Rorug02G0155900

Heterogeneous nuclear ribonucleoprotein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006379
Physical Location & Seq
Forward (+)
13903645 .. 13905162
1518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0155900.1

Sequence Viewer

Length: 489 bp
ATGGGTTTTGCTGAGTTCATGGGGTTTGAAGGAGGAGGAGTTGGATCCAGTGGAGCTCGTGATAGCTTTCAATGGGGTGGAACCATCTTTGCCTTAATTTTGCTAATCTTGAACCGAACAGGGCGCAGATCAGGCATGCAGAGTAACCTTCTTGTAATGTATTTGTTTACAAGCTTCCCGACAGTGTTGTTTAAAATTCTGAGGGGACAGTTCGGCTATTGGGTTTCATTTCTTGCTGTTTCTGCAAACCTCTTCTTTCCGCAAACTTTTCCAGTTTCTCGTTTTCTCCTATTTGTGGTCACACCTACTTGGGTGGCTAATGGACTGCGTGATGGTATTGTGGGTGGCATCTTTTGTCTAATTATTGGAGTTCTAGTTGTCATAACAGCGATTCAAGGAATTGGAGCAAAGAATGTATTCTTTGGGGACTTATACCCCATGCTGGGTCAGATGCTCAAAGAAGCAGCCTGTAGAGAACGCCTATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
RRM_1

Protein Analysis

162

Amino Acids

17.73

Weight (kDa)

9.77

Isoelectric Point (pI)

29.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WCOR413 PF05562 20 - 136 5.8e-28 Cold acclimation protein WCOR413
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 260
AclWI GGATC 2 cut(s) 39, 52
AcsI RAATTY 1 cut(s) 195
AfiI CCNNNNNNNGG 3 cut(s) 295, 442, 443
AgsI TTSAA 4 cut(s) 29, 71, 112, 395
AluBI AGCT 3 cut(s) 56, 66, 174
AluI AGCT 3 cut(s) 56, 66, 174
Alw21I GWGCWC 1 cut(s) 58
AlwI GGATC 2 cut(s) 39, 52
ApeKI GCWGC 1 cut(s) 464
ApoI RAATTY 1 cut(s) 195
Asp700I GAANNNNTTC 1 cut(s) 416
AspLEI GCGC 1 cut(s) 126
BamHI GGATCC 1 cut(s) 44
BanII GRGCYC 1 cut(s) 58
BauI CACGAG 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 1 cut(s) 476
BccI CCATC 2 cut(s) 92, 326
BfaI CTAG 1 cut(s) 374
BfmI CTRYAG 1 cut(s) 469
BisI GCNGC 1 cut(s) 465
BlsI GCNGC 1 cut(s) 466
BmiI GGNNCC 2 cut(s) 46, 82
BmsI GCATC 2 cut(s) 357, 441
BsaXI ACNNNNNCTCC 4 cut(s) 24, 54, 360, 390
Bsc4I CCNNNNNNNGG 3 cut(s) 295, 442, 443
Bse1I ACTGG 2 cut(s) 48, 272
BseLI CCNNNNNNNGG 3 cut(s) 295, 442, 443
BseMII CTCAG 1 cut(s) 191
BseNI ACTGG 2 cut(s) 48, 272
BseRI GAGGAG 2 cut(s) 48, 51
BseXI GCAGC 1 cut(s) 476
BseYI CCCAGC 1 cut(s) 442
BsiHKAI GWGCWC 1 cut(s) 58
BslFI GGGAC 2 cut(s) 219, 440
BslI CCNNNNNNNGG 3 cut(s) 295, 442, 443
BsmFI GGGAC 2 cut(s) 219, 440
Bsp1286I GDGCHC 1 cut(s) 58
Bsp143I GATC 2 cut(s) 44, 128
BspACI CCGC 1 cut(s) 260
BspCNI CTCAG 2 cut(s) 4, 192
BspLI GGNNCC 2 cut(s) 46, 82
BspPI GGATC 2 cut(s) 39, 52
BsrI ACTGG 2 cut(s) 48, 272
BssMI GATC 2 cut(s) 44, 128
BssSI CACGAG 1 cut(s) 57
Bst2BI CACGAG 1 cut(s) 57
Bst4CI ACNGT 2 cut(s) 184, 210
Bst6I CTCTTC 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 137
BstDEI CTNAG 2 cut(s) 12, 200
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 2 cut(s) 47, 131
BstMBI GATC 2 cut(s) 44, 128
BstMWI GCNNNNNNNGC 2 cut(s) 132, 242
BstNSI RCATGY 1 cut(s) 139
BstSFI CTRYAG 1 cut(s) 469
BstV1I GCAGC 1 cut(s) 476
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BtsIMutI CAGTG 2 cut(s) 55, 189
Cac8I GCNNGC 1 cut(s) 137
CfoI GCGC 1 cut(s) 126
CviAII CATG 3 cut(s) 19, 136, 439
CviJI RGCY 6 cut(s) 56, 66, 174, 216, 317, 467
CviKI_1 RGCY 6 cut(s) 56, 66, 174, 216, 317, 467
DdeI CTNAG 2 cut(s) 12, 200
DpnI GATC 2 cut(s) 46, 130
DpnII GATC 2 cut(s) 44, 128
DraI TTTAAA 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Ecl136II GAGCTC 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 58
Eco53kI GAGCTC 1 cut(s) 56
EcoICRI GAGCTC 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 58
FaeI CATG 3 cut(s) 22, 139, 442
FaiI YATR 5 cut(s) 20, 137, 383, 433, 440
FaqI GGGAC 2 cut(s) 219, 440
FatI CATG 3 cut(s) 18, 135, 438
Fnu4HI GCNGC 1 cut(s) 465
FriOI GRGCYC 1 cut(s) 58
Fsp4HI GCNGC 1 cut(s) 465
FspBI CTAG 1 cut(s) 374
GlaI GCGC 1 cut(s) 125
GluI GCNGC 1 cut(s) 465
GsaI CCCAGC 1 cut(s) 446
HhaI GCGC 1 cut(s) 126
Hin1II CATG 3 cut(s) 22, 139, 442
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HindIII AAGCTT 1 cut(s) 172
HinfI GANTC 1 cut(s) 391
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 2 cut(s) 201, 450
Hpy188III TCNNGA 3 cut(s) 59, 109, 178
Hpy8I GTNNAC 1 cut(s) 168
HpyAV CCTTC 2 cut(s) 23, 158
HpyCH4III ACNGT 2 cut(s) 184, 210
HpyCH4V TGCA 2 cut(s) 139, 245
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 242
HpyF3I CTNAG 2 cut(s) 12, 200
Hsp92II CATG 3 cut(s) 22, 139, 442
HspAI GCGC 1 cut(s) 124
Kzo9I GATC 2 cut(s) 44, 128
LmnI GCTCC 2 cut(s) 53, 404
LpnPI CCDG 6 cut(s) 61, 105, 117, 285, 428, 481
Lsp1109I GCAGC 1 cut(s) 476
LweI GCATC 2 cut(s) 357, 441
MaeI CTAG 1 cut(s) 374
MaeIII GTNAC 2 cut(s) 143, 298
MalI GATC 2 cut(s) 46, 130
MboI GATC 2 cut(s) 44, 128
MboII GAAGA 1 cut(s) 244
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 1 cut(s) 58
MluCI AATT 4 cut(s) 96, 195, 360, 399
MmeI TCCRAC 1 cut(s) 22
MnlI CCTC 4 cut(s) 26, 29, 195, 260
MroXI GAANNNNTTC 1 cut(s) 416
MseI TTAA 2 cut(s) 95, 192
MwoI GCNNNNNNNGC 2 cut(s) 132, 242
NdeII GATC 2 cut(s) 44, 128
NlaIII CATG 3 cut(s) 22, 139, 442
NlaIV GGNNCC 2 cut(s) 46, 82
NmuCI GTSAC 1 cut(s) 298
NspI RCATGY 1 cut(s) 139
PaeI GCATGC 1 cut(s) 139
PdmI GAANNNNTTC 1 cut(s) 416
PfeI GAWTC 1 cut(s) 391
PkrI GCNGC 1 cut(s) 466
Psp124BI GAGCTC 1 cut(s) 58
PspFI CCCAGC 1 cut(s) 442
PspN4I GGNNCC 2 cut(s) 46, 82
PsuI RGATCY 1 cut(s) 44
SacI GAGCTC 1 cut(s) 58
SaqAI TTAA 2 cut(s) 95, 192
SatI GCNGC 1 cut(s) 465
Sau3AI GATC 2 cut(s) 44, 128
SduI GDGCHC 1 cut(s) 58
SetI ASST 6 cut(s) 58, 68, 150, 176, 252, 307
SfaNI GCATC 2 cut(s) 357, 441
SfcI CTRYAG 1 cut(s) 469
SphI GCATGC 1 cut(s) 139
Sse9I AATT 4 cut(s) 96, 195, 360, 399
SsiI CCGC 1 cut(s) 260
SspMI CTAG 1 cut(s) 374
SstI GAGCTC 1 cut(s) 58
TaaI ACNGT 2 cut(s) 184, 210
TasI AATT 4 cut(s) 96, 195, 360, 399
TfiI GAWTC 1 cut(s) 391
Tru1I TTAA 2 cut(s) 95, 192
Tru9I TTAA 2 cut(s) 95, 192
TscAI CASTG 2 cut(s) 55, 189
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 1 cut(s) 464
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 2 cut(s) 7, 216
TspRI CASTG 2 cut(s) 55, 189
XapI RAATTY 1 cut(s) 195
XceI RCATGY 1 cut(s) 139
XmnI GAANNNNTTC 1 cut(s) 416
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.