Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006379

Physical Location & Seq

Genomic Coordinates Reverse (-)

22389223 .. 22391605

Gene Structure 2383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G216700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGACTTACCTGAGCCTGGAAAGTTGTTCGTGGCTAGACTACCAAAGACGGTTAGTGAAAGCAACATAAAAGAACACTTCAACAAATATGGTGAAGTAAAGGACTGTGTGATTGTTGTGGACAAAGTTACTCGTAGGCCAAAAGGGTTTGCCTTTGTTACCTTCACTGACCCATTCATGGCTAAGAAAGCATTGGAAGTAGAGCACTACATCTTCGGAAGAAAGTTAGATGTGAAACCTGCTTTACCAAAGAGAGAGGAACTCCAGAACCAAGAGGACGAGCAAGCTAAAGCATACTTCAAGACCAAGAAGATTTTTGTGGGAGGATTACCACATAATCTGACACAAGAAGAATTCAAGAGCTATTTTGAGAAGTTTGGTACAATCATAAATGGGGTTATAATATATATCAAGGAAAGCGGCAAGTCCAGGGGCTTCGGCTTTATCACTTTTGATTCAGAGGAGGCTGTGGATGAAGTCACCAAGGAAACCCATCATGAACTGAATGATAAATTTGTTGAGGTGAAGAGGGCTTGGCCTAAGCACAAGAATGACAACATGATCCACACGTTTGACTGCAATGAAGTTGGGTTTAATTTTGGAGGGTCACAGTGTGATTATTATAGCAATTTTATGCTTTATGGCGCTCGTTGCTTTAGTTGCTTACTTCCTTATGGATTTGGGCACCACGAAGGGTGTTTGTATTATGGTCAAAACACAGCTGGTTATATCACATGGCAGCCAAAGAAAGTTCCTACAAACTTTGGAATGGAGAAGACAACGCAGACTCATGCATGCCCATATGAGAATTCAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

273

Amino Acids

31.32

Weight (kDa)

7.13

Isoelectric Point (pI)

34.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006379)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02790 FvH4_1g18000
malus_domestica	MD02G1189700.v1.1
prunus_persica	Prupe.6G216700_v2.0.a1
pyrus_communis	pycom02g15380
rosa_chinensis	RchiOBHm_Chr2g0087881 RchiOBHm_Chr2g0108481
rosa_laevigata	RLG00000015909 RLG00000017672
rosa_multiflora	Rmu_co8200454.1_g000001 Rmu_sc0002372.1_g000049 Rmu_sc0008385.1_g000021 Rmu_sc0014136.1_g000014
rosa_roxburghii	Rroxscaffold_2G00135100
rosa_rugosa	Rorug01G0479100 Rorug02G0153700 Rorug02G0155900
rosa_samantha	Rh2AG033900 Rh2AG202400 Rh2BG033100 Rh2BG215400 Rh2CG033800 Rh2CG206600 Rh2DG033500 Rh2DG209700
rosa_wichuraiana	Rw2G002660 Rw2G016180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	401
Acc36I	ACCTGC	1 cut(s)	247
AccB1I	GGYRCC	1 cut(s)	684
AciI	CCGC	1 cut(s)	420
AclWI	GGATC	1 cut(s)	556
AcsI	RAATTY	3 cut(s)	353, 512, 808
AdeI	CACNNNGTG	1 cut(s)	614
AfaI	GTAC	1 cut(s)	382
AfiI	CCNNNNNNNGG	2 cut(s)	17, 178
AflIII	ACRYGT	1 cut(s)	567
AgsI	TTSAA	3 cut(s)	82, 301, 358
AjnI	CCWGG	2 cut(s)	16, 428
AluBI	AGCT	3 cut(s)	287, 363, 722
AluI	AGCT	3 cut(s)	287, 363, 722
Alw21I	GWGCWC	1 cut(s)	207
AlwI	GGATC	1 cut(s)	556
AoxI	GGCC	2 cut(s)	137, 536
ApeKI	GCWGC	1 cut(s)	739
ApoI	RAATTY	3 cut(s)	353, 512, 808
AspLEI	GCGC	1 cut(s)	647
AsuHPI	GGTGA	3 cut(s)	104, 472, 535
BaeGI	GKGCMC	1 cut(s)	687
BanI	GGYRCC	1 cut(s)	684
BbsI	GAAGAC	1 cut(s)	782
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	751
BccI	CCATC	1 cut(s)	501
BciT130I	CCWGG	2 cut(s)	18, 430
BfaI	CTAG	1 cut(s)	36
BfoI	RGCGCY	1 cut(s)	648
BfuAI	ACCTGC	1 cut(s)	247
BisI	GCNGC	2 cut(s)	421, 740
BlsI	GCNGC	2 cut(s)	422, 741
Bme1390I	CCNGG	2 cut(s)	18, 430
BmiI	GGNNCC	1 cut(s)	686
BmrFI	CCNGG	2 cut(s)	18, 430
BpiI	GAAGAC	1 cut(s)	782
BplI	GAGNNNNNCTC	2 cut(s)	246, 278
BpmI	CTGGAG	1 cut(s)	248
Bpu10I	CCTNAGC	2 cut(s)	12, 540
BsaJI	CCNNGG	2 cut(s)	429, 483
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 178
Bse3DI	GCAATG	1 cut(s)	586
BseBI	CCWGG	2 cut(s)	18, 430
BseDI	CCNNGG	2 cut(s)	429, 483
BseGI	GGATG	1 cut(s)	478
BseLI	CCNNNNNNNGG	2 cut(s)	17, 178
BseMI	GCAATG	1 cut(s)	586
BseRI	GAGGAG	1 cut(s)	476
BseSI	GKGCMC	1 cut(s)	687
BseXI	GCAGC	1 cut(s)	751
BshFI	GGCC	2 cut(s)	139, 538
BshNI	GGYRCC	1 cut(s)	684
BsiHKAI	GWGCWC	1 cut(s)	207
BslI	CCNNNNNNNGG	2 cut(s)	17, 178
BsnI	GGCC	2 cut(s)	139, 538
Bsp1286I	GDGCHC	2 cut(s)	207, 687
Bsp143I	GATC	1 cut(s)	561
BspACI	CCGC	1 cut(s)	420
BspANI	GGCC	2 cut(s)	139, 538
BspCNI	CTCAG	1 cut(s)	4
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	1 cut(s)	686
BspMI	ACCTGC	1 cut(s)	247
BspPI	GGATC	1 cut(s)	556
BspT107I	GGYRCC	1 cut(s)	684
BsrDI	GCAATG	1 cut(s)	586
BssECI	CCNNGG	2 cut(s)	429, 483
BssMI	GATC	1 cut(s)	561
BssT1I	CCWWGG	1 cut(s)	483
Bst2UI	CCWGG	2 cut(s)	18, 430
Bst4CI	ACNGT	3 cut(s)	52, 107, 612
Bst6I	CTCTTC	1 cut(s)	521
BstC8I	GCNNGC	2 cut(s)	285, 796
BstDEI	CTNAG	3 cut(s)	12, 183, 540
BstF5I	GGATG	1 cut(s)	478
BstH2I	RGCGCY	1 cut(s)	648
BstHHI	GCGC	1 cut(s)	647
BstKTI	GATC	1 cut(s)	564
BstMBI	GATC	1 cut(s)	561
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 651, 660
BstNI	CCWGG	2 cut(s)	18, 430
BstNSI	RCATGY	1 cut(s)	798
BstSCI	CCNGG	2 cut(s)	16, 428
BstSLI	GKGCMC	1 cut(s)	687
BstV1I	GCAGC	1 cut(s)	751
BstV2I	GAAGAC	1 cut(s)	782
BsuRI	GGCC	2 cut(s)	139, 538
BtsCI	GGATG	1 cut(s)	478
BtsIMutI	CAGTG	2 cut(s)	165, 617
BveI	ACCTGC	1 cut(s)	247
Cac8I	GCNNGC	2 cut(s)	285, 796
CciI	TCATGA	1 cut(s)	496
CfoI	GCGC	1 cut(s)	647
Csp6I	GTAC	1 cut(s)	381
CviAII	CATG	6 cut(s)	178, 497, 559, 735, 791, 795
CviQI	GTAC	1 cut(s)	381
DdeI	CTNAG	3 cut(s)	12, 183, 540
DpnI	GATC	1 cut(s)	563
DpnII	GATC	1 cut(s)	561
DraIII	CACNNNGTG	1 cut(s)	614
Eam1104I	CTCTTC	1 cut(s)	521
EarI	CTCTTC	1 cut(s)	521
Eco130I	CCWWGG	1 cut(s)	483
EcoRI	GAATTC	2 cut(s)	353, 808
EcoRII	CCWGG	2 cut(s)	16, 428
EcoT14I	CCWWGG	1 cut(s)	483
EcoT22I	ATGCAT	1 cut(s)	796
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	6 cut(s)	181, 500, 562, 738, 794, 798
FatI	CATG	6 cut(s)	177, 496, 558, 734, 790, 794
FauNDI	CATATG	1 cut(s)	802
Fnu4HI	GCNGC	2 cut(s)	421, 740
FokI	GGATG	1 cut(s)	485
Fsp4HI	GCNGC	2 cut(s)	421, 740
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	1 cut(s)	646
GluI	GCNGC	2 cut(s)	421, 740
GsuI	CTGGAG	1 cut(s)	248
HaeII	RGCGCY	1 cut(s)	648
HaeIII	GGCC	2 cut(s)	139, 538
HhaI	GCGC	1 cut(s)	647
Hin1II	CATG	6 cut(s)	181, 500, 562, 738, 794, 798
Hin6I	GCGC	1 cut(s)	645
HinP1I	GCGC	1 cut(s)	645
HinfI	GANTC	2 cut(s)	455, 787
HphI	GGTGA	3 cut(s)	104, 472, 535
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	3 cut(s)	218, 342, 460
Hpy188III	TCNNGA	4 cut(s)	265, 301, 358, 497
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	2 cut(s)	172, 686
HpyCH4III	ACNGT	3 cut(s)	52, 107, 612
HpyCH4IV	ACGT	1 cut(s)	569
HpyCH4V	TGCA	2 cut(s)	579, 794
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 651, 660
HpyF3I	CTNAG	3 cut(s)	12, 183, 540
HpySE526I	ACGT	1 cut(s)	569
Hsp92II	CATG	6 cut(s)	181, 500, 562, 738, 794, 798
HspAI	GCGC	1 cut(s)	645
Kzo9I	GATC	1 cut(s)	561
LpnPI	CCDG	8 cut(s)	3, 24, 30, 252, 278, 415, 442, 708
Lsp1109I	GCAGC	1 cut(s)	751
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	569
MaeIII	GTNAC	4 cut(s)	127, 157, 478, 606
MalI	GATC	1 cut(s)	563
MboI	GATC	1 cut(s)	561
MboII	GAAGA	6 cut(s)	205, 231, 322, 362, 538, 787
MhlI	GDGCHC	2 cut(s)	207, 687
MluCI	AATT	5 cut(s)	353, 512, 595, 628, 808
MlyI	GAGTC	1 cut(s)	781
MnlI	CCTC	8 cut(s)	250, 268, 317, 454, 457, 514, 522, 596
Mph1103I	ATGCAT	1 cut(s)	796
MseI	TTAA	1 cut(s)	594
MslI	CAYNNNNRTG	1 cut(s)	549
MspA1I	CMGCKG	1 cut(s)	722
MspR9I	CCNGG	2 cut(s)	18, 430
MvaI	CCWGG	2 cut(s)	18, 430
MwoI	GCNNNNNNNGC	3 cut(s)	188, 651, 660
NdeI	CATATG	1 cut(s)	802
NdeII	GATC	1 cut(s)	561
NlaIII	CATG	6 cut(s)	181, 500, 562, 738, 794, 798
NlaIV	GGNNCC	1 cut(s)	686
NmuCI	GTSAC	2 cut(s)	478, 606
NsiI	ATGCAT	1 cut(s)	796
NspI	RCATGY	1 cut(s)	798
PaeI	GCATGC	1 cut(s)	798
PagI	TCATGA	1 cut(s)	496
PfeI	GAWTC	1 cut(s)	455
PkrI	GCNGC	2 cut(s)	422, 741
PleI	GAGTC	1 cut(s)	781
PpsI	GAGTC	1 cut(s)	781
PsiI	TTATAA	1 cut(s)	401
Psp6I	CCWGG	2 cut(s)	16, 428
PspGI	CCWGG	2 cut(s)	16, 428
PspN4I	GGNNCC	1 cut(s)	686
PvuII	CAGCTG	1 cut(s)	722
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
RseI	CAYNNNNRTG	1 cut(s)	549
SaqAI	TTAA	1 cut(s)	594
SatI	GCNGC	2 cut(s)	421, 740
Sau3AI	GATC	1 cut(s)	561
SchI	GAGTC	1 cut(s)	781
ScrFI	CCNGG	2 cut(s)	18, 430
SduI	GDGCHC	2 cut(s)	207, 687
SetI	ASST	8 cut(s)	13, 164, 241, 289, 365, 525, 572, 724
SmiMI	CAYNNNNRTG	1 cut(s)	549
SphI	GCATGC	1 cut(s)	798
Sse9I	AATT	5 cut(s)	353, 512, 595, 628, 808
SsiI	CCGC	1 cut(s)	420
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	2 cut(s)	16, 428
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	3 cut(s)	52, 107, 612
TaiI	ACGT	1 cut(s)	572
TasI	AATT	5 cut(s)	353, 512, 595, 628, 808
TauI	GCSGC	1 cut(s)	423
TfiI	GAWTC	1 cut(s)	455
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TscAI	CASTG	2 cut(s)	172, 617
TseFI	GTSAC	2 cut(s)	478, 606
TseI	GCWGC	1 cut(s)	739
Tsp45I	GTSAC	2 cut(s)	478, 606
TspDTI	ATGAA	4 cut(s)	166, 489, 513, 597
TspRI	CASTG	2 cut(s)	172, 617
XapI	RAATTY	3 cut(s)	353, 512, 808
XceI	RCATGY	1 cut(s)	798
XspI	CTAG	1 cut(s)	36
Zsp2I	ATGCAT	1 cut(s)	796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.