Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006379

Physical Location & Seq

Genomic Coordinates Reverse (-)

72723170 .. 72729921

Gene Structure 6752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00135100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGGTGCCTTGCTTTGGGTGTCCAGCTCAAAATGGGGCACCAAGCCACCAATAGTTTGGGCTATTTTTGGGCCCACTATACCCCTTTGTAAGACCCAATTTATTGGGTCTGGATTTAGGACCCAGGAGGATTACATATTCGATGGTTTGGTCTCCAAATCTCAAGATCATGACAATGATTCCATTATTGGTAATTATCTTGAGAAGGCAAAGTTACCTTCAGCTTTTGGTTTGTTAATATTAGGTGCTATGGAAGCAGAGCAAGAGAGAAAGTTGTTTGTGGGTGGAATACCATGGCAGGTTGACAAAACTATTTTGGAAGAACACTTCAGCCAATATGGTGAAGTAGAAGAATGCGTGATCGTGCTAGATAGAATCACTCGTCAACCTAGAGGGTTTGGTTTTGTTACCTTCACGGATCAATTGGTGGCTGAGAAAGTCTTGGAAGAAAACCACTCCATCTTTGACAAAAAGCGATCAACATGCTCAACTTCGAGGATCTTATCACCCCAAAAAGATATTTGTGGGGGTTTACCGCATCATCTTACAGAAGAAGAATTTATCAACTACTTTGCGAAGTTTGGCGCAATTGATGAGGGGGTGATTATGTATGAAAAGGAAACCAACACGTCGAGGGGATTTGGTTTCATCACTTTTGAATCAGATGAGGCTGTTAAAGATGTAATGCAGAAAAGTTTTCACGAACTGAAAAATGAGATAGTGGAGGTCCGGCAGGCTCGTCTCGAAGTAAGGAGGAATCACAGACGTTTGGTGAACTGGTATGACCCTGAGAATGTAAGGTCGGAACTTGTAGGAGGGCTTCGATACGATGATCTTGCTTTTGGGGTTGATCGTCTTTTCTGCTACAATTGTGGAGGTCCTTATGGTTATGGACATTATCCAGGGTGCTTGTATGGGGAAGATCCTTATAGGGGGACTTGGAATACTGTGAGGGTTCTCCATACCAATTGGGTTGGTGGTGGTGAAGTGGATCCGTGGGCGTGGAATAACGTTGAAACTGAAATTAAATCAAAGATGGGTTTCATATTGAAGGAAGAGAGGTCAAAGAAGGTTAGAGCCAGTGAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

363

Amino Acids

41.48

Weight (kDa)

5.52

Isoelectric Point (pI)

36.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	92 - 158	1.6e-15	RNA recognition motif
RRM_7	PF16367	174 - 249	4.4e-06	RNA recognition motif
RRM_1	PF00076	175 - 230	2.1e-10	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006379)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02790 FvH4_1g18000
malus_domestica	MD02G1189700.v1.1
prunus_persica	Prupe.6G216700_v2.0.a1
pyrus_communis	pycom02g15380
rosa_chinensis	RchiOBHm_Chr2g0087881 RchiOBHm_Chr2g0108481
rosa_laevigata	RLG00000015909 RLG00000017672
rosa_multiflora	Rmu_co8200454.1_g000001 Rmu_sc0002372.1_g000049 Rmu_sc0008385.1_g000021 Rmu_sc0014136.1_g000014
rosa_roxburghii	Rroxscaffold_2G00135100
rosa_rugosa	Rorug01G0479100 Rorug02G0153700 Rorug02G0155900
rosa_samantha	Rh2AG033900 Rh2AG202400 Rh2BG033100 Rh2BG215400 Rh2CG033800 Rh2CG206600 Rh2DG033500 Rh2DG209700
rosa_wichuraiana	Rw2G002660 Rw2G016180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	289
AccB1I	GGYRCC	2 cut(s)	5, 38
AciI	CCGC	1 cut(s)	536
AclI	AACGTT	1 cut(s)	1011
AclWI	GGATC	5 cut(s)	426, 506, 917, 986, 999
AcsI	RAATTY	1 cut(s)	557
AcuI	CTGAAG	2 cut(s)	204, 313
AfiI	CCNNNNNNNGG	2 cut(s)	15, 932
AflIII	ACRYGT	1 cut(s)	627
AgsI	TTSAA	3 cut(s)	659, 1016, 1051
AjiI	CACGTC	1 cut(s)	630
AjnI	CCWGG	2 cut(s)	123, 901
AluBI	AGCT	2 cut(s)	27, 224
AluI	AGCT	2 cut(s)	27, 224
Alw26I	GTCTC	2 cut(s)	157, 746
AlwI	GGATC	5 cut(s)	426, 506, 917, 986, 999
AoxI	GGCC	1 cut(s)	71
ApaI	GGGCCC	1 cut(s)	75
ApoI	RAATTY	1 cut(s)	557
AspLEI	GCGC	1 cut(s)	587
AspS9I	GGNCC	5 cut(s)	71, 72, 120, 727, 878
AsuHPI	GGTGA	5 cut(s)	353, 498, 613, 784, 995
AvaII	GGWCC	3 cut(s)	120, 727, 878
BaeGI	GKGCMC	2 cut(s)	41, 75
BamHI	GGATCC	1 cut(s)	991
BanI	GGYRCC	2 cut(s)	5, 38
BanII	GRGCYC	1 cut(s)	75
BarI	GAAGNNNNNNTAC	2 cut(s)	804, 836
BccI	CCATC	3 cut(s)	137, 467, 1030
BcgI	CGANNNNNNTGC	4 cut(s)	465, 499, 818, 852
BciT130I	CCWGG	2 cut(s)	125, 903
BcoDI	GTCTC	2 cut(s)	157, 746
BfaI	CTAG	2 cut(s)	368, 390
BfuAI	ACCTGC	1 cut(s)	289
Bme1390I	CCNGG	2 cut(s)	125, 903
Bme18I	GGWCC	3 cut(s)	120, 727, 878
BmgBI	CACGTC	1 cut(s)	630
BmgT120I	GGNCC	5 cut(s)	71, 72, 120, 727, 878
BmiI	GGNNCC	5 cut(s)	7, 40, 73, 122, 993
BmrFI	CCNGG	2 cut(s)	125, 903
BmsI	GCATC	1 cut(s)	547
BpuEI	CTTGAG	2 cut(s)	147, 221
BsaI	GGTCTC	1 cut(s)	157
BsaJI	CCNNGG	4 cut(s)	123, 293, 902, 995
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 932
Bse1I	ACTGG	2 cut(s)	782, 1080
BseBI	CCWGG	2 cut(s)	125, 903
BseDI	CCNNGG	4 cut(s)	123, 293, 902, 995
BseLI	CCNNNNNNNGG	2 cut(s)	15, 932
BseMII	CTCAG	2 cut(s)	423, 780
BseNI	ACTGG	2 cut(s)	782, 1080
BseSI	GKGCMC	2 cut(s)	41, 75
BshFI	GGCC	1 cut(s)	73
BshNI	GGYRCC	2 cut(s)	5, 38
BsiSI	CCGG	1 cut(s)	730
BslFI	GGGAC	1 cut(s)	949
BslI	CCNNNNNNNGG	2 cut(s)	15, 932
BsmAI	GTCTC	2 cut(s)	157, 746
BsmBI	CGTCTC	1 cut(s)	746
BsmFI	GGGAC	1 cut(s)	949
BsmI	GAATGC	1 cut(s)	359
BsnI	GGCC	1 cut(s)	73
Bso31I	GGTCTC	1 cut(s)	157
Bsp120I	GGGCCC	1 cut(s)	71
Bsp1286I	GDGCHC	2 cut(s)	41, 75
Bsp143I	GATC	9 cut(s)	166, 360, 418, 476, 498, 832, 850, 922, 991
Bsp19I	CCATGG	1 cut(s)	293
BspACI	CCGC	1 cut(s)	536
BspANI	GGCC	1 cut(s)	73
BspCNI	CTCAG	2 cut(s)	424, 781
BspHI	TCATGA	1 cut(s)	169
BspLI	GGNNCC	5 cut(s)	7, 40, 73, 122, 993
BspMI	ACCTGC	1 cut(s)	289
BspPI	GGATC	5 cut(s)	426, 506, 917, 986, 999
BspT107I	GGYRCC	2 cut(s)	5, 38
BspTNI	GGTCTC	1 cut(s)	157
BsrI	ACTGG	2 cut(s)	782, 1080
BssECI	CCNNGG	4 cut(s)	123, 293, 902, 995
BssMI	GATC	9 cut(s)	166, 360, 418, 476, 498, 832, 850, 922, 991
BssT1I	CCWWGG	1 cut(s)	293
Bst2UI	CCWGG	2 cut(s)	125, 903
Bst4CI	ACNGT	1 cut(s)	949
Bst6I	CTCTTC	1 cut(s)	1050
BstC8I	GCNNGC	1 cut(s)	735
BstDEI	CTNAG	2 cut(s)	432, 789
BstDSI	CCRYGG	2 cut(s)	293, 995
BstHHI	GCGC	1 cut(s)	587
BstKTI	GATC	9 cut(s)	169, 363, 421, 479, 501, 835, 853, 925, 994
BstMAI	GTCTC	2 cut(s)	157, 746
BstMBI	GATC	9 cut(s)	166, 360, 418, 476, 498, 832, 850, 922, 991
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	2 cut(s)	125, 903
BstNSI	RCATGY	1 cut(s)	486
BstSCI	CCNGG	2 cut(s)	123, 901
BstSLI	GKGCMC	2 cut(s)	41, 75
BstX2I	RGATCY	3 cut(s)	498, 922, 991
BstXI	CCANNNNNNTGG	2 cut(s)	57, 104
BstYI	RGATCY	3 cut(s)	498, 922, 991
BsuRI	GGCC	1 cut(s)	73
BtgI	CCRYGG	2 cut(s)	293, 995
BtrI	CACGTC	1 cut(s)	630
BtsIMutI	CAGTG	1 cut(s)	1087
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	735
CciI	TCATGA	1 cut(s)	169
CfoI	GCGC	1 cut(s)	587
Cfr13I	GGNCC	5 cut(s)	71, 72, 120, 727, 878
CviAII	CATG	3 cut(s)	170, 294, 483
DdeI	CTNAG	2 cut(s)	432, 789
DpnI	GATC	9 cut(s)	168, 362, 420, 478, 500, 834, 852, 924, 993
DpnII	GATC	9 cut(s)	166, 360, 418, 476, 498, 832, 850, 922, 991
Eam1104I	CTCTTC	1 cut(s)	1050
EarI	CTCTTC	1 cut(s)	1050
Eco130I	CCWWGG	1 cut(s)	293
Eco24I	GRGCYC	1 cut(s)	75
Eco31I	GGTCTC	1 cut(s)	157
Eco47I	GGWCC	3 cut(s)	120, 727, 878
Eco57I	CTGAAG	2 cut(s)	204, 313
EcoO109I	RGGNCCY	2 cut(s)	120, 878
EcoRII	CCWGG	2 cut(s)	123, 901
EcoT14I	CCWWGG	1 cut(s)	293
EcoT38I	GRGCYC	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	293
Esp3I	CGTCTC	1 cut(s)	746
FaeI	CATG	3 cut(s)	173, 297, 486
FaqI	GGGAC	1 cut(s)	949
FatI	CATG	3 cut(s)	169, 293, 482
FriOI	GRGCYC	1 cut(s)	75
FspBI	CTAG	2 cut(s)	368, 390
GlaI	GCGC	1 cut(s)	586
HaeIII	GGCC	1 cut(s)	73
HapII	CCGG	1 cut(s)	730
HhaI	GCGC	1 cut(s)	587
Hin1II	CATG	3 cut(s)	173, 297, 486
Hin6I	GCGC	1 cut(s)	585
HinP1I	GCGC	1 cut(s)	585
HincII	GTYRAC	2 cut(s)	304, 386
HindII	GTYRAC	2 cut(s)	304, 386
HinfI	GANTC	4 cut(s)	179, 375, 659, 757
HpaII	CCGG	1 cut(s)	730
HphI	GGTGA	5 cut(s)	353, 498, 613, 784, 995
Hpy166II	GTNNAC	4 cut(s)	304, 386, 533, 775
Hpy188I	TCNGA	2 cut(s)	664, 805
Hpy188III	TCNNGA	6 cut(s)	111, 164, 170, 200, 701, 743
Hpy8I	GTNNAC	4 cut(s)	304, 386, 533, 775
Hpy99I	CGWCG	1 cut(s)	634
HpyAV	CCTTC	5 cut(s)	199, 228, 421, 1045, 1063
HpyCH4III	ACNGT	1 cut(s)	949
HpyCH4IV	ACGT	3 cut(s)	629, 766, 1011
HpyCH4V	TGCA	1 cut(s)	688
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	2 cut(s)	432, 789
HpySE526I	ACGT	3 cut(s)	629, 766, 1011
Hsp92II	CATG	3 cut(s)	173, 297, 486
HspAI	GCGC	1 cut(s)	585
Kzo9I	GATC	9 cut(s)	166, 360, 418, 476, 498, 832, 850, 922, 991
LweI	GCATC	1 cut(s)	547
MaeI	CTAG	2 cut(s)	368, 390
MaeII	ACGT	3 cut(s)	629, 766, 1011
MaeIII	GTNAC	2 cut(s)	213, 406
MalI	GATC	9 cut(s)	168, 362, 420, 478, 500, 834, 852, 924, 993
MboI	GATC	9 cut(s)	166, 360, 418, 476, 498, 832, 850, 922, 991
MboII	GAAGA	7 cut(s)	332, 362, 458, 563, 566, 932, 1067
MfeI	CAATTG	4 cut(s)	422, 588, 868, 967
MflI	RGATCY	3 cut(s)	498, 922, 991
MhlI	GDGCHC	2 cut(s)	41, 75
MluCI	AATT	9 cut(s)	98, 193, 422, 557, 588, 868, 967, 1023, 1087
MmeI	TCCRAC	1 cut(s)	783
MseI	TTAA	3 cut(s)	236, 675, 1026
MslI	CAYNNNNRTG	1 cut(s)	174
MspI	CCGG	1 cut(s)	730
MspR9I	CCNGG	2 cut(s)	125, 903
MunI	CAATTG	4 cut(s)	422, 588, 868, 967
Mva1269I	GAATGC	1 cut(s)	359
MvaI	CCWGG	2 cut(s)	125, 903
MwoI	GCNNNNNNNGC	1 cut(s)	254
NcoI	CCATGG	1 cut(s)	293
NdeII	GATC	9 cut(s)	166, 360, 418, 476, 498, 832, 850, 922, 991
NlaIII	CATG	3 cut(s)	173, 297, 486
NlaIV	GGNNCC	5 cut(s)	7, 40, 73, 122, 993
NspI	RCATGY	1 cut(s)	486
PagI	TCATGA	1 cut(s)	169
PctI	GAATGC	1 cut(s)	359
PfeI	GAWTC	4 cut(s)	179, 375, 659, 757
PpuMI	RGGWCCY	2 cut(s)	120, 878
Psp1406I	AACGTT	1 cut(s)	1011
Psp5II	RGGWCCY	2 cut(s)	120, 878
Psp6I	CCWGG	2 cut(s)	123, 901
PspGI	CCWGG	2 cut(s)	123, 901
PspN4I	GGNNCC	5 cut(s)	7, 40, 73, 122, 993
PspOMI	GGGCCC	1 cut(s)	71
PspPI	GGNCC	5 cut(s)	71, 72, 120, 727, 878
PspPPI	RGGWCCY	2 cut(s)	120, 878
PsuI	RGATCY	3 cut(s)	498, 922, 991
RseI	CAYNNNNRTG	1 cut(s)	174
SaqAI	TTAA	3 cut(s)	236, 675, 1026
Sau3AI	GATC	9 cut(s)	166, 360, 418, 476, 498, 832, 850, 922, 991
Sau96I	GGNCC	5 cut(s)	71, 72, 120, 727, 878
ScrFI	CCNGG	2 cut(s)	125, 903
SduI	GDGCHC	2 cut(s)	41, 75
SfaNI	GCATC	1 cut(s)	547
SinI	GGWCC	3 cut(s)	120, 727, 878
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	2 cut(s)	162, 200
SmoI	CTYRAG	2 cut(s)	162, 200
Sse9I	AATT	9 cut(s)	98, 193, 422, 557, 588, 868, 967, 1023, 1087
SsiI	CCGC	1 cut(s)	536
SspI	AATATT	1 cut(s)	240
SspMI	CTAG	2 cut(s)	368, 390
StyD4I	CCNGG	2 cut(s)	123, 901
StyI	CCWWGG	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	949
TaiI	ACGT	3 cut(s)	632, 769, 1014
TaqI	TCGA	5 cut(s)	141, 494, 632, 744, 823
TasI	AATT	9 cut(s)	98, 193, 422, 557, 588, 868, 967, 1023, 1087
TfiI	GAWTC	4 cut(s)	179, 375, 659, 757
Tru1I	TTAA	3 cut(s)	236, 675, 1026
Tru9I	TTAA	3 cut(s)	236, 675, 1026
TscAI	CASTG	1 cut(s)	1087
TspDTI	ATGAA	3 cut(s)	627, 637, 1033
TspGWI	ACGGA	2 cut(s)	431, 984
TspRI	CASTG	1 cut(s)	1087
VpaK11BI	GGWCC	3 cut(s)	120, 727, 878
XapI	RAATTY	1 cut(s)	557
XceI	RCATGY	1 cut(s)	486
XcmI	CCANNNNNNNNNTGG	1 cut(s)	54
XspI	CTAG	2 cut(s)	368, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.