Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006379

Physical Location & Seq

Genomic Coordinates Forward (+)

10464582 .. 10465752

Gene Structure 1171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g18000.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAAACAGAGCAAGAGAGAAAGTTATTTGTGGGTGGTATACCATGGCAGGTTAACGAAACTATGTTGGAAGAACACTTCAGCCAGTATGGTGAAGTAAAAGAATGCGTGATCGTTCTAGATAAAGTCAATAATTATCAACCTAGAGGGTTTGGTTTTGTTACCTTTGTTGATCGATTAGTGGCTGATAAAGTTTTGGAAGAAAATCATGTCATCTTTGACAAAAAGCTTGTCGTAAATCCCTCAGAACCACGGCGCGAGAGGAACCAGAATAACCAAAGAAATCAATATGCTCAACGTCAAAAATCTCATCACCCCAAAAAGATTTTTGTAGGGGGTTTACCACATCATCTTACAGAAGAAGAATTTATCAACTACTTTGTGAAGTTTGGTGTAATTGATAAGGGTGTGATAATTTATGATAAGGAAACCAGCACGTCAAGAGGCTTTGGTTTCATCACTTTTGAATCAGAGGAGGCGGTTAAAGATGTAATGCAGGAAAATTTTCACGAGCTAAAGAATGAGATAGTGGAGGTCCGCCGAGCTCGTCTCGAAGTAACAAGGAATAACAGAAGTTTGATGAACTGGCATGACCTTGAGAATGCAAGGTTGGAATTTGAAGGAGGACTTCGATATGATGATCTTGCTTTTGGGGTTGGTCGTCTTTTTTGCTGCAACTGTGGAGGTTCTTATGGTTACGGACATTATCCAGCGTGCTTGTGTGGGGAGGATCCTTTTAATGGAACTTGGAAGGCTCTGAGGGTTCTACATGCTTATTGGAATGGTGGTGGTGAAGTGCATCCATGGGCGTGGAATGATAATCTGCAATCCAACGAACACCTACTGACTTATGTAAACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

288

Amino Acids

33.47

Weight (kDa)

5.87

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 74	6.9e-15	RNA recognition motif
RRM_7	PF16367	107 - 181	3.7e-08	RNA recognition motif
RRM_1	PF00076	109 - 174	6.9e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006379)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02790 FvH4_1g18000
malus_domestica	MD02G1189700.v1.1
prunus_persica	Prupe.6G216700_v2.0.a1
pyrus_communis	pycom02g15380
rosa_chinensis	RchiOBHm_Chr2g0087881 RchiOBHm_Chr2g0108481
rosa_laevigata	RLG00000015909 RLG00000017672
rosa_multiflora	Rmu_co8200454.1_g000001 Rmu_sc0002372.1_g000049 Rmu_sc0008385.1_g000021 Rmu_sc0014136.1_g000014
rosa_roxburghii	Rroxscaffold_2G00135100
rosa_rugosa	Rorug01G0479100 Rorug02G0153700 Rorug02G0155900
rosa_samantha	Rh2AG033900 Rh2AG202400 Rh2BG033100 Rh2BG215400 Rh2CG033800 Rh2CG206600 Rh2DG033500 Rh2DG209700
rosa_wichuraiana	Rw2G002660 Rw2G016180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	40
AccI	GTMKAC	1 cut(s)	40
AccII	CGCG	1 cut(s)	258
AciI	CCGC	2 cut(s)	479, 538
AclWI	GGATC	2 cut(s)	725, 738
AcsI	RAATTY	3 cut(s)	365, 502, 614
AcuI	CTGAAG	1 cut(s)	64
AfiI	CCNNNNNNNGG	1 cut(s)	740
AgsI	TTSAA	2 cut(s)	467, 620
AjiI	CACGTC	1 cut(s)	438
AjuI	GAANNNNNNNTTGG	2 cut(s)	593, 625
AluBI	AGCT	3 cut(s)	229, 514, 545
AluI	AGCT	3 cut(s)	229, 514, 545
Alw21I	GWGCWC	1 cut(s)	547
Alw26I	GTCTC	1 cut(s)	554
AlwI	GGATC	2 cut(s)	725, 738
ApeKI	GCWGC	1 cut(s)	672
ApoI	RAATTY	3 cut(s)	365, 502, 614
ArsI	GACNNNNNNTTYG	2 cut(s)	216, 248
Asp700I	GAANNNNTTC	1 cut(s)	504
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	535
AsuHPI	GGTGA	3 cut(s)	104, 305, 803
AvaII	GGWCC	1 cut(s)	535
BamHI	GGATCC	1 cut(s)	730
BanII	GRGCYC	1 cut(s)	547
BauI	CACGAG	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	547
BbvI	GCAGC	1 cut(s)	659
BceAI	ACGGC	1 cut(s)	269
BcoDI	GTCTC	1 cut(s)	554
BfaI	CTAG	2 cut(s)	119, 144
BfuAI	ACCTGC	1 cut(s)	40
BisI	GCNGC	1 cut(s)	673
BlsI	GCNGC	1 cut(s)	674
Bme18I	GGWCC	1 cut(s)	535
BmgBI	CACGTC	1 cut(s)	438
BmgT120I	GGNCC	1 cut(s)	535
BmiI	GGNNCC	2 cut(s)	266, 732
BmsI	GCATC	1 cut(s)	808
BplI	GAGNNNNNCTC	2 cut(s)	534, 566
BpuEI	CTTGAG	1 cut(s)	617
Bsa29I	ATCGAT	1 cut(s)	175
BsaJI	CCNNGG	3 cut(s)	44, 251, 803
Bsc4I	CCNNNNNNNGG	1 cut(s)	740
Bse1I	ACTGG	2 cut(s)	85, 590
BseCI	ATCGAT	1 cut(s)	175
BseDI	CCNNGG	3 cut(s)	44, 251, 803
BseGI	GGATG	1 cut(s)	799
BseLI	CCNNNNNNNGG	1 cut(s)	740
BseMII	CTCAG	2 cut(s)	258, 749
BseNI	ACTGG	2 cut(s)	85, 590
BseRI	GAGGAG	1 cut(s)	488
BseXI	GCAGC	1 cut(s)	659
Bsh1236I	CGCG	1 cut(s)	258
BshVI	ATCGAT	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	547
BslI	CCNNNNNNNGG	1 cut(s)	740
BsmAI	GTCTC	1 cut(s)	554
BsmBI	CGTCTC	1 cut(s)	554
BsmI	GAATGC	2 cut(s)	110, 607
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp143I	GATC	4 cut(s)	111, 172, 640, 730
Bsp19I	CCATGG	2 cut(s)	44, 803
BspACI	CCGC	2 cut(s)	479, 538
BspCNI	CTCAG	2 cut(s)	257, 750
BspDI	ATCGAT	1 cut(s)	175
BspFNI	CGCG	1 cut(s)	258
BspLI	GGNNCC	2 cut(s)	266, 732
BspMI	ACCTGC	1 cut(s)	40
BspPI	GGATC	2 cut(s)	725, 738
BsrI	ACTGG	2 cut(s)	85, 590
BssECI	CCNNGG	3 cut(s)	44, 251, 803
BssMI	GATC	4 cut(s)	111, 172, 640, 730
BssNAI	GTATAC	1 cut(s)	41
BssSI	CACGAG	1 cut(s)	509
BssT1I	CCWWGG	2 cut(s)	44, 803
Bst1107I	GTATAC	1 cut(s)	41
Bst2BI	CACGAG	1 cut(s)	509
Bst4CI	ACNGT	1 cut(s)	680
BstC8I	GCNNGC	1 cut(s)	715
BstDEI	CTNAG	2 cut(s)	244, 758
BstDSI	CCRYGG	3 cut(s)	44, 251, 803
BstF5I	GGATG	1 cut(s)	799
BstFNI	CGCG	1 cut(s)	258
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	4 cut(s)	114, 175, 643, 733
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	4 cut(s)	111, 172, 640, 730
BstNSI	RCATGY	1 cut(s)	773
BstUI	CGCG	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	659
BstX2I	RGATCY	1 cut(s)	730
BstXI	CCANNNNNNTGG	1 cut(s)	810
BstYI	RGATCY	1 cut(s)	730
BstZ17I	GTATAC	1 cut(s)	41
Bsu15I	ATCGAT	1 cut(s)	175
BsuTUI	ATCGAT	1 cut(s)	175
BtgI	CCRYGG	3 cut(s)	44, 251, 803
BtrI	CACGTC	1 cut(s)	438
BtsCI	GGATG	1 cut(s)	799
BveI	ACCTGC	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	715
CfoI	GCGC	1 cut(s)	258
Cfr13I	GGNCC	1 cut(s)	535
ClaI	ATCGAT	1 cut(s)	175
CviAII	CATG	5 cut(s)	45, 209, 590, 770, 804
CviJI	RGCY	7 cut(s)	84, 185, 229, 447, 514, 545, 755
CviKI_1	RGCY	7 cut(s)	84, 185, 229, 447, 514, 545, 755
DdeI	CTNAG	2 cut(s)	244, 758
DpnI	GATC	4 cut(s)	113, 174, 642, 732
DpnII	GATC	4 cut(s)	111, 172, 640, 730
EciI	GGCGGA	1 cut(s)	527
Ecl136II	GAGCTC	1 cut(s)	545
Eco130I	CCWWGG	2 cut(s)	44, 803
Eco24I	GRGCYC	1 cut(s)	547
Eco47I	GGWCC	1 cut(s)	535
Eco53kI	GAGCTC	1 cut(s)	545
Eco57I	CTGAAG	1 cut(s)	64
EcoICRI	GAGCTC	1 cut(s)	545
EcoT14I	CCWWGG	2 cut(s)	44, 803
EcoT38I	GRGCYC	1 cut(s)	547
ErhI	CCWWGG	2 cut(s)	44, 803
Esp3I	CGTCTC	1 cut(s)	554
FaeI	CATG	5 cut(s)	48, 212, 593, 773, 807
FalI	AAGNNNNNCTT	2 cut(s)	612, 644
FatI	CATG	5 cut(s)	44, 208, 589, 769, 803
FblI	GTMKAC	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	673
FokI	GGATG	1 cut(s)	786
FriOI	GRGCYC	1 cut(s)	547
Fsp4HI	GCNGC	1 cut(s)	673
FspBI	CTAG	2 cut(s)	119, 144
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	1 cut(s)	673
HhaI	GCGC	1 cut(s)	258
Hin1II	CATG	5 cut(s)	48, 212, 593, 773, 807
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	1 cut(s)	467
HpaI	GTTAAC	1 cut(s)	55
HphI	GGTGA	3 cut(s)	104, 305, 803
Hpy166II	GTNNAC	4 cut(s)	41, 55, 341, 856
Hpy188I	TCNGA	3 cut(s)	247, 472, 759
Hpy188III	TCNNGA	4 cut(s)	119, 441, 509, 551
Hpy8I	GTNNAC	4 cut(s)	41, 55, 341, 856
HpyAV	CCTTC	2 cut(s)	614, 745
HpyCH4III	ACNGT	1 cut(s)	680
HpyCH4IV	ACGT	2 cut(s)	298, 437
HpyCH4V	TGCA	5 cut(s)	496, 605, 675, 799, 826
HpyF3I	CTNAG	2 cut(s)	244, 758
HpySE526I	ACGT	2 cut(s)	298, 437
Hsp92II	CATG	5 cut(s)	48, 212, 593, 773, 807
HspAI	GCGC	1 cut(s)	256
KspAI	GTTAAC	1 cut(s)	55
Kzo9I	GATC	4 cut(s)	111, 172, 640, 730
LpnPI	CCDG	7 cut(s)	35, 98, 281, 445, 482, 571, 723
Lsp1109I	GCAGC	1 cut(s)	659
LweI	GCATC	1 cut(s)	808
MaeI	CTAG	2 cut(s)	119, 144
MaeII	ACGT	2 cut(s)	298, 437
MaeIII	GTNAC	3 cut(s)	160, 556, 695
MalI	GATC	4 cut(s)	113, 174, 642, 732
MboI	GATC	4 cut(s)	111, 172, 640, 730
MboII	GAAGA	4 cut(s)	83, 212, 371, 374
MflI	RGATCY	1 cut(s)	730
MhlI	GDGCHC	1 cut(s)	547
MluCI	AATT	6 cut(s)	133, 365, 396, 414, 502, 614
MmeI	TCCRAC	3 cut(s)	48, 591, 855
MroXI	GAANNNNTTC	1 cut(s)	504
MseI	TTAA	3 cut(s)	54, 483, 738
MslI	CAYNNNNRTG	1 cut(s)	808
Mva1269I	GAATGC	2 cut(s)	110, 607
MvnI	CGCG	1 cut(s)	258
NcoI	CCATGG	2 cut(s)	44, 803
NdeII	GATC	4 cut(s)	111, 172, 640, 730
NlaIII	CATG	5 cut(s)	48, 212, 593, 773, 807
NlaIV	GGNNCC	2 cut(s)	266, 732
NmeAIII	GCCGAG	1 cut(s)	566
NspI	RCATGY	1 cut(s)	773
PctI	GAATGC	2 cut(s)	110, 607
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	1 cut(s)	467
PkrI	GCNGC	1 cut(s)	674
Psp124BI	GAGCTC	1 cut(s)	547
PspN4I	GGNNCC	2 cut(s)	266, 732
PspPI	GGNCC	1 cut(s)	535
PsuI	RGATCY	1 cut(s)	730
RseI	CAYNNNNRTG	1 cut(s)	808
SacI	GAGCTC	1 cut(s)	547
SaqAI	TTAA	3 cut(s)	54, 483, 738
SatI	GCNGC	1 cut(s)	673
Sau3AI	GATC	4 cut(s)	111, 172, 640, 730
Sau96I	GGNCC	1 cut(s)	535
SduI	GDGCHC	1 cut(s)	547
SfaNI	GCATC	1 cut(s)	808
SinI	GGWCC	1 cut(s)	535
SmiMI	CAYNNNNRTG	1 cut(s)	808
SmlI	CTYRAG	1 cut(s)	596
SmoI	CTYRAG	1 cut(s)	596
Sse9I	AATT	6 cut(s)	133, 365, 396, 414, 502, 614
SsiI	CCGC	2 cut(s)	479, 538
SspMI	CTAG	2 cut(s)	119, 144
SstI	GAGCTC	1 cut(s)	547
StyI	CCWWGG	2 cut(s)	44, 803
TaaI	ACNGT	1 cut(s)	680
TaiI	ACGT	2 cut(s)	301, 440
TaqI	TCGA	3 cut(s)	175, 552, 631
TasI	AATT	6 cut(s)	133, 365, 396, 414, 502, 614
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	3 cut(s)	54, 483, 738
Tru9I	TTAA	3 cut(s)	54, 483, 738
TseI	GCWGC	1 cut(s)	672
TspDTI	ATGAA	2 cut(s)	445, 596
TspGWI	ACGGA	1 cut(s)	714
VpaK11BI	GGWCC	1 cut(s)	535
XapI	RAATTY	3 cut(s)	365, 502, 614
XbaI	TCTAGA	1 cut(s)	118
XceI	RCATGY	1 cut(s)	773
XmiI	GTMKAC	1 cut(s)	40
XmnI	GAANNNNTTC	1 cut(s)	504
XspI	CTAG	2 cut(s)	119, 144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.