Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006379

Physical Location & Seq

Genomic Coordinates Reverse (-)

1592422 .. 1594036

Gene Structure 1615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGACGCAAAGCAAGATAGGAAGATATTCGTGGGTGGGATAACGAGGGAGGTTGATGAAGATATCTTGGAGGAACACTTTAGCAGATATGGGATTGTAGAAGAGTGTGTGATCGTCCTGGATAAGATCACTCGTCAACCTAGAGAGTTTGGTTTTGTTACCTTCGTTGAAGCGTCTGTGGCTAAGAGTGTGTTAGAAGAAAGTCACTCAATCTGTGGTGAAAAGATCGATGTAAGACCGTCGGAACCAAAACGCCAGAGAAAACAATTTAATCAAGAAGGGCAACATGTTCAACAAATCAATCAAAAAGAGCACCATGATCAACATCAAGGTTACATCCCTAGAAAGATTTTTGTAGGGGGTTTACCTCGTGATCTAACCGAAGATGAATTCAAAGACTATTTTGCTGAGTTTGGTGCAATTGAGGATGGAGTCATAATACATTTCAAGGACAGCAACACACCGAAAGGTTTCGGATTCATTACTTTTAAATCAGATGATTCTGTTGTGGATGTCTTGCATAAACAGGAGAACAAGTTTCATGAACTGAAAGATAAGCAGGTGGAGGTAATGAGGGCTCGTCCCGAAGTTAAAAGGAACAGGCATGGATTGTGGAGATGGCTTCCTCGCGACGATCTTGCTTTCGGGCTTGATCAGTTTATTTGCTATAATTGTGGAGGTGCTTATGGTTATGGACACCATCAAGGGTGCATGTATTGGCCAAATCCTTTTATTGGAGTGTGGAATATCATTAGGGTTATTCCCACCAATTGGATTGGTGGTGAATTAGTTGATCAAAGTGCTTGGGATGGTTATGATTCTCAACTTACTCATGTAACTCATTCAAGAGTTGCTGAACTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

289

Amino Acids

33.39

Weight (kDa)

5.78

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 67	1.2e-12	RNA recognition motif
RRM_7	PF16367	115 - 180	1.8e-09	RNA recognition motif
RRM_1	PF00076	117 - 174	2.2e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006379)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02790 FvH4_1g18000
malus_domestica	MD02G1189700.v1.1
prunus_persica	Prupe.6G216700_v2.0.a1
pyrus_communis	pycom02g15380
rosa_chinensis	RchiOBHm_Chr2g0087881 RchiOBHm_Chr2g0108481
rosa_laevigata	RLG00000015909 RLG00000017672
rosa_multiflora	Rmu_co8200454.1_g000001 Rmu_sc0002372.1_g000049 Rmu_sc0008385.1_g000021 Rmu_sc0014136.1_g000014
rosa_roxburghii	Rroxscaffold_2G00135100
rosa_rugosa	Rorug01G0479100 Rorug02G0153700 Rorug02G0155900
rosa_samantha	Rh2AG033900 Rh2AG202400 Rh2BG033100 Rh2BG215400 Rh2CG033800 Rh2CG206600 Rh2DG033500 Rh2DG209700
rosa_wichuraiana	Rw2G002660 Rw2G016180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	550
Acc36I	ACCTGC	1 cut(s)	550
AccB7I	CCANNNNNTGG	1 cut(s)	771
AccII	CGCG	1 cut(s)	630
AcoI	YGGCCR	1 cut(s)	719
AcsI	RAATTY	1 cut(s)	389
AfiI	CCNNNNNNNGG	2 cut(s)	734, 771
AflIII	ACRYGT	1 cut(s)	286
AgsI	TTSAA	5 cut(s)	170, 293, 394, 448, 846
AjnI	CCWGG	1 cut(s)	117
Alw21I	GWGCWC	1 cut(s)	315
AoxI	GGCC	1 cut(s)	719
ApoI	RAATTY	1 cut(s)	389
Asp700I	GAANNNNTTC	2 cut(s)	26, 470
AsuHPI	GGTGA	2 cut(s)	230, 794
BalI	TGGCCA	1 cut(s)	721
BanII	GRGCYC	1 cut(s)	580
BauI	CACGAG	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	315
BccI	CCATC	4 cut(s)	422, 612, 708, 803
BcgI	CGANNNNNNTGC	2 cut(s)	620, 654
BciT130I	CCWGG	1 cut(s)	119
BclI	TGATCA	3 cut(s)	319, 652, 793
BfaI	CTAG	2 cut(s)	141, 342
BfuAI	ACCTGC	1 cut(s)	550
Bme1390I	CCNGG	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	1 cut(s)	119
Bsa29I	ATCGAT	1 cut(s)	228
BsaBI	GATNNNNATC	1 cut(s)	324
BsaXI	ACNNNNNCTCC	2 cut(s)	521, 551
Bsc4I	CCNNNNNNNGG	2 cut(s)	734, 771
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	119
BseCI	ATCGAT	1 cut(s)	228
BseGI	GGATG	4 cut(s)	336, 433, 517, 814
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	2 cut(s)	734, 771
BseMII	CTCAG	1 cut(s)	399
Bsh1236I	CGCG	1 cut(s)	630
BshFI	GGCC	1 cut(s)	721
BshVI	ATCGAT	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	315
BslFI	GGGAC	1 cut(s)	567
BslI	CCNNNNNNNGG	2 cut(s)	734, 771
BsmFI	GGGAC	1 cut(s)	567
BsnI	GGCC	1 cut(s)	721
Bsp1286I	GDGCHC	2 cut(s)	315, 580
Bsp143I	GATC	8 cut(s)	111, 126, 225, 319, 373, 634, 652, 793
Bsp68I	TCGCGA	1 cut(s)	630
BspANI	GGCC	1 cut(s)	721
BspCNI	CTCAG	1 cut(s)	400
BspDI	ATCGAT	1 cut(s)	228
BspFNI	CGCG	1 cut(s)	630
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	1 cut(s)	246
BspMI	ACCTGC	1 cut(s)	550
BssMI	GATC	8 cut(s)	111, 126, 225, 319, 373, 634, 652, 793
BssSI	CACGAG	1 cut(s)	369
Bst2BI	CACGAG	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	240
Bst6I	CTCTTC	1 cut(s)	96
BstDEI	CTNAG	2 cut(s)	183, 408
BstF5I	GGATG	4 cut(s)	336, 433, 517, 814
BstFNI	CGCG	1 cut(s)	630
BstKTI	GATC	8 cut(s)	114, 129, 228, 322, 376, 637, 655, 796
BstMBI	GATC	8 cut(s)	111, 126, 225, 319, 373, 634, 652, 793
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 860
BstNI	CCWGG	1 cut(s)	119
BstNSI	RCATGY	2 cut(s)	290, 715
BstSCI	CCNGG	1 cut(s)	117
BstUI	CGCG	1 cut(s)	630
Bsu15I	ATCGAT	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	721
BsuTUI	ATCGAT	1 cut(s)	228
BtsCI	GGATG	4 cut(s)	336, 433, 517, 814
BtuMI	TCGCGA	1 cut(s)	630
BveI	ACCTGC	1 cut(s)	550
CciI	TCATGA	1 cut(s)	541
ClaI	ATCGAT	1 cut(s)	228
CseI	GACGC	2 cut(s)	14, 162
CviAII	CATG	6 cut(s)	287, 317, 542, 605, 712, 833
CviJI	RGCY	5 cut(s)	182, 578, 622, 649, 721
CviKI_1	RGCY	5 cut(s)	182, 578, 622, 649, 721
DdeI	CTNAG	2 cut(s)	183, 408
DpnI	GATC	8 cut(s)	113, 128, 227, 321, 375, 636, 654, 795
DpnII	GATC	8 cut(s)	111, 126, 225, 319, 373, 634, 652, 793
DraI	TTTAAA	1 cut(s)	490
EaeI	YGGCCR	1 cut(s)	719
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	580
Eco32I	GATATC	1 cut(s)	64
EcoRI	GAATTC	1 cut(s)	389
EcoRII	CCWGG	1 cut(s)	117
EcoRV	GATATC	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	580
FaeI	CATG	6 cut(s)	290, 320, 545, 608, 715, 836
FaqI	GGGAC	1 cut(s)	567
FatI	CATG	6 cut(s)	286, 316, 541, 604, 711, 832
FbaI	TGATCA	3 cut(s)	319, 652, 793
FokI	GGATG	4 cut(s)	323, 440, 524, 821
FriOI	GRGCYC	1 cut(s)	580
FspBI	CTAG	2 cut(s)	141, 342
HaeIII	GGCC	1 cut(s)	721
HgaI	GACGC	2 cut(s)	14, 162
Hin1II	CATG	6 cut(s)	290, 320, 545, 608, 715, 836
HincII	GTYRAC	1 cut(s)	137
HindII	GTYRAC	1 cut(s)	137
HinfI	GANTC	4 cut(s)	432, 477, 500, 818
HphI	GGTGA	2 cut(s)	230, 794
Hpy166II	GTNNAC	2 cut(s)	137, 365
Hpy188I	TCNGA	3 cut(s)	244, 476, 496
Hpy188III	TCNNGA	6 cut(s)	275, 371, 542, 584, 629, 846
Hpy8I	GTNNAC	2 cut(s)	137, 365
Hpy99I	CGWCG	2 cut(s)	244, 635
HpyAV	CCTTC	2 cut(s)	172, 272
HpyCH4III	ACNGT	1 cut(s)	240
HpyCH4V	TGCA	4 cut(s)	419, 520, 711, 863
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 860
HpyF3I	CTNAG	2 cut(s)	183, 408
Hsp92II	CATG	6 cut(s)	290, 320, 545, 608, 715, 836
Ksp22I	TGATCA	3 cut(s)	319, 652, 793
Kzo9I	GATC	8 cut(s)	111, 126, 225, 319, 373, 634, 652, 793
LpnPI	CCDG	6 cut(s)	104, 131, 269, 512, 545, 586
MaeI	CTAG	2 cut(s)	141, 342
MaeIII	GTNAC	4 cut(s)	157, 203, 332, 835
MalI	GATC	8 cut(s)	113, 128, 227, 321, 375, 636, 654, 795
MboI	GATC	8 cut(s)	111, 126, 225, 319, 373, 634, 652, 793
MboII	GAAGA	5 cut(s)	34, 71, 113, 209, 395
MfeI	CAATTG	2 cut(s)	420, 769
MhlI	GDGCHC	2 cut(s)	315, 580
MlsI	TGGCCA	1 cut(s)	721
MluCI	AATT	6 cut(s)	266, 389, 420, 670, 769, 785
MluNI	TGGCCA	1 cut(s)	721
MlyI	GAGTC	1 cut(s)	441
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	9 cut(s)	39, 43, 64, 378, 418, 559, 567, 636, 671
Mox20I	TGGCCA	1 cut(s)	721
MroXI	GAANNNNTTC	2 cut(s)	26, 470
MscI	TGGCCA	1 cut(s)	721
MseI	TTAA	3 cut(s)	270, 489, 591
Msp20I	TGGCCA	1 cut(s)	721
MspR9I	CCNGG	1 cut(s)	119
MunI	CAATTG	2 cut(s)	420, 769
MvaI	CCWGG	1 cut(s)	119
MvnI	CGCG	1 cut(s)	630
MwoI	GCNNNNNNNGC	2 cut(s)	179, 860
NdeII	GATC	8 cut(s)	111, 126, 225, 319, 373, 634, 652, 793
NlaIII	CATG	6 cut(s)	290, 320, 545, 608, 715, 836
NlaIV	GGNNCC	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	203
NruI	TCGCGA	1 cut(s)	630
NspI	RCATGY	2 cut(s)	290, 715
PagI	TCATGA	1 cut(s)	541
PaqCI	CACCTGC	1 cut(s)	550
PciI	ACATGT	1 cut(s)	286
PdmI	GAANNNNTTC	2 cut(s)	26, 470
PfeI	GAWTC	3 cut(s)	477, 500, 818
PflMI	CCANNNNNTGG	1 cut(s)	771
PfoI	TCCNGGA	1 cut(s)	117
PleI	GAGTC	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	440
PscI	ACATGT	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	246
RruI	TCGCGA	1 cut(s)	630
SaqAI	TTAA	3 cut(s)	270, 489, 591
Sau3AI	GATC	8 cut(s)	111, 126, 225, 319, 373, 634, 652, 793
SchI	GAGTC	1 cut(s)	441
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	2 cut(s)	315, 580
SetI	ASST	9 cut(s)	54, 142, 164, 334, 370, 472, 564, 570, 682
Sse9I	AATT	6 cut(s)	266, 389, 420, 670, 769, 785
SspMI	CTAG	2 cut(s)	141, 342
StyD4I	CCNGG	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	228
TasI	AATT	6 cut(s)	266, 389, 420, 670, 769, 785
TfiI	GAWTC	3 cut(s)	477, 500, 818
Tru1I	TTAA	3 cut(s)	270, 489, 591
Tru9I	TTAA	3 cut(s)	270, 489, 591
TseFI	GTSAC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	5 cut(s)	72, 402, 469, 530, 558
Van91I	CCANNNNNTGG	1 cut(s)	771
XapI	RAATTY	1 cut(s)	389
XceI	RCATGY	2 cut(s)	290, 715
XmnI	GAANNNNTTC	2 cut(s)	26, 470
XspI	CTAG	2 cut(s)	141, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.