Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0013579

Physical Location & Seq

Genomic Coordinates Forward (+)

20938414 .. 20939423

Gene Structure 1010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G245700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCGTCTAAACTAGTTAGTCATAATGTGAGAGCTGCTGTTGTTGTAATTGTTATAGCAGCAGCAGCGGCATTGATCATAGAAAGAGCAGAAGCTGAAACACACACCGTAGGCGGCGCTTCTGGCTGGACCAATACTCTTGCTCCCGAATTTTATACTTCCTGGGCTGCCAATCACACCTTCAAAGTTGGCGACATTCTAGTGTTCGAATTCACTACCGGAGGACATGACGTAGCGAGACTTGGAAAGGAAGCTTTTGATGCGTGCAACAACACCGATCTGCTGAGCCCACCTGAAAACCAAGGACCCGCCAAATACAGCCTCAATCAAACTGGCGATTACTATTTCATCTGTGCTTTCCCTGCTCACTGTAGCCAGGGTCAAAAGTTAAGCATCAAAGTCATAGCCACTGGCCCTTCTGCCCCTGCCCCTGCTCCTCATTCTGAAGCCCCCACAACTCCTACTGCTCCTGCTCCTAATTCTGAACCCCCCAAAACTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTTCTCAAGCCGGGACTCCTCCTTCTGAGACCACAACTCCTTCGTCGCCACCAACTAGGGCAGTCACAACAGCACCTCCTCCGTCCTCAGCCTCGTCTCTGGCTTCTGCTATTTCTACTATTTCTACTATTTTCATGTCCATTGCCATTGCTCTTTTCTACCTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0015690 GO:0016020 GO:0019222 GO:0030001 GO:0031224 GO:0031225 GO:0031226 GO:0031323 GO:0031326 GO:0033554 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070417 GO:0071944 GO:0072512 GO:1900376 GO:1901141 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

232

Amino Acids

23.79

Weight (kDa)

5.82

Isoelectric Point (pI)

58.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013579)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02920 FvH4_1g02930 FvH4_1g02980
malus_domestica	MD02G1029200.v1.1 MD15G1170700.v1.1
prunus_persica	Prupe.7G245700_v2.0.a1
pyrus_communis	pycom15g15210
rosa_chinensis	RchiOBHm_Chr2g0088121
rosa_laevigata	RLG00000015923 RLG00000035302
rosa_multiflora	Rmu_sc0003275.1_g000046
rosa_roxburghii	Rroxscaffold_2G00152950
rosa_rugosa	Rorug01G0481300
rosa_samantha	Rh2AG036000 Rh2BG034500 Rh2BG035200 Rh2CG036400
rosa_wichuraiana	Rw2G002830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	68, 114, 309
AcsI	RAATTY	2 cut(s)	149, 209
AcuI	CTGAAG	1 cut(s)	465
AcyI	GRCGYC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	184
AhlI	ACTAGT	1 cut(s)	13
AjnI	CCWGG	2 cut(s)	161, 375
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	3 cut(s)	35, 95, 254
AluI	AGCT	3 cut(s)	35, 95, 254
Alw26I	GTCTC	3 cut(s)	232, 548, 627
AlwNI	CAGNNNCTG	1 cut(s)	95
AoxI	GGCC	1 cut(s)	412
ApeKI	GCWGC	5 cut(s)	35, 59, 62, 65, 167
ApoI	RAATTY	2 cut(s)	149, 209
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	3 cut(s)	129, 305, 413
AsuC2I	CCSGG	1 cut(s)	538
AsuII	TTCGAA	1 cut(s)	207
AvaII	GGWCC	2 cut(s)	129, 305
BanII	GRGCYC	1 cut(s)	290
BbvCI	CCTCAGC	1 cut(s)	613
BbvI	GCAGC	5 cut(s)	22, 71, 74, 77, 154
BciT130I	CCWGG	2 cut(s)	163, 377
BclI	TGATCA	1 cut(s)	75
BcnI	CCSGG	1 cut(s)	538
BcoDI	GTCTC	3 cut(s)	232, 548, 627
BcuI	ACTAGT	1 cut(s)	13
BfaI	CTAG	4 cut(s)	14, 200, 582, 694
BfmI	CTRYAG	1 cut(s)	370
BfoI	RGCGCY	1 cut(s)	120
BisI	GCNGC	7 cut(s)	36, 60, 63, 66, 69, 115, 168
BlpI	GCTNAGC	1 cut(s)	284
BlsI	GCNGC	7 cut(s)	37, 61, 64, 67, 70, 116, 169
Bme1390I	CCNGG	3 cut(s)	163, 377, 538
Bme18I	GGWCC	2 cut(s)	129, 305
BmgT120I	GGNCC	3 cut(s)	129, 305, 413
BmiI	GGNNCC	1 cut(s)	307
BmrFI	CCNGG	3 cut(s)	163, 377, 538
BmsI	GCATC	2 cut(s)	250, 402
Bpu10I	CCTNAGC	1 cut(s)	613
Bpu1102I	GCTNAGC	1 cut(s)	284
Bpu14I	TTCGAA	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	516
BpuMI	CCSGG	1 cut(s)	538
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	3 cut(s)	162, 301, 376
BsaWI	WCCGGW	1 cut(s)	218
BsaXI	ACNNNNNCTCC	8 cut(s)	127, 157, 487, 517, 547, 577, 586, 616
Bse1I	ACTGG	2 cut(s)	337, 415
Bse3DI	GCAATG	2 cut(s)	666, 672
BseBI	CCWGG	2 cut(s)	163, 377
BseDI	CCNNGG	3 cut(s)	162, 301, 376
BseMI	GCAATG	2 cut(s)	666, 672
BseMII	CTCAG	3 cut(s)	275, 543, 627
BseNI	ACTGG	2 cut(s)	337, 415
BseRI	GAGGAG	3 cut(s)	426, 534, 594
BseXI	GCAGC	5 cut(s)	22, 71, 74, 77, 154
BshFI	GGCC	1 cut(s)	414
BsiSI	CCGG	2 cut(s)	219, 537
BslFI	GGGAC	1 cut(s)	553
BsmAI	GTCTC	3 cut(s)	232, 548, 627
BsmBI	CGTCTC	1 cut(s)	627
BsmFI	GGGAC	1 cut(s)	553
BsnI	GGCC	1 cut(s)	414
Bso31I	GGTCTC	1 cut(s)	548
Bsp119I	TTCGAA	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp143I	GATC	2 cut(s)	75, 277
Bsp1720I	GCTNAGC	1 cut(s)	284
BspACI	CCGC	3 cut(s)	68, 114, 309
BspANI	GGCC	1 cut(s)	414
BspCNI	CTCAG	3 cut(s)	276, 544, 626
BspLI	GGNNCC	1 cut(s)	307
BspT104I	TTCGAA	1 cut(s)	207
BspTNI	GGTCTC	1 cut(s)	548
BsrDI	GCAATG	2 cut(s)	666, 672
BsrI	ACTGG	2 cut(s)	337, 415
BssECI	CCNNGG	3 cut(s)	162, 301, 376
BssMI	GATC	2 cut(s)	75, 277
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	301
Bst2UI	CCWGG	2 cut(s)	163, 377
Bst4CI	ACNGT	2 cut(s)	109, 371
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	3 cut(s)	284, 552, 613
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	2 cut(s)	78, 280
BstMAI	GTCTC	3 cut(s)	232, 548, 627
BstMBI	GATC	2 cut(s)	75, 277
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 68, 123, 260, 362
BstNI	CCWGG	2 cut(s)	163, 377
BstSCI	CCNGG	3 cut(s)	161, 375, 536
BstSFI	CTRYAG	1 cut(s)	370
BstV1I	GCAGC	5 cut(s)	22, 71, 74, 77, 154
BsuRI	GGCC	1 cut(s)	414
BtsIMutI	CAGTG	2 cut(s)	367, 408
Cac8I	GCNNGC	1 cut(s)	265
CaiI	CAGNNNCTG	1 cut(s)	95
CfoI	GCGC	1 cut(s)	119
Cfr13I	GGNCC	3 cut(s)	129, 305, 413
CviAII	CATG	2 cut(s)	227, 661
DdeI	CTNAG	3 cut(s)	284, 552, 613
DpnI	GATC	2 cut(s)	77, 279
DpnII	GATC	2 cut(s)	75, 277
Eco130I	CCWWGG	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	290
Eco31I	GGTCTC	1 cut(s)	548
Eco47I	GGWCC	2 cut(s)	129, 305
Eco57I	CTGAAG	1 cut(s)	465
EcoO109I	RGGNCCY	1 cut(s)	305
EcoRI	GAATTC	1 cut(s)	209
EcoRII	CCWGG	2 cut(s)	161, 375
EcoT14I	CCWWGG	1 cut(s)	301
EcoT38I	GRGCYC	1 cut(s)	290
ErhI	CCWWGG	1 cut(s)	301
Esp3I	CGTCTC	1 cut(s)	627
FaeI	CATG	2 cut(s)	230, 664
FaiI	YATR	7 cut(s)	24, 56, 80, 156, 228, 404, 662
FaqI	GGGAC	1 cut(s)	553
FatI	CATG	2 cut(s)	226, 660
FauI	CCCGC	1 cut(s)	316
FbaI	TGATCA	1 cut(s)	75
Fnu4HI	GCNGC	7 cut(s)	36, 60, 63, 66, 69, 115, 168
FriOI	GRGCYC	1 cut(s)	290
Fsp4HI	GCNGC	7 cut(s)	36, 60, 63, 66, 69, 115, 168
FspBI	CTAG	4 cut(s)	14, 200, 582, 694
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	7 cut(s)	36, 60, 63, 66, 69, 115, 168
HaeII	RGCGCY	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	414
HapII	CCGG	2 cut(s)	219, 537
HhaI	GCGC	1 cut(s)	119
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	230, 664
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HindIII	AAGCTT	1 cut(s)	252
HinfI	GANTC	1 cut(s)	541
HpaII	CCGG	2 cut(s)	219, 537
Hpy188I	TCNGA	3 cut(s)	445, 484, 553
Hpy188III	TCNNGA	1 cut(s)	146
Hpy99I	CGWCG	1 cut(s)	574
HpyAV	CCTTC	9 cut(s)	190, 426, 510, 516, 522, 528, 534, 558, 576
HpyCH4III	ACNGT	2 cut(s)	109, 371
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	1 cut(s)	267
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 68, 123, 260, 362
HpyF3I	CTNAG	3 cut(s)	284, 552, 613
HpySE526I	ACGT	1 cut(s)	231
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	230, 664
HspAI	GCGC	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	75
Kzo9I	GATC	2 cut(s)	75, 277
LmnI	GCTCC	4 cut(s)	148, 439, 472, 478
Lsp1109I	GCAGC	5 cut(s)	22, 71, 74, 77, 154
LweI	GCATC	2 cut(s)	250, 402
MaeI	CTAG	4 cut(s)	14, 200, 582, 694
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	589
MalI	GATC	2 cut(s)	77, 279
MboI	GATC	2 cut(s)	75, 277
MboII	GAAGA	2 cut(s)	519, 682
MhlI	GDGCHC	1 cut(s)	290
MluCI	AATT	4 cut(s)	48, 149, 209, 478
MlyI	GAGTC	1 cut(s)	535
MnlI	CCTC	8 cut(s)	215, 332, 447, 555, 612, 615, 622, 628
MseI	TTAA	1 cut(s)	389
MslI	CAYNNNNRTG	1 cut(s)	200
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	2 cut(s)	219, 537
MspR9I	CCNGG	3 cut(s)	163, 377, 538
MvaI	CCWGG	2 cut(s)	163, 377
MwoI	GCNNNNNNNGC	5 cut(s)	65, 68, 123, 260, 362
NciI	CCSGG	1 cut(s)	538
NdeII	GATC	2 cut(s)	75, 277
NlaIII	CATG	2 cut(s)	230, 664
NlaIV	GGNNCC	1 cut(s)	307
NmuCI	GTSAC	1 cut(s)	589
NspV	TTCGAA	1 cut(s)	207
PkrI	GCNGC	7 cut(s)	37, 61, 64, 67, 70, 116, 169
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
PpuMI	RGGWCCY	1 cut(s)	305
Psp5II	RGGWCCY	1 cut(s)	305
Psp6I	CCWGG	2 cut(s)	161, 375
PspGI	CCWGG	2 cut(s)	161, 375
PspN4I	GGNNCC	1 cut(s)	307
PspPI	GGNCC	3 cut(s)	129, 305, 413
PspPPI	RGGWCCY	1 cut(s)	305
PstNI	CAGNNNCTG	1 cut(s)	95
RseI	CAYNNNNRTG	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	389
SatI	GCNGC	7 cut(s)	36, 60, 63, 66, 69, 115, 168
Sau3AI	GATC	2 cut(s)	75, 277
Sau96I	GGNCC	3 cut(s)	129, 305, 413
SchI	GAGTC	1 cut(s)	535
ScrFI	CCNGG	3 cut(s)	163, 377, 538
SduI	GDGCHC	1 cut(s)	290
SetI	ASST	8 cut(s)	37, 97, 182, 234, 256, 295, 604, 690
SfaNI	GCATC	2 cut(s)	250, 402
SfcI	CTRYAG	1 cut(s)	370
SfuI	TTCGAA	1 cut(s)	207
SinI	GGWCC	2 cut(s)	129, 305
SmiMI	CAYNNNNRTG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	531
SmoI	CTYRAG	1 cut(s)	531
SpeI	ACTAGT	1 cut(s)	13
Sse9I	AATT	4 cut(s)	48, 149, 209, 478
SsiI	CCGC	3 cut(s)	68, 114, 309
SspMI	CTAG	4 cut(s)	14, 200, 582, 694
StyD4I	CCNGG	3 cut(s)	161, 375, 536
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	2 cut(s)	109, 371
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	1 cut(s)	207
TasI	AATT	4 cut(s)	48, 149, 209, 478
TauI	GCSGC	2 cut(s)	71, 117
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TscAI	CASTG	2 cut(s)	374, 415
TseFI	GTSAC	1 cut(s)	589
TseI	GCWGC	5 cut(s)	35, 59, 62, 65, 167
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	2 cut(s)	337, 649
TspGWI	ACGGA	1 cut(s)	597
TspRI	CASTG	2 cut(s)	374, 415
VpaK11BI	GGWCC	2 cut(s)	129, 305
XapI	RAATTY	2 cut(s)	149, 209
XspI	CTAG	4 cut(s)	14, 200, 582, 694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.