Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0006379

Physical Location & Seq

Genomic Coordinates Forward (+)

17452553 .. 17453705

Gene Structure 1153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1189700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGAACCTCAGCCCAGAAGGTTGTACGTGGCTAACTTACCGAACAAGTTTACTGAAACTACCATGAAAGAATACTTCTGCAAGTATGGTGAAGTAAAGGACTGTGTGATTATCGTAGACAAAGTTACTCGTAAACCTAGAGGATTCGGCTTTGTTTCCTTCACTCACCCATCGGTGGCTGAACAAGTCATGGGAGAAGGGCACATCATCCTCGGTAGAAAGGTAGATGTGAAGACAGCTTTACCAAAGAGTACTGTGAAAAACCAAAACCAAGAGGACCAACATGCTCAATCCGAACCATCTTATAACGCCAGAAGGATTTTTGTTGGAGGTTTACCACACAATCTAACGCAAGAGGAATTCAAGAACTACTTTGAGAAGTTCGACACAGTTACGGATGCGGTTATAGTATGTTGCAAGGAAAGTGGCAAGTCCAGGGGCTTTGGCTTCATCACTTTTGAATCAGAGGACGCCGCGGATGAAGCCTTGCAGAACAAATATCATGAATTGAATGATAAATTCGTGGAGGTAAAGAGGGCTGTGCCGATGGTTACAAATAAGAATCCGGTCACGACATATGACCGTAACCGATGGTGTTTACTGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

203

Amino Acids

23.22

Weight (kDa)

8.21

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	8 - 73	2.1e-14	RNA recognition motif
RRM_7	PF16367	105 - 178	5e-06	RNA recognition motif
RRM_1	PF00076	107 - 169	9.9e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006379)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02790 FvH4_1g18000
malus_domestica	MD02G1189700.v1.1
prunus_persica	Prupe.6G216700_v2.0.a1
pyrus_communis	pycom02g15380
rosa_chinensis	RchiOBHm_Chr2g0087881 RchiOBHm_Chr2g0108481
rosa_laevigata	RLG00000015909 RLG00000017672
rosa_multiflora	Rmu_co8200454.1_g000001 Rmu_sc0002372.1_g000049 Rmu_sc0008385.1_g000021 Rmu_sc0014136.1_g000014
rosa_roxburghii	Rroxscaffold_2G00135100
rosa_rugosa	Rorug01G0479100 Rorug02G0153700 Rorug02G0155900
rosa_samantha	Rh2AG033900 Rh2AG202400 Rh2BG033100 Rh2BG215400 Rh2CG033800 Rh2CG206600 Rh2DG033500 Rh2DG209700
rosa_wichuraiana	Rw2G002660 Rw2G016180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	306
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	1 cut(s)	476
AciI	CCGC	3 cut(s)	401, 474, 476
AcsI	RAATTY	2 cut(s)	359, 518
AcyI	GRCGYC	1 cut(s)	471
AfaI	GTAC	2 cut(s)	26, 253
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	3 cut(s)	364, 461, 511
AjnI	CCWGG	1 cut(s)	434
AluBI	AGCT	1 cut(s)	239
AluI	AGCT	1 cut(s)	239
ApoI	RAATTY	2 cut(s)	359, 518
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	2 cut(s)	101, 158
AvaII	GGWCC	1 cut(s)	277
BaeGI	GKGCMC	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	239
BbvCI	CCTCAGC	1 cut(s)	9
BccI	CCATC	4 cut(s)	178, 307, 541, 585
BciT130I	CCWGG	1 cut(s)	436
BfaI	CTAG	1 cut(s)	138
BisI	GCNGC	1 cut(s)	474
BlsI	GCNGC	1 cut(s)	475
BmcAI	AGTACT	1 cut(s)	253
Bme1390I	CCNGG	1 cut(s)	436
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	436
BmsI	GCATC	1 cut(s)	388
BpiI	GAAGAC	1 cut(s)	239
Bpu10I	CCTNAGC	1 cut(s)	9
BsaAI	YACGTR	1 cut(s)	28
BsaHI	GRCGYC	1 cut(s)	471
BsaJI	CCNNGG	3 cut(s)	211, 435, 474
BsaWI	WCCGGW	1 cut(s)	565
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	436
BseDI	CCNNGG	3 cut(s)	211, 435, 474
BseGI	GGATG	3 cut(s)	207, 403, 484
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	23
BseSI	GKGCMC	1 cut(s)	204
Bsh1236I	CGCG	1 cut(s)	476
BsiSI	CCGG	1 cut(s)	566
BslI	CCNNNNNNNGG	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	204
BspACI	CCGC	3 cut(s)	401, 474, 476
BspCNI	CTCAG	1 cut(s)	22
BspFNI	CGCG	1 cut(s)	476
BspHI	TCATGA	1 cut(s)	502
BspLI	GGNNCC	1 cut(s)	6
BssECI	CCNNGG	3 cut(s)	211, 435, 474
BssNI	GRCGYC	1 cut(s)	471
Bst2UI	CCWGG	1 cut(s)	436
Bst4CI	ACNGT	4 cut(s)	104, 256, 391, 584
BstACI	GRCGYC	1 cut(s)	471
BstBAI	YACGTR	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	9
BstDSI	CCRYGG	1 cut(s)	474
BstF5I	GGATG	3 cut(s)	207, 403, 484
BstFNI	CGCG	1 cut(s)	476
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstNI	CCWGG	1 cut(s)	436
BstNSI	RCATGY	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	434
BstSLI	GKGCMC	1 cut(s)	204
BstUI	CGCG	1 cut(s)	476
BstV2I	GAAGAC	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	474
BtsCI	GGATG	3 cut(s)	207, 403, 484
CciI	TCATGA	1 cut(s)	502
Cfr13I	GGNCC	1 cut(s)	277
Cfr42I	CCGCGG	1 cut(s)	477
CseI	GACGC	1 cut(s)	479
Csp6I	GTAC	2 cut(s)	25, 252
CspCI	CAANNNNNGTGG	2 cut(s)	406, 441
CviAII	CATG	4 cut(s)	64, 190, 284, 503
CviJI	RGCY	9 cut(s)	13, 32, 150, 179, 239, 441, 447, 485, 539
CviKI_1	RGCY	9 cut(s)	13, 32, 150, 179, 239, 441, 447, 485, 539
CviQI	GTAC	2 cut(s)	25, 252
DdeI	CTNAG	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	277
EcoRI	GAATTC	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	434
FaeI	CATG	4 cut(s)	67, 193, 287, 506
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FatI	CATG	4 cut(s)	63, 189, 283, 502
FauNDI	CATATG	1 cut(s)	577
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	474
FokI	GGATG	3 cut(s)	194, 410, 491
Fsp4HI	GCNGC	1 cut(s)	474
FspBI	CTAG	1 cut(s)	138
GluI	GCNGC	1 cut(s)	474
HapII	CCGG	1 cut(s)	566
HgaI	GACGC	1 cut(s)	479
Hin1I	GRCGYC	1 cut(s)	471
Hin1II	CATG	4 cut(s)	67, 193, 287, 506
HinfI	GANTC	3 cut(s)	144, 461, 562
HpaII	CCGG	1 cut(s)	566
HphI	GGTGA	2 cut(s)	101, 158
Hpy166II	GTNNAC	5 cut(s)	51, 118, 134, 335, 599
Hpy188I	TCNGA	2 cut(s)	295, 466
Hpy188III	TCNNGA	3 cut(s)	364, 503, 571
Hpy8I	GTNNAC	5 cut(s)	51, 118, 134, 335, 599
HpyAV	CCTTC	4 cut(s)	12, 169, 191, 309
HpyCH4III	ACNGT	4 cut(s)	104, 256, 391, 584
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	4 cut(s)	81, 417, 490, 604
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	1 cut(s)	9
HpySE526I	ACGT	1 cut(s)	27
Hsp92I	GRCGYC	1 cut(s)	471
Hsp92II	CATG	4 cut(s)	67, 193, 287, 506
KspI	CCGCGG	1 cut(s)	477
LpnPI	CCDG	5 cut(s)	28, 325, 421, 448, 579
LweI	GCATC	1 cut(s)	388
MaeI	CTAG	1 cut(s)	138
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	5 cut(s)	124, 391, 550, 568, 584
MboII	GAAGA	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	3 cut(s)	359, 506, 518
MmeI	TCCRAC	1 cut(s)	307
MnlI	CCTC	9 cut(s)	18, 134, 221, 268, 323, 349, 460, 520, 528
MspA1I	CMGCKG	1 cut(s)	476
MspI	CCGG	1 cut(s)	566
MspR9I	CCNGG	1 cut(s)	436
MvaI	CCWGG	1 cut(s)	436
MvnI	CGCG	1 cut(s)	476
MwoI	GCNNNNNNNGC	1 cut(s)	482
NdeI	CATATG	1 cut(s)	577
NlaIII	CATG	4 cut(s)	67, 193, 287, 506
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	568
NspI	RCATGY	1 cut(s)	287
PagI	TCATGA	1 cut(s)	502
PfeI	GAWTC	3 cut(s)	144, 461, 562
PkrI	GCNGC	1 cut(s)	475
Ppu21I	YACGTR	1 cut(s)	28
PsiI	TTATAA	1 cut(s)	306
Psp6I	CCWGG	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	434
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	277
RsaI	GTAC	2 cut(s)	26, 253
RsaNI	GTAC	2 cut(s)	25, 252
SacII	CCGCGG	1 cut(s)	477
SatI	GCNGC	1 cut(s)	474
Sau96I	GGNCC	1 cut(s)	277
ScaI	AGTACT	1 cut(s)	253
ScrFI	CCNGG	1 cut(s)	436
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	8 cut(s)	10, 23, 30, 139, 225, 241, 334, 531
SfaNI	GCATC	1 cut(s)	388
Sfr303I	CCGCGG	1 cut(s)	477
SgrBI	CCGCGG	1 cut(s)	477
SinI	GGWCC	1 cut(s)	277
Sse9I	AATT	3 cut(s)	359, 506, 518
SsiI	CCGC	3 cut(s)	401, 474, 476
SspMI	CTAG	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	434
TaaI	ACNGT	4 cut(s)	104, 256, 391, 584
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	1 cut(s)	384
TasI	AATT	3 cut(s)	359, 506, 518
TatI	WGTACW	1 cut(s)	251
TauI	GCSGC	1 cut(s)	476
TfiI	GAWTC	3 cut(s)	144, 461, 562
TseFI	GTSAC	1 cut(s)	568
Tsp45I	GTSAC	1 cut(s)	568
TspDTI	ATGAA	4 cut(s)	80, 439, 495, 519
TspGWI	ACGGA	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	2 cut(s)	359, 518
XceI	RCATGY	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	1 cut(s)	138
ZrmI	AGTACT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.