Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0013579

Physical Location & Seq

Genomic Coordinates Reverse (-)

2260915 .. 2261942

Gene Structure 1028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1029200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCGCCTAAAATGCTTGGTTTTGTGACAGCTTTTGTTGTAATAACAGCAGCAGCACTGATCACACAAAGAGCAGAAGCTGAAACACACACAGTTGGTGATGCTACTGGTTGGACTAACATTGTTGATTCCGACACTTATTCTTCCTGGGCTGCCAAACATACCTTCAAAGTTGGCGACACCCTAGTGTTCCAGTTCACAACTGGACGACATGATGTAGCCACACTTACAAAGACAGCTTATGATGAATGCAACAATACCGATATTCTGGGCGTACTAAACCAAGGACCAGCCAGTTACAGCCTCAACAAAACCGGCGATTACTACTTCATCTGCTCCTTCCCAGGCCACTGTAACGAGGGTCAGAAGTTGAGCATCAAAGTGACAGCTAGCCCTGCTGCCCCTCCTCCTGACAGTGAAACTCCTGCATCGCCGCCAACCACAATGGCTCCTCCTCCTTCTGACACTAAGACTCCTTTGTCGCCACCAACCACAACGGCACCTCCTCCGTCAGCAGCCTCTTCCCTAGCTTCTACTTTTTCTACTGTTTTTATGTCCATTACCATTGCTCTTTTCTGCCTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0015690 GO:0016020 GO:0019222 GO:0030001 GO:0031224 GO:0031225 GO:0031226 GO:0031323 GO:0031326 GO:0033554 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070417 GO:0071944 GO:0072512 GO:1900376 GO:1901141 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

196

Amino Acids

20.55

Weight (kDa)

5.16

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	38 - 122	4.4e-24	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013579)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02920 FvH4_1g02930 FvH4_1g02980
malus_domestica	MD02G1029200.v1.1 MD15G1170700.v1.1
prunus_persica	Prupe.7G245700_v2.0.a1
pyrus_communis	pycom15g15210
rosa_chinensis	RchiOBHm_Chr2g0088121
rosa_laevigata	RLG00000015923 RLG00000035302
rosa_multiflora	Rmu_sc0003275.1_g000046
rosa_roxburghii	Rroxscaffold_2G00152950
rosa_rugosa	Rorug01G0481300
rosa_samantha	Rh2AG036000 Rh2BG034500 Rh2BG035200 Rh2CG036400
rosa_wichuraiana	Rw2G002830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	478
AccB1I	GGYRCC	2 cut(s)	4, 499
AciI	CCGC	1 cut(s)	434
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	276
AgsI	TTSAA	1 cut(s)	169
AjnI	CCWGG	2 cut(s)	146, 343
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AleI	CACNNNNGTG	1 cut(s)	185
AluBI	AGCT	5 cut(s)	32, 80, 239, 389, 530
AluI	AGCT	5 cut(s)	32, 80, 239, 389, 530
AlwNI	CAGNNNCTG	1 cut(s)	80
AoxI	GGCC	1 cut(s)	346
ApeKI	GCWGC	5 cut(s)	50, 53, 152, 398, 515
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	110
AsuNHI	GCTAGC	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	287
BanI	GGYRCC	2 cut(s)	4, 499
BbvI	GCAGC	5 cut(s)	62, 65, 139, 385, 527
BceAI	ACGGC	1 cut(s)	513
BciT130I	CCWGG	2 cut(s)	148, 345
BclI	TGATCA	1 cut(s)	60
BfaI	CTAG	4 cut(s)	185, 390, 527, 586
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	6 cut(s)	51, 54, 153, 399, 434, 516
BlsI	GCNGC	6 cut(s)	52, 55, 154, 400, 435, 517
Bme1390I	CCNGG	2 cut(s)	148, 345
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	3 cut(s)	6, 450, 501
BmrFI	CCNGG	2 cut(s)	148, 345
BmsI	GCATC	3 cut(s)	91, 384, 437
BmtI	GCTAGC	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	147, 283, 343
BsaXI	ACNNNNNCTCC	6 cut(s)	433, 457, 463, 487, 487, 517
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	4 cut(s)	112, 193, 208, 294
Bse3DI	GCAATG	1 cut(s)	564
BseBI	CCWGG	2 cut(s)	148, 345
BseDI	CCNNGG	3 cut(s)	147, 283, 343
BseMI	GCAATG	1 cut(s)	564
BseNI	ACTGG	4 cut(s)	112, 193, 208, 294
BseRI	GAGGAG	4 cut(s)	396, 441, 444, 495
BseXI	GCAGC	5 cut(s)	62, 65, 139, 385, 527
BshFI	GGCC	1 cut(s)	348
BshNI	GGYRCC	2 cut(s)	4, 499
BsiSI	CCGG	1 cut(s)	315
BsmI	GAATGC	1 cut(s)	254
BsnI	GGCC	1 cut(s)	348
Bsp143I	GATC	1 cut(s)	60
BspACI	CCGC	1 cut(s)	434
BspANI	GGCC	1 cut(s)	348
BspLI	GGNNCC	3 cut(s)	6, 450, 501
BspOI	GCTAGC	1 cut(s)	393
BspT107I	GGYRCC	2 cut(s)	4, 499
BsrDI	GCAATG	1 cut(s)	564
BsrFI	RCCGGY	1 cut(s)	314
BsrI	ACTGG	4 cut(s)	112, 193, 208, 294
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	3 cut(s)	147, 283, 343
BssMI	GATC	1 cut(s)	60
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	283
Bst2UI	CCWGG	2 cut(s)	148, 345
Bst4CI	ACNGT	4 cut(s)	94, 353, 416, 547
Bst6I	CTCTTC	1 cut(s)	526
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	391
BstDEI	CTNAG	1 cut(s)	468
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 395
BstNI	CCWGG	2 cut(s)	148, 345
BstSCI	CCNGG	2 cut(s)	146, 343
BstV1I	GCAGC	5 cut(s)	62, 65, 139, 385, 527
BsuRI	GGCC	1 cut(s)	348
BtgZI	GCGATG	1 cut(s)	414
BtsIMutI	CAGTG	3 cut(s)	56, 349, 421
Cac8I	GCNNGC	1 cut(s)	391
CaiI	CAGNNNCTG	1 cut(s)	80
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	287
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	1 cut(s)	212
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	1 cut(s)	468
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
DrdI	GACNNNNNNGTC	1 cut(s)	478
DseDI	GACNNNNNNGTC	1 cut(s)	478
Eam1104I	CTCTTC	1 cut(s)	526
EarI	CTCTTC	1 cut(s)	526
Eco130I	CCWWGG	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	287
EcoRII	CCWGG	2 cut(s)	146, 343
EcoT14I	CCWWGG	1 cut(s)	283
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	1 cut(s)	215
FaiI	YATR	4 cut(s)	162, 213, 243, 554
FatI	CATG	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	60
Fnu4HI	GCNGC	6 cut(s)	51, 54, 153, 399, 434, 516
Fsp4HI	GCNGC	6 cut(s)	51, 54, 153, 399, 434, 516
FspBI	CTAG	4 cut(s)	185, 390, 527, 586
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	6 cut(s)	51, 54, 153, 399, 434, 516
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	348
HapII	CCGG	1 cut(s)	315
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	215
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	2 cut(s)	128, 472
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	3 cut(s)	133, 366, 463
Hpy188III	TCNNGA	1 cut(s)	410
Hpy8I	GTNNAC	1 cut(s)	198
HpyAV	CCTTC	3 cut(s)	175, 349, 468
HpyCH4III	ACNGT	4 cut(s)	94, 353, 416, 547
HpyCH4V	TGCA	2 cut(s)	252, 428
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 395
HpyF3I	CTNAG	1 cut(s)	468
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	215
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	60
Kzo9I	GATC	1 cut(s)	60
LmnI	GCTCC	2 cut(s)	341, 454
Lsp1109I	GCAGC	5 cut(s)	62, 65, 139, 385, 527
LweI	GCATC	3 cut(s)	91, 384, 437
MaeI	CTAG	4 cut(s)	185, 390, 527, 586
MaeIII	GTNAC	4 cut(s)	25, 296, 353, 382
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	3 cut(s)	135, 513, 574
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	466
MmeI	TCCRAC	2 cut(s)	92, 156
MnlI	CCTC	9 cut(s)	314, 352, 414, 417, 462, 465, 513, 516, 529
MslI	CAYNNNNRTG	2 cut(s)	185, 380
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	2 cut(s)	148, 345
Mva1269I	GAATGC	1 cut(s)	254
MvaI	CCWGG	2 cut(s)	148, 345
MwoI	GCNNNNNNNGC	2 cut(s)	13, 395
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	1 cut(s)	60
NheI	GCTAGC	1 cut(s)	389
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	3 cut(s)	6, 450, 501
NmuCI	GTSAC	2 cut(s)	25, 382
OliI	CACNNNNGTG	1 cut(s)	185
PctI	GAATGC	1 cut(s)	254
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	6 cut(s)	52, 55, 154, 400, 435, 517
PleI	GAGTC	1 cut(s)	466
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	466
Psp6I	CCWGG	2 cut(s)	146, 343
PspGI	CCWGG	2 cut(s)	146, 343
PspN4I	GGNNCC	3 cut(s)	6, 450, 501
PspPI	GGNCC	1 cut(s)	287
PstNI	CAGNNNCTG	1 cut(s)	80
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
RseI	CAYNNNNRTG	2 cut(s)	185, 380
SatI	GCNGC	6 cut(s)	51, 54, 153, 399, 434, 516
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	1 cut(s)	466
ScrFI	CCNGG	2 cut(s)	148, 345
SetI	ASST	7 cut(s)	34, 82, 167, 241, 391, 505, 532
SfaNI	GCATC	3 cut(s)	91, 384, 437
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	1 cut(s)	287
SmiMI	CAYNNNNRTG	2 cut(s)	185, 380
SsiI	CCGC	1 cut(s)	434
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	4 cut(s)	185, 390, 527, 586
StyD4I	CCNGG	2 cut(s)	146, 343
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	4 cut(s)	94, 353, 416, 547
TauI	GCSGC	1 cut(s)	436
TfiI	GAWTC	1 cut(s)	128
TscAI	CASTG	3 cut(s)	63, 356, 421
TseFI	GTSAC	2 cut(s)	25, 382
TseI	GCWGC	5 cut(s)	50, 53, 152, 398, 515
Tsp45I	GTSAC	2 cut(s)	25, 382
TspDTI	ATGAA	2 cut(s)	261, 319
TspGWI	ACGGA	1 cut(s)	498
TspRI	CASTG	3 cut(s)	63, 356, 421
VpaK11BI	GGWCC	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
XspI	CTAG	4 cut(s)	185, 390, 527, 586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.