Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006379

Physical Location & Seq

Genomic Coordinates Forward (+)

12191053 .. 12192293

Gene Structure 1241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g15380.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGAACCTCAGCCCGGAAGGTTGTACGTGGCTAACTTACCGAACGAGTTTACTGAAACTACCATGAAAGAATACTTCAGCAAGTATGGTGAAGTAAAGGACTGTGTGATTATTGTAGACAAAGTTACTCGTAAACCTAGAGGATTCGGCTTTGTTTCCTTCACTCACCCATCGGTGGCTGAACAAGTCATGGGAGAAGGGCACATCATCCTCGGTAGAAAGGTAGATGTGAAGACAGCTTTACCAAAAAGTACTCTGAAAAACCAAAACCAAGAGGACCAACATGCTCAATCCGAACCATCTTATAACGCCAGAAGGATTTTTGTTGGAGGTTTACCACACAATCTAACGCAAGGGGAATTCAAGAACTACTTTGAGAAGTTCGACACAGTTACGGATGCAGTTATAGTATGTTGCAAGGAAAGTGGCAAGTCCAGGGGCTTTGGCTTCATCACTTTTGAATCAGAGGACGCCGCGGATGATGCCTTGCAGAACAAATATCATGAATTGAATGATAAATTCGTGGAGGTAAAGAGGGCTGTGCCGATGGGTACGAATGAGAATCCGGTCACAACATATGACCGTAACCGAGTAGAATTCGATTATGGAACAAGGCCTCATCGGTTTGGAAATTTTGGAAATTTGTTCTATAGTGGTGCTTACTGCATTAGTTGTTTGAGTCCTTATGAGGTTGGACACCAAGAAGGGTGCCGTCCACTTGGTTATCTTTTCCCTTATGTATGTCCGTACGACCATCAAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

255

Amino Acids

28.89

Weight (kDa)

6.08

Isoelectric Point (pI)

34.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006379)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02790 FvH4_1g18000
malus_domestica	MD02G1189700.v1.1
prunus_persica	Prupe.6G216700_v2.0.a1
pyrus_communis	pycom02g15380
rosa_chinensis	RchiOBHm_Chr2g0087881 RchiOBHm_Chr2g0108481
rosa_laevigata	RLG00000015909 RLG00000017672
rosa_multiflora	Rmu_co8200454.1_g000001 Rmu_sc0002372.1_g000049 Rmu_sc0008385.1_g000021 Rmu_sc0014136.1_g000014
rosa_roxburghii	Rroxscaffold_2G00135100
rosa_rugosa	Rorug01G0479100 Rorug02G0153700 Rorug02G0155900
rosa_samantha	Rh2AG033900 Rh2AG202400 Rh2BG033100 Rh2BG215400 Rh2CG033800 Rh2CG206600 Rh2DG033500 Rh2DG209700
rosa_wichuraiana	Rw2G002660 Rw2G016180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	306
AasI	GACNNNNNNGTC	1 cut(s)	758
AccB1I	GGYRCC	1 cut(s)	708
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	1 cut(s)	476
AciI	CCGC	2 cut(s)	474, 476
AcsI	RAATTY	5 cut(s)	359, 518, 596, 631, 640
AcuI	CTGAAG	1 cut(s)	61
AcyI	GRCGYC	1 cut(s)	471
AfaI	GTAC	4 cut(s)	26, 253, 553, 749
AfiI	CCNNNNNNNGG	2 cut(s)	14, 175
AgsI	TTSAA	3 cut(s)	364, 461, 511
AjnI	CCWGG	1 cut(s)	434
AluBI	AGCT	1 cut(s)	239
AluI	AGCT	1 cut(s)	239
AoxI	GGCC	1 cut(s)	614
ApoI	RAATTY	5 cut(s)	359, 518, 596, 631, 640
AspS9I	GGNCC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	15
AsuHPI	GGTGA	2 cut(s)	101, 158
AvaII	GGWCC	1 cut(s)	277
BaeGI	GKGCMC	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	708
BbsI	GAAGAC	1 cut(s)	239
BbvCI	CCTCAGC	1 cut(s)	9
BccI	CCATC	4 cut(s)	178, 307, 541, 762
BceAI	ACGGC	1 cut(s)	696
BciT130I	CCWGG	1 cut(s)	436
BcnI	CCSGG	1 cut(s)	15
BfaI	CTAG	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	649
BisI	GCNGC	1 cut(s)	474
BlsI	GCNGC	1 cut(s)	475
BmcAI	AGTACT	1 cut(s)	253
Bme1390I	CCNGG	2 cut(s)	15, 436
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	2 cut(s)	6, 710
BmrFI	CCNGG	2 cut(s)	15, 436
BmsI	GCATC	2 cut(s)	388, 472
BpiI	GAAGAC	1 cut(s)	239
Bpu10I	CCTNAGC	1 cut(s)	9
BpuMI	CCSGG	1 cut(s)	15
BsaAI	YACGTR	1 cut(s)	28
BsaHI	GRCGYC	1 cut(s)	471
BsaJI	CCNNGG	3 cut(s)	211, 435, 474
BsaWI	WCCGGW	1 cut(s)	565
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 175
BseBI	CCWGG	1 cut(s)	436
BseDI	CCNNGG	3 cut(s)	211, 435, 474
BseGI	GGATG	3 cut(s)	207, 403, 484
BseLI	CCNNNNNNNGG	2 cut(s)	14, 175
BseMII	CTCAG	1 cut(s)	23
BseSI	GKGCMC	1 cut(s)	204
Bsh1236I	CGCG	1 cut(s)	476
BshFI	GGCC	1 cut(s)	616
BshNI	GGYRCC	1 cut(s)	708
BsiSI	CCGG	2 cut(s)	15, 566
BsiWI	CGTACG	1 cut(s)	747
BslI	CCNNNNNNNGG	2 cut(s)	14, 175
BsnI	GGCC	1 cut(s)	616
Bsp1286I	GDGCHC	1 cut(s)	204
BspACI	CCGC	2 cut(s)	474, 476
BspANI	GGCC	1 cut(s)	616
BspCNI	CTCAG	1 cut(s)	22
BspFNI	CGCG	1 cut(s)	476
BspHI	TCATGA	1 cut(s)	502
BspLI	GGNNCC	2 cut(s)	6, 710
BspT107I	GGYRCC	1 cut(s)	708
BssECI	CCNNGG	3 cut(s)	211, 435, 474
BssNI	GRCGYC	1 cut(s)	471
Bst2UI	CCWGG	1 cut(s)	436
Bst4CI	ACNGT	3 cut(s)	104, 391, 584
BstACI	GRCGYC	1 cut(s)	471
BstBAI	YACGTR	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	9
BstDSI	CCRYGG	1 cut(s)	474
BstF5I	GGATG	3 cut(s)	207, 403, 484
BstFNI	CGCG	1 cut(s)	476
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstNI	CCWGG	1 cut(s)	436
BstNSI	RCATGY	1 cut(s)	287
BstSCI	CCNGG	2 cut(s)	13, 434
BstSFI	CTRYAG	1 cut(s)	649
BstSLI	GKGCMC	1 cut(s)	204
BstUI	CGCG	1 cut(s)	476
BstV2I	GAAGAC	1 cut(s)	239
BsuRI	GGCC	1 cut(s)	616
BtgI	CCRYGG	1 cut(s)	474
BtsCI	GGATG	3 cut(s)	207, 403, 484
CciI	TCATGA	1 cut(s)	502
Cfr13I	GGNCC	1 cut(s)	277
Cfr42I	CCGCGG	1 cut(s)	477
CseI	GACGC	1 cut(s)	479
Csp6I	GTAC	4 cut(s)	25, 252, 552, 748
CspCI	CAANNNNNGTGG	2 cut(s)	406, 441
CviAII	CATG	4 cut(s)	64, 190, 284, 503
CviJI	RGCY	9 cut(s)	13, 32, 150, 179, 239, 441, 447, 539, 616
CviKI_1	RGCY	9 cut(s)	13, 32, 150, 179, 239, 441, 447, 539, 616
CviQI	GTAC	4 cut(s)	25, 252, 552, 748
DdeI	CTNAG	1 cut(s)	9
DrdI	GACNNNNNNGTC	1 cut(s)	758
DseDI	GACNNNNNNGTC	1 cut(s)	758
Eco147I	AGGCCT	1 cut(s)	616
Eco47I	GGWCC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	61
EcoRI	GAATTC	2 cut(s)	359, 596
EcoRII	CCWGG	1 cut(s)	434
FaeI	CATG	4 cut(s)	67, 193, 287, 506
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FatI	CATG	4 cut(s)	63, 189, 283, 502
FauNDI	CATATG	1 cut(s)	577
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	474
FokI	GGATG	3 cut(s)	194, 410, 491
Fsp4HI	GCNGC	1 cut(s)	474
FspBI	CTAG	1 cut(s)	138
GluI	GCNGC	1 cut(s)	474
HaeIII	GGCC	1 cut(s)	616
HapII	CCGG	2 cut(s)	15, 566
HgaI	GACGC	1 cut(s)	479
Hin1I	GRCGYC	1 cut(s)	471
Hin1II	CATG	4 cut(s)	67, 193, 287, 506
HinfI	GANTC	4 cut(s)	144, 461, 562, 679
HpaII	CCGG	2 cut(s)	15, 566
HphI	GGTGA	2 cut(s)	101, 158
Hpy166II	GTNNAC	5 cut(s)	51, 118, 134, 335, 716
Hpy188I	TCNGA	3 cut(s)	258, 295, 466
Hpy188III	TCNNGA	2 cut(s)	364, 503
Hpy8I	GTNNAC	5 cut(s)	51, 118, 134, 335, 716
HpyAV	CCTTC	5 cut(s)	12, 169, 191, 309, 698
HpyCH4III	ACNGT	3 cut(s)	104, 391, 584
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	4 cut(s)	401, 417, 490, 666
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	1 cut(s)	9
HpySE526I	ACGT	1 cut(s)	27
Hsp92I	GRCGYC	1 cut(s)	471
Hsp92II	CATG	4 cut(s)	67, 193, 287, 506
KspI	CCGCGG	1 cut(s)	477
LpnPI	CCDG	5 cut(s)	28, 325, 421, 448, 579
LweI	GCATC	2 cut(s)	388, 472
MaeI	CTAG	1 cut(s)	138
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	4 cut(s)	124, 391, 568, 584
MboII	GAAGA	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	6 cut(s)	359, 506, 518, 596, 631, 640
MlyI	GAGTC	1 cut(s)	688
MmeI	TCCRAC	2 cut(s)	307, 673
MspA1I	CMGCKG	1 cut(s)	476
MspI	CCGG	2 cut(s)	15, 566
MspR9I	CCNGG	2 cut(s)	15, 436
MvaI	CCWGG	1 cut(s)	436
MvnI	CGCG	1 cut(s)	476
MwoI	GCNNNNNNNGC	1 cut(s)	482
NciI	CCSGG	1 cut(s)	15
NdeI	CATATG	1 cut(s)	577
NlaIII	CATG	4 cut(s)	67, 193, 287, 506
NlaIV	GGNNCC	2 cut(s)	6, 710
NmuCI	GTSAC	1 cut(s)	568
NspI	RCATGY	1 cut(s)	287
PagI	TCATGA	1 cut(s)	502
PceI	AGGCCT	1 cut(s)	616
PfeI	GAWTC	3 cut(s)	144, 461, 562
Pfl23II	CGTACG	1 cut(s)	747
PkrI	GCNGC	1 cut(s)	475
PleI	GAGTC	1 cut(s)	687
PpsI	GAGTC	1 cut(s)	687
Ppu21I	YACGTR	1 cut(s)	28
PsiI	TTATAA	1 cut(s)	306
Psp6I	CCWGG	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	434
PspLI	CGTACG	1 cut(s)	747
PspN4I	GGNNCC	2 cut(s)	6, 710
PspPI	GGNCC	1 cut(s)	277
RsaI	GTAC	4 cut(s)	26, 253, 553, 749
RsaNI	GTAC	4 cut(s)	25, 252, 552, 748
SacII	CCGCGG	1 cut(s)	477
SatI	GCNGC	1 cut(s)	474
Sau96I	GGNCC	1 cut(s)	277
ScaI	AGTACT	1 cut(s)	253
SchI	GAGTC	1 cut(s)	688
ScrFI	CCNGG	2 cut(s)	15, 436
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	9 cut(s)	10, 23, 30, 139, 225, 241, 334, 531, 693
SfaNI	GCATC	2 cut(s)	388, 472
SfcI	CTRYAG	1 cut(s)	649
Sfr303I	CCGCGG	1 cut(s)	477
SgrBI	CCGCGG	1 cut(s)	477
SinI	GGWCC	1 cut(s)	277
Sse9I	AATT	6 cut(s)	359, 506, 518, 596, 631, 640
SseBI	AGGCCT	1 cut(s)	616
SsiI	CCGC	2 cut(s)	474, 476
SspMI	CTAG	1 cut(s)	138
StuI	AGGCCT	1 cut(s)	616
StyD4I	CCNGG	2 cut(s)	13, 434
TaaI	ACNGT	3 cut(s)	104, 391, 584
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	2 cut(s)	384, 600
TasI	AATT	6 cut(s)	359, 506, 518, 596, 631, 640
TatI	WGTACW	1 cut(s)	251
TauI	GCSGC	1 cut(s)	476
TfiI	GAWTC	3 cut(s)	144, 461, 562
TseFI	GTSAC	1 cut(s)	568
Tsp45I	GTSAC	1 cut(s)	568
TspDTI	ATGAA	3 cut(s)	80, 439, 519
TspGWI	ACGGA	2 cut(s)	410, 735
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	5 cut(s)	359, 518, 596, 631, 640
XceI	RCATGY	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	1 cut(s)	138
ZrmI	AGTACT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.