FvH4_1g02920

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013579
Physical Location & Seq
Forward (+)
1656510 .. 1657000
491 bp
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UTR
Exon/CDS
Intron
FvH4_1g02920.t1

Sequence Viewer

Length: 402 bp
ATGGTGAAGATCATGAATGTTATAGTTGCTGTTATAGCATCTGCAGCAATATTGTTACACAGAACAGAAGCCGAAGACTACACAGTTGGAGACGATTTGGGTTGGACTGTACCTCCGGATGGTGCCGTCGACACATATGAAGACTGGGCAGCCGAGCATACCCCCTTTGTTGTCAATGTTGATACTCTAACATTTCAATTTCAGATGGGACAACAAGATGTGGCATCTGTGAATAAGGTGGATTTCGACAATTGCTTTACCACAAATCCGCTATGGGTGTCGTCGGCTCCGACCAAAGTTGTATTTGATCGACCAGGCACATTTTACTTCGTCGGAACCTACAACGGCCACTGTGCCAAAGGCCAAAAGATGGCTGTTACATGGGTCAACTCCCAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

134

Amino Acids

14.68

Weight (kDa)

4.47

Isoelectric Point (pI)

19.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 35 - 122 4.6e-13 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013579)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02920 FvH4_1g02930 FvH4_1g02980
malus_domestica MD02G1029200.v1.1 MD15G1170700.v1.1
prunus_persica Prupe.7G245700_v2.0.a1
pyrus_communis pycom15g15210
rosa_chinensis RchiOBHm_Chr2g0088121
rosa_laevigata RLG00000015923 RLG00000035302
rosa_multiflora Rmu_sc0003275.1_g000046
rosa_roxburghii Rroxscaffold_2G00152950
rosa_rugosa Rorug01G0481300
rosa_samantha Rh2AG036000 Rh2BG034500 Rh2BG035200 Rh2CG036400
rosa_wichuraiana Rw2G002830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 122
AccB7I CCANNNNNTGG 1 cut(s) 370
AccI GTMKAC 1 cut(s) 129
AccIII TCCGGA 1 cut(s) 115
AciI CCGC 1 cut(s) 269
AcoI YGGCCR 1 cut(s) 346
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 2 cut(s) 119, 370
AgsI TTSAA 1 cut(s) 197
AjnI CCWGG 1 cut(s) 313
Alw26I GTCTC 1 cut(s) 84
Aor13HI TCCGGA 1 cut(s) 115
AoxI GGCC 2 cut(s) 346, 361
ApeKI GCWGC 2 cut(s) 44, 149
AsuHPI GGTGA 1 cut(s) 16
BanI GGYRCC 1 cut(s) 122
BbsI GAAGAC 2 cut(s) 81, 147
BbvI GCAGC 2 cut(s) 56, 161
BccI CCATC 3 cut(s) 113, 199, 364
BceAI ACGGC 2 cut(s) 110, 361
BciT130I CCWGG 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 42
BisI GCNGC 2 cut(s) 45, 150
BlsI GCNGC 2 cut(s) 46, 151
Bme1390I CCNGG 1 cut(s) 315
BmiI GGNNCC 3 cut(s) 124, 288, 337
BmrFI CCNGG 1 cut(s) 315
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 2 cut(s) 47, 233
BmuI ACTGGG 1 cut(s) 154
BpiI GAAGAC 2 cut(s) 81, 147
BsaWI WCCGGW 1 cut(s) 115
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 370
Bse1I ACTGG 1 cut(s) 149
BseAI TCCGGA 1 cut(s) 115
BseBI CCWGG 1 cut(s) 315
BseGI GGATG 1 cut(s) 124
BseLI CCNNNNNNNGG 2 cut(s) 119, 370
BseNI ACTGG 1 cut(s) 149
BseXI GCAGC 2 cut(s) 56, 161
BseYI CCCAGC 1 cut(s) 393
BshFI GGCC 2 cut(s) 348, 363
BshNI GGYRCC 1 cut(s) 122
BsiSI CCGG 1 cut(s) 116
BslFI GGGAC 1 cut(s) 222
BslI CCNNNNNNNGG 2 cut(s) 119, 370
BsmAI GTCTC 1 cut(s) 84
BsmBI CGTCTC 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 222
BsnI GGCC 2 cut(s) 348, 363
Bsp13I TCCGGA 1 cut(s) 115
Bsp143I GATC 2 cut(s) 9, 307
BspACI CCGC 1 cut(s) 269
BspANI GGCC 2 cut(s) 348, 363
BspEI TCCGGA 1 cut(s) 115
BspHI TCATGA 1 cut(s) 12
BspLI GGNNCC 3 cut(s) 124, 288, 337
BspMAI CTGCAG 1 cut(s) 46
BspT107I GGYRCC 1 cut(s) 122
BsrI ACTGG 1 cut(s) 149
BssMI GATC 2 cut(s) 9, 307
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 3 cut(s) 85, 109, 353
BstF5I GGATG 1 cut(s) 124
BstKTI GATC 2 cut(s) 12, 310
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 2 cut(s) 9, 307
BstMWI GCNNNNNNNGC 2 cut(s) 35, 44
BstNI CCWGG 1 cut(s) 315
BstSCI CCNGG 1 cut(s) 313
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 2 cut(s) 56, 161
BstV2I GAAGAC 2 cut(s) 81, 147
BsuRI GGCC 2 cut(s) 348, 363
BtsCI GGATG 1 cut(s) 124
BtsIMutI CAGTG 1 cut(s) 349
CciI TCATGA 1 cut(s) 12
Csp6I GTAC 1 cut(s) 110
CviAII CATG 3 cut(s) 13, 381, 399
CviJI RGCY 7 cut(s) 71, 152, 287, 348, 363, 374, 397
CviKI_1 RGCY 7 cut(s) 71, 152, 287, 348, 363, 374, 397
CviQI GTAC 1 cut(s) 110
DpnI GATC 2 cut(s) 11, 309
DpnII GATC 2 cut(s) 9, 307
EaeI YGGCCR 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 313
Esp3I CGTCTC 1 cut(s) 84
FaeI CATG 3 cut(s) 16, 384, 402
FaiI YATR 9 cut(s) 14, 23, 35, 136, 138, 159, 274, 382, 400
FaqI GGGAC 1 cut(s) 222
FatI CATG 3 cut(s) 12, 380, 398
FauNDI CATATG 1 cut(s) 136
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 2 cut(s) 45, 150
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 2 cut(s) 45, 150
GluI GCNGC 2 cut(s) 45, 150
GsaI CCCAGC 1 cut(s) 397
HaeIII GGCC 2 cut(s) 348, 363
HapII CCGG 1 cut(s) 116
Hin1II CATG 3 cut(s) 16, 384, 402
HincII GTYRAC 2 cut(s) 130, 388
HindII GTYRAC 2 cut(s) 130, 388
HpaII CCGG 1 cut(s) 116
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 130, 388
Hpy188I TCNGA 3 cut(s) 204, 291, 335
Hpy188III TCNNGA 2 cut(s) 13, 116
Hpy8I GTNNAC 2 cut(s) 130, 388
Hpy99I CGWCG 3 cut(s) 131, 286, 335
HpyCH4III ACNGT 3 cut(s) 85, 109, 353
HpyCH4V TGCA 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 44
Hsp92II CATG 3 cut(s) 16, 384, 402
Kpn2I TCCGGA 1 cut(s) 115
Kzo9I GATC 2 cut(s) 9, 307
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 4 cut(s) 129, 130, 300, 327
Lsp1109I GCAGC 2 cut(s) 56, 161
LweI GCATC 2 cut(s) 47, 233
MaeIII GTNAC 2 cut(s) 54, 376
MalI GATC 2 cut(s) 11, 309
MboI GATC 2 cut(s) 9, 307
MboII GAAGA 3 cut(s) 19, 86, 152
MfeI CAATTG 1 cut(s) 250
MluCI AATT 2 cut(s) 197, 250
MmeI TCCRAC 4 cut(s) 67, 83, 313, 314
MnlI CCTC 1 cut(s) 123
MroI TCCGGA 1 cut(s) 115
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 315
MunI CAATTG 1 cut(s) 250
MvaI CCWGG 1 cut(s) 315
MwoI GCNNNNNNNGC 2 cut(s) 35, 44
NdeI CATATG 1 cut(s) 136
NdeII GATC 2 cut(s) 9, 307
NlaIII CATG 3 cut(s) 16, 384, 402
NlaIV GGNNCC 3 cut(s) 124, 288, 337
NmeAIII GCCGAG 1 cut(s) 178
PagI TCATGA 1 cut(s) 12
PcsI WCGNNNNNNNCGW 1 cut(s) 287
PflMI CCANNNNNTGG 1 cut(s) 370
PkrI GCNGC 2 cut(s) 46, 151
Psp6I CCWGG 1 cut(s) 313
PspFI CCCAGC 1 cut(s) 393
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 3 cut(s) 124, 288, 337
PstI CTGCAG 1 cut(s) 46
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
SalI GTCGAC 1 cut(s) 128
SatI GCNGC 2 cut(s) 45, 150
Sau3AI GATC 2 cut(s) 9, 307
ScrFI CCNGG 1 cut(s) 315
SetI ASST 3 cut(s) 115, 240, 341
SfaNI GCATC 2 cut(s) 47, 233
SfcI CTRYAG 1 cut(s) 42
SgeI CNNG 8 cut(s) 25, 128, 157, 166, 227, 326, 327, 393
Sse9I AATT 2 cut(s) 197, 250
SsiI CCGC 1 cut(s) 269
SspI AATATT 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 313
TaaI ACNGT 3 cut(s) 85, 109, 353
TaqI TCGA 3 cut(s) 129, 246, 310
TasI AATT 2 cut(s) 197, 250
TscAI CASTG 1 cut(s) 356
TseI GCWGC 2 cut(s) 44, 149
TspDTI ATGAA 2 cut(s) 29, 153
TspRI CASTG 1 cut(s) 356
Van91I CCANNNNNTGG 1 cut(s) 370
XmiI GTMKAC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.