Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0013579

Physical Location & Seq

Genomic Coordinates Reverse (-)

2438819 .. 2439779

Gene Structure 961 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG035200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGGGCCTAAGAAACTTAGTGCGACTACATCTGTGGTTGCAATTGTTATAGCTTTAGCAGCTGTGCTACAAACCGCAGAAGCTGAAACGCACAAAGTGAGTTGGAATAATACAGTTGGTGCCAACTACTATACTTCTTGGGCTGCCAATCAGACCTTCAAAGTTGGCGACCTTCTAGTGTTCAATTTCACTACTGGACGACACGACGTAGCTGAAGTTGCAAAGGATGCTTACGAAAAGTGCAACGTCACTGACCTCATCAGCAACCCTAAGTACGACGGACCAGCCAACTACACCCTCAATGCCACCGGCGATCACTACTTTATCTGCCTCTTCCCTGGACACTGTGACCAAGGACAGAAGTTGGCAATCACCGTAACAACTAGCCATTCCGGCTCTGCGCCTACGCCTGCTCCTGCCCCAAGTAGTACTGGTACTCCTCCTTCTGGAGCTAAATCTCCTCCTAGTTCAACATCGCCACCACCAAGCACGTCAAGCACTACAGCACCACCACCACCAAAGGGCTCGACAGGCAGCTCTTCTCATGTTGTTACCATTTCTACTGTTTTCATGTCCATTGCCGTAGCTCTTTTCTGCCTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0015690 GO:0016020 GO:0019222 GO:0030001 GO:0031224 GO:0031225 GO:0031226 GO:0031323 GO:0031326 GO:0033554 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070417 GO:0071944 GO:0072512 GO:1900376 GO:1901141 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

201

Amino Acids

20.81

Weight (kDa)

6.99

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	35 - 120	9e-23	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013579)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02920 FvH4_1g02930 FvH4_1g02980
malus_domestica	MD02G1029200.v1.1 MD15G1170700.v1.1
prunus_persica	Prupe.7G245700_v2.0.a1
pyrus_communis	pycom15g15210
rosa_chinensis	RchiOBHm_Chr2g0088121
rosa_laevigata	RLG00000015923 RLG00000035302
rosa_multiflora	Rmu_sc0003275.1_g000046
rosa_roxburghii	Rroxscaffold_2G00152950
rosa_rugosa	Rorug01G0481300
rosa_samantha	Rh2AG036000 Rh2BG034500 Rh2BG035200 Rh2CG036400
rosa_wichuraiana	Rw2G002830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AciI	CCGC	1 cut(s)	75
AcuI	CTGAAG	1 cut(s)	234
AdeI	CACNNNGTG	1 cut(s)	97
AfaI	GTAC	3 cut(s)	275, 430, 436
AfiI	CCNNNNNNNGG	2 cut(s)	446, 521
AgsI	TTSAA	3 cut(s)	160, 184, 471
AjiI	CACGTC	1 cut(s)	492
AjnI	CCWGG	1 cut(s)	337
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	7 cut(s)	53, 62, 83, 212, 452, 537, 587
AluI	AGCT	7 cut(s)	53, 62, 83, 212, 452, 537, 587
AlwNI	CAGNNNCTG	1 cut(s)	83
AoxI	GGCC	1 cut(s)	5
ApeKI	GCWGC	3 cut(s)	59, 143, 534
AspLEI	GCGC	1 cut(s)	403
AspS9I	GGNCC	2 cut(s)	5, 281
AsuHPI	GGTGA	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	527
BarI	GAAGNNNNNNTAC	2 cut(s)	427, 459
BbvI	GCAGC	3 cut(s)	71, 130, 546
BceAI	ACGGC	1 cut(s)	566
BciT130I	CCWGG	1 cut(s)	339
BfaI	CTAG	4 cut(s)	176, 384, 465, 604
BfmI	CTRYAG	1 cut(s)	501
BglI	GCCNNNNNGGC	1 cut(s)	393
BisI	GCNGC	3 cut(s)	60, 144, 535
BlsI	GCNGC	3 cut(s)	61, 145, 536
BmcAI	AGTACT	1 cut(s)	430
Bme1390I	CCNGG	1 cut(s)	339
Bme18I	GGWCC	1 cut(s)	281
BmgBI	CACGTC	1 cut(s)	492
BmgT120I	GGNCC	2 cut(s)	5, 281
BmiI	GGNNCC	2 cut(s)	6, 121
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	1 cut(s)	217
BpmI	CTGGAG	1 cut(s)	468
BsaJI	CCNNGG	2 cut(s)	337, 352
BsaXI	ACNNNNNCTCC	4 cut(s)	397, 421, 427, 451
Bsc4I	CCNNNNNNNGG	2 cut(s)	446, 521
Bse118I	RCCGGY	1 cut(s)	308
Bse1I	ACTGG	2 cut(s)	199, 436
Bse3DI	GCAATG	1 cut(s)	576
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	2 cut(s)	337, 352
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	2 cut(s)	446, 521
BseMI	GCAATG	1 cut(s)	576
BseNI	ACTGG	2 cut(s)	199, 436
BseRI	GAGGAG	2 cut(s)	429, 450
BseXI	GCAGC	3 cut(s)	71, 130, 546
BshFI	GGCC	1 cut(s)	7
BshNI	GGYRCC	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	309, 393
BslI	CCNNNNNNNGG	2 cut(s)	446, 521
BsnI	GGCC	1 cut(s)	7
Bsp1286I	GDGCHC	1 cut(s)	527
Bsp143I	GATC	1 cut(s)	313
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	1 cut(s)	7
BspLI	GGNNCC	2 cut(s)	6, 121
BspQI	GCTCTTC	1 cut(s)	544
BspT107I	GGYRCC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	576
BsrFI	RCCGGY	1 cut(s)	308
BsrI	ACTGG	2 cut(s)	199, 436
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	337, 352
BssMI	GATC	1 cut(s)	313
BssT1I	CCWWGG	1 cut(s)	352
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	4 cut(s)	115, 347, 376, 565
Bst6I	CTCTTC	2 cut(s)	338, 544
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	3 cut(s)	9, 17, 270
BstF5I	GGATG	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	403
BstKTI	GATC	1 cut(s)	316
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 218, 227, 393, 495, 531
BstNI	CCWGG	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	337
BstSFI	CTRYAG	1 cut(s)	501
BstV1I	GCAGC	3 cut(s)	71, 130, 546
BsuRI	GGCC	1 cut(s)	7
BtgZI	GCGATG	1 cut(s)	459
BtrI	CACGTC	1 cut(s)	492
BtsCI	GGATG	1 cut(s)	232
BtsIMutI	CAGTG	2 cut(s)	249, 343
Cac8I	GCNNGC	1 cut(s)	411
CaiI	CAGNNNCTG	1 cut(s)	83
CfoI	GCGC	1 cut(s)	403
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	2 cut(s)	5, 281
Csp6I	GTAC	3 cut(s)	274, 429, 435
CviAII	CATG	2 cut(s)	545, 571
CviQI	GTAC	3 cut(s)	274, 429, 435
DdeI	CTNAG	3 cut(s)	9, 17, 270
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
DraIII	CACNNNGTG	1 cut(s)	97
Eam1104I	CTCTTC	2 cut(s)	338, 544
EarI	CTCTTC	2 cut(s)	338, 544
Eco130I	CCWWGG	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	527
Eco47I	GGWCC	1 cut(s)	281
Eco57I	CTGAAG	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	352
EcoT38I	GRGCYC	1 cut(s)	527
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	2 cut(s)	548, 574
FaiI	YATR	4 cut(s)	50, 132, 546, 572
FatI	CATG	2 cut(s)	544, 570
Fnu4HI	GCNGC	3 cut(s)	60, 144, 535
FokI	GGATG	1 cut(s)	239
FriOI	GRGCYC	1 cut(s)	527
Fsp4HI	GCNGC	3 cut(s)	60, 144, 535
FspBI	CTAG	4 cut(s)	176, 384, 465, 604
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	3 cut(s)	60, 144, 535
GsuI	CTGGAG	1 cut(s)	468
HaeIII	GGCC	1 cut(s)	7
HapII	CCGG	2 cut(s)	309, 393
HhaI	GCGC	1 cut(s)	403
Hin1II	CATG	2 cut(s)	548, 574
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HpaII	CCGG	2 cut(s)	309, 393
HphI	GGTGA	1 cut(s)	364
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	1 cut(s)	447
Hpy99I	CGWCG	2 cut(s)	209, 281
HpyAV	CCTTC	3 cut(s)	166, 182, 453
HpyCH4III	ACNGT	4 cut(s)	115, 347, 376, 565
HpyCH4IV	ACGT	3 cut(s)	207, 246, 491
HpyCH4V	TGCA	3 cut(s)	41, 221, 243
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 218, 227, 393, 495, 531
HpyF3I	CTNAG	3 cut(s)	9, 17, 270
HpySE526I	ACGT	3 cut(s)	207, 246, 491
Hsp92II	CATG	2 cut(s)	548, 574
HspAI	GCGC	1 cut(s)	401
Kzo9I	GATC	1 cut(s)	313
LguI	GCTCTTC	1 cut(s)	544
LmnI	GCTCC	2 cut(s)	418, 449
Lsp1109I	GCAGC	3 cut(s)	71, 130, 546
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	4 cut(s)	176, 384, 465, 604
MaeII	ACGT	3 cut(s)	207, 246, 491
MaeIII	GTNAC	4 cut(s)	247, 347, 376, 550
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MboII	GAAGA	3 cut(s)	325, 531, 592
MfeI	CAATTG	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	527
MluCI	AATT	2 cut(s)	42, 184
MmeI	TCCRAC	1 cut(s)	83
MnlI	CCTC	5 cut(s)	266, 308, 341, 450, 471
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	2 cut(s)	309, 393
MspR9I	CCNGG	1 cut(s)	339
MunI	CAATTG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	6 cut(s)	59, 218, 227, 393, 495, 531
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	2 cut(s)	548, 574
NlaIV	GGNNCC	2 cut(s)	6, 121
NmuCI	GTSAC	2 cut(s)	247, 347
PciSI	GCTCTTC	1 cut(s)	544
PkrI	GCNGC	3 cut(s)	61, 145, 536
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	2 cut(s)	6, 121
PspPI	GGNCC	2 cut(s)	5, 281
PstNI	CAGNNNCTG	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	3 cut(s)	275, 430, 436
RsaNI	GTAC	3 cut(s)	274, 429, 435
SapI	GCTCTTC	1 cut(s)	544
SatI	GCNGC	3 cut(s)	60, 144, 535
Sau3AI	GATC	1 cut(s)	313
Sau96I	GGNCC	2 cut(s)	5, 281
ScaI	AGTACT	1 cut(s)	430
ScrFI	CCNGG	1 cut(s)	339
SduI	GDGCHC	1 cut(s)	527
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	1 cut(s)	501
SgrAI	CRCCGGYG	1 cut(s)	308
SinI	GGWCC	1 cut(s)	281
Sse9I	AATT	2 cut(s)	42, 184
SsiI	CCGC	1 cut(s)	75
SspMI	CTAG	4 cut(s)	176, 384, 465, 604
StyD4I	CCNGG	1 cut(s)	337
StyI	CCWWGG	1 cut(s)	352
TaaI	ACNGT	4 cut(s)	115, 347, 376, 565
TaiI	ACGT	3 cut(s)	210, 249, 494
TaqI	TCGA	1 cut(s)	527
TasI	AATT	2 cut(s)	42, 184
TatI	WGTACW	1 cut(s)	428
TscAI	CASTG	2 cut(s)	256, 350
TseFI	GTSAC	2 cut(s)	247, 347
TseI	GCWGC	3 cut(s)	59, 143, 534
Tsp45I	GTSAC	2 cut(s)	247, 347
TspDTI	ATGAA	1 cut(s)	559
TspGWI	ACGGA	1 cut(s)	294
TspRI	CASTG	2 cut(s)	256, 350
VpaK11BI	GGWCC	1 cut(s)	281
XspI	CTAG	4 cut(s)	176, 384, 465, 604
ZrmI	AGTACT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.