s)	303, 642, 761
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	5 cut(s)	338, 449, 588, 704, 865
HpyCH4V	TGCA	7 cut(s)	95, 289, 520, 538, 667, 803, 846
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpyF3I	CTNAG	2 cut(s)	657, 764
Hsp92II	CATG	2 cut(s)	293, 466
HspAI	GCGC	1 cut(s)	427
KspAI	GTTAAC	1 cut(s)	303
Kzo9I	GATC	4 cut(s)	280, 325, 352, 711
LmnI	GCTCC	2 cut(s)	424, 721
Lsp1109I	GCAGC	2 cut(s)	214, 550
LweI	GCATC	2 cut(s)	790, 829
MaeIII	GTNAC	5 cut(s)	332, 449, 542, 582, 865
MalI	GATC	4 cut(s)	282, 327, 354, 713
MboI	GATC	4 cut(s)	280, 325, 352, 711
MboII	GAAGA	2 cut(s)	151, 347
MflI	RGATCY	2 cut(s)	280, 325
MhlI	GDGCHC	2 cut(s)	51, 663
MlsI	TGGCCA	1 cut(s)	73
MluCI	AATT	7 cut(s)	53, 439, 490, 523, 599, 605, 749
MluNI	TGGCCA	1 cut(s)	73
MlyI	GAGTC	1 cut(s)	398
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	7 cut(s)	58, 111, 135, 222, 480, 625, 789
Mox20I	TGGCCA	1 cut(s)	73
Mph1103I	ATGCAT	1 cut(s)	97
MscI	TGGCCA	1 cut(s)	73
MseI	TTAA	4 cut(s)	17, 129, 302, 485
MslI	CAYNNNNRTG	2 cut(s)	403, 672
Msp20I	TGGCCA	1 cut(s)	73
MspA1I	CMGCKG	1 cut(s)	573
MspR9I	CCNGG	1 cut(s)	855
Mva1269I	GAATGC	1 cut(s)	846
MvaI	CCWGG	1 cut(s)	855
MwoI	GCNNNNNNNGC	1 cut(s)	79
NdeI	CATATG	2 cut(s)	97, 818
NdeII	GATC	4 cut(s)	280, 325, 352, 711
NlaIII	CATG	2 cut(s)	293, 466
NlaIV	GGNNCC	2 cut(s)	436, 468
NmeAIII	GCCGAG	1 cut(s)	164
NmuCI	GTSAC	2 cut(s)	449, 865
NsiI	ATGCAT	1 cut(s)	97
PaqCI	CACCTGC	1 cut(s)	672
PctI	GAATGC	1 cut(s)	846
PfeI	GAWTC	3 cut(s)	5, 101, 395
PkrI	GCNGC	2 cut(s)	204, 540
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
PshAI	GACNNNNGTC	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	853
PspFI	CCCAGC	2 cut(s)	82, 573
PspGI	CCWGG	1 cut(s)	853
PspN4I	GGNNCC	2 cut(s)	436, 468
PspPI	GGNCC	3 cut(s)	231, 434, 466
PstI	CTGCAG	1 cut(s)	540
PsuI	RGATCY	2 cut(s)	280, 325
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
RseI	CAYNNNNRTG	2 cut(s)	403, 672
SaqAI	TTAA	4 cut(s)	17, 129, 302, 485
SatI	GCNGC	2 cut(s)	203, 539
Sau3AI	GATC	4 cut(s)	280, 325, 352, 711
Sau96I	GGNCC	3 cut(s)	231, 434, 466
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	1 cut(s)	855
SduI	GDGCHC	2 cut(s)	51, 663
SetI	ASST	6 cut(s)	16, 69, 666, 811, 838, 856
SfaNI	GCATC	2 cut(s)	790, 829
SfcI	CTRYAG	1 cut(s)	536
SinI	GGWCC	2 cut(s)	231, 466
SmiMI	CAYNNNNRTG	2 cut(s)	403, 672
SmlI	CTYRAG	1 cut(s)	692
SmoI	CTYRAG	1 cut(s)	692
Sse9I	AATT	7 cut(s)	53, 439, 490, 523, 599, 605, 749
SsiI	CCGC	1 cut(s)	571
SspI	AATATT	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	853
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	5 cut(s)	338, 449, 588, 704, 865
TaqI	TCGA	1 cut(s)	609
TaqII	GACCGA	1 cut(s)	248
TasI	AATT	7 cut(s)	53, 439, 490, 523, 599, 605, 749
TatI	WGTACW	1 cut(s)	376
TfiI	GAWTC	3 cut(s)	5, 101, 395
Tru1I	TTAA	4 cut(s)	17, 129, 302, 485
Tru9I	TTAA	4 cut(s)	17, 129, 302, 485
TscAI	CASTG	3 cut(s)	540, 763, 874
TseFI	GTSAC	2 cut(s)	449, 865
TseI	GCWGC	2 cut(s)	202, 538
Tsp45I	GTSAC	2 cut(s)	449, 865
TspDTI	ATGAA	4 cut(s)	152, 362, 742, 805
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	3 cut(s)	540, 763, 874
VpaK11BI	GGWCC	2 cut(s)	231, 466
XapI	RAATTY	4 cut(s)	490, 599, 605, 749
Zsp2I	ATGCAT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.