pycom15g15210

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0013579
Physical Location & Seq
Reverse (-)
10560918 .. 10561915
998 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g15210.1

Sequence Viewer

Length: 660 bp
ATGGCGCACAAAATGCTTGGTTATGTGACAGTTTTTGTTGTGTTAGCGGCAGCAGCACTGGTCATAGAAAGAGCAGAAGCTGAATCATACACAGTTGGTGATGATCTTGGTTGGACCAACATTGTTGATTCCAACACTTATTCTTCCTGGGCTGCTAATCACACCTTCAAAGTTGGCGACACTCTAGTGTTCCAGTTCTTAACTGGACGACATGATGTAGCCACACTTACAAAGAAAGCGTATGATGAATGCAGCACCACCGATCTCTTGGGCGTACTAAACCAAGGACCTGCCAGTTACAACCTCAACGAAACCGGCGACTACTACTTCATCTGCACCATCTCCGGCCACTGTAACGATGGTCAGAAGTTGAGCATCAAAGTGACAGCTAGCCCTGCCCCACCACCTTCTCATAGCCCTGCCAAACCTCCTTCTCATGGCCCCGCCCAACCACCTTCCCATAGCCCTGCCCCTCCTCCGTCTGACACTACGGCTCCTATGTCGCCACCAACCACAACGCCTCCTCTTCCTTCTGACACTGAGACTCCTACGTCACCACCAACCACGACGGCGCCTCCTCCTTCTGACGCTTCTTCCCTTGCTTCTACTTTTTCTACTGTTTTCGTGTCCATTCCCATTGCTCTTTTCTACCTCTTCTAG

Protein Analysis

220

Amino Acids

23.08

Weight (kDa)

4.98

Isoelectric Point (pI)

53.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 38 - 122 1.2e-22 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013579)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02920 FvH4_1g02930 FvH4_1g02980
malus_domestica MD02G1029200.v1.1 MD15G1170700.v1.1
prunus_persica Prupe.7G245700_v2.0.a1
pyrus_communis pycom15g15210
rosa_chinensis RchiOBHm_Chr2g0088121
rosa_laevigata RLG00000015923 RLG00000035302
rosa_multiflora Rmu_sc0003275.1_g000046
rosa_roxburghii Rroxscaffold_2G00152950
rosa_rugosa Rorug01G0481300
rosa_samantha Rh2AG036000 Rh2BG034500 Rh2BG035200 Rh2CG036400
rosa_wichuraiana Rw2G002830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 550
Acc36I ACCTGC 1 cut(s) 298
AccB1I GGYRCC 1 cut(s) 571
AciI CCGC 2 cut(s) 47, 444
AcoI YGGCCR 1 cut(s) 346
AcyI GRCGYC 1 cut(s) 572
AfaI GTAC 1 cut(s) 276
AfiI CCNNNNNNNGG 1 cut(s) 437
AgsI TTSAA 1 cut(s) 169
AjnI CCWGG 1 cut(s) 146
AleI CACNNNNGTG 1 cut(s) 185
AluBI AGCT 2 cut(s) 80, 389
AluI AGCT 2 cut(s) 80, 389
Alw26I GTCTC 1 cut(s) 536
AlwNI CAGNNNCTG 1 cut(s) 80
AoxI GGCC 2 cut(s) 346, 439
ApeKI GCWGC 4 cut(s) 50, 53, 152, 252
AspLEI GCGC 2 cut(s) 7, 574
AspS9I GGNCC 3 cut(s) 114, 287, 440
AsuHPI GGTGA 2 cut(s) 110, 546
AsuNHI GCTAGC 1 cut(s) 389
AvaII GGWCC 2 cut(s) 114, 287
BanI GGYRCC 1 cut(s) 571
BbvI GCAGC 4 cut(s) 62, 65, 139, 264
BccI CCATC 2 cut(s) 347, 353
BceAI ACGGC 2 cut(s) 507, 585
BciT130I CCWGG 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 536
BfaI CTAG 3 cut(s) 185, 390, 658
BfoI RGCGCY 1 cut(s) 575
BfuAI ACCTGC 1 cut(s) 298
BisI GCNGC 5 cut(s) 48, 51, 54, 153, 253
BlsI GCNGC 5 cut(s) 49, 52, 55, 154, 254
Bme1390I CCNGG 1 cut(s) 148
Bme18I GGWCC 2 cut(s) 114, 287
BmgT120I GGNCC 3 cut(s) 114, 287, 440
BmiI GGNNCC 3 cut(s) 442, 495, 573
BmrFI CCNGG 1 cut(s) 148
BmsI GCATC 1 cut(s) 384
BmtI GCTAGC 1 cut(s) 393
BsaHI GRCGYC 1 cut(s) 572
BsaJI CCNNGG 2 cut(s) 147, 283
BsaXI ACNNNNNCTCC 8 cut(s) 478, 505, 508, 529, 535, 559, 559, 589
Bsc4I CCNNNNNNNGG 1 cut(s) 437
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 4 cut(s) 63, 193, 208, 294
Bse3DI GCAATG 1 cut(s) 636
BseBI CCWGG 1 cut(s) 148
BseDI CCNNGG 2 cut(s) 147, 283
BseLI CCNNNNNNNGG 1 cut(s) 437
BseMI GCAATG 1 cut(s) 636
BseMII CTCAG 1 cut(s) 531
BseNI ACTGG 4 cut(s) 63, 193, 208, 294
BseRI GAGGAG 3 cut(s) 465, 513, 567
BseXI GCAGC 4 cut(s) 62, 65, 139, 264
BsgI GTGCAG 1 cut(s) 319
BshFI GGCC 2 cut(s) 348, 441
BshNI GGYRCC 1 cut(s) 571
BsiSI CCGG 2 cut(s) 315, 345
BslI CCNNNNNNNGG 1 cut(s) 437
BsmAI GTCTC 1 cut(s) 536
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 2 cut(s) 348, 441
Bsp143I GATC 2 cut(s) 103, 262
BspACI CCGC 2 cut(s) 47, 444
BspANI GGCC 2 cut(s) 348, 441
BspCNI CTCAG 1 cut(s) 532
BspLI GGNNCC 3 cut(s) 442, 495, 573
BspMI ACCTGC 1 cut(s) 298
BspOI GCTAGC 1 cut(s) 393
BspT107I GGYRCC 1 cut(s) 571
BsrDI GCAATG 1 cut(s) 636
BsrFI RCCGGY 1 cut(s) 314
BsrI ACTGG 4 cut(s) 63, 193, 208, 294
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 2 cut(s) 147, 283
BssMI GATC 2 cut(s) 103, 262
BssNI GRCGYC 1 cut(s) 572
BssT1I CCWWGG 1 cut(s) 283
Bst2UI CCWGG 1 cut(s) 148
Bst4CI ACNGT 4 cut(s) 31, 94, 353, 619
Bst6I CTCTTC 1 cut(s) 531
BstACI GRCGYC 1 cut(s) 572
BstAPI GCANNNNNTGC 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 391
BstDEI CTNAG 1 cut(s) 540
BstH2I RGCGCY 1 cut(s) 575
BstHHI GCGC 2 cut(s) 7, 574
BstKTI GATC 2 cut(s) 106, 265
BstMAI GTCTC 1 cut(s) 536
BstMBI GATC 2 cut(s) 103, 262
BstMWI GCNNNNNNNGC 3 cut(s) 13, 53, 395
BstNI CCWGG 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 146
BstV1I GCAGC 4 cut(s) 62, 65, 139, 264
BsuRI GGCC 2 cut(s) 348, 441
BtsIMutI CAGTG 3 cut(s) 56, 349, 537
BveI ACCTGC 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 391
CaiI CAGNNNCTG 1 cut(s) 80
CfoI GCGC 2 cut(s) 7, 574
Cfr10I RCCGGY 1 cut(s) 314
Cfr13I GGNCC 3 cut(s) 114, 287, 440
CseI GACGC 1 cut(s) 596
Csp6I GTAC 1 cut(s) 275
CviAII CATG 2 cut(s) 212, 437
CviQI GTAC 1 cut(s) 275
DdeI CTNAG 1 cut(s) 540
DinI GGCGCC 1 cut(s) 573
DpnI GATC 2 cut(s) 105, 264
DpnII GATC 2 cut(s) 103, 262
DrdI GACNNNNNNGTC 1 cut(s) 550
DseDI GACNNNNNNGTC 1 cut(s) 550
EaeI YGGCCR 1 cut(s) 346
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
Eco130I CCWWGG 1 cut(s) 283
Eco47I GGWCC 2 cut(s) 114, 287
EcoO109I RGGNCCY 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 146
EcoT14I CCWWGG 1 cut(s) 283
EgeI GGCGCC 1 cut(s) 573
EheI GGCGCC 1 cut(s) 573
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 2 cut(s) 215, 440
FaiI YATR 9 cut(s) 24, 65, 88, 213, 243, 414, 438, 462, 500
FatI CATG 2 cut(s) 211, 436
FauI CCCGC 1 cut(s) 451
Fnu4HI GCNGC 5 cut(s) 48, 51, 54, 153, 253
Fsp4HI GCNGC 5 cut(s) 48, 51, 54, 153, 253
FspBI CTAG 3 cut(s) 185, 390, 658
GlaI GCGC 2 cut(s) 6, 573
GluI GCNGC 5 cut(s) 48, 51, 54, 153, 253
HaeII RGCGCY 1 cut(s) 575
HaeIII GGCC 2 cut(s) 348, 441
HapII CCGG 2 cut(s) 315, 345
HgaI GACGC 1 cut(s) 596
HhaI GCGC 2 cut(s) 7, 574
Hin1I GRCGYC 1 cut(s) 572
Hin1II CATG 2 cut(s) 215, 440
Hin6I GCGC 2 cut(s) 5, 572
HinP1I GCGC 2 cut(s) 5, 572
HinfI GANTC 3 cut(s) 83, 128, 544
HpaII CCGG 2 cut(s) 315, 345
HphI GGTGA 2 cut(s) 110, 546
Hpy188I TCNGA 4 cut(s) 366, 484, 535, 586
Hpy99I CGWCG 1 cut(s) 571
HpyAV CCTTC 6 cut(s) 175, 417, 441, 465, 540, 591
HpyCH4III ACNGT 4 cut(s) 31, 94, 353, 619
HpyCH4IV ACGT 1 cut(s) 551
HpyCH4V TGCA 2 cut(s) 252, 336
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 53, 395
HpyF3I CTNAG 1 cut(s) 540
HpySE526I ACGT 1 cut(s) 551
Hsp92I GRCGYC 1 cut(s) 572
Hsp92II CATG 2 cut(s) 215, 440
HspAI GCGC 2 cut(s) 5, 572
KasI GGCGCC 1 cut(s) 571
Kzo9I GATC 2 cut(s) 103, 262
LmnI GCTCC 1 cut(s) 499
Lsp1109I GCAGC 4 cut(s) 62, 65, 139, 264
LweI GCATC 1 cut(s) 384
MaeI CTAG 3 cut(s) 185, 390, 658
MaeII ACGT 1 cut(s) 551
MaeIII GTNAC 5 cut(s) 25, 296, 353, 382, 552
MalI GATC 2 cut(s) 105, 264
MboI GATC 2 cut(s) 103, 262
MboII GAAGA 4 cut(s) 135, 518, 585, 646
Mly113I GGCGCC 1 cut(s) 572
MlyI GAGTC 1 cut(s) 538
MmeI TCCRAC 2 cut(s) 92, 156
MnlI CCTC 8 cut(s) 314, 438, 483, 486, 531, 534, 585, 588
MseI TTAA 1 cut(s) 200
MslI CAYNNNNRTG 2 cut(s) 185, 380
MspI CCGG 2 cut(s) 315, 345
MspR9I CCNGG 1 cut(s) 148
Mva1269I GAATGC 1 cut(s) 254
MvaI CCWGG 1 cut(s) 148
MwoI GCNNNNNNNGC 3 cut(s) 13, 53, 395
NarI GGCGCC 1 cut(s) 572
NdeII GATC 2 cut(s) 103, 262
NheI GCTAGC 1 cut(s) 389
NlaIII CATG 2 cut(s) 215, 440
NlaIV GGNNCC 3 cut(s) 442, 495, 573
NmuCI GTSAC 3 cut(s) 25, 382, 552
OliI CACNNNNGTG 1 cut(s) 185
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PctI GAATGC 1 cut(s) 254
PfeI GAWTC 2 cut(s) 83, 128
PkrI GCNGC 5 cut(s) 49, 52, 55, 154, 254
PleI GAGTC 1 cut(s) 538
PluTI GGCGCC 1 cut(s) 575
PpsI GAGTC 1 cut(s) 538
PpuMI RGGWCCY 1 cut(s) 287
Psp5II RGGWCCY 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 146
PspGI CCWGG 1 cut(s) 146
PspN4I GGNNCC 3 cut(s) 442, 495, 573
PspPI GGNCC 3 cut(s) 114, 287, 440
PspPPI RGGWCCY 1 cut(s) 287
PstNI CAGNNNCTG 1 cut(s) 80
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
RseI CAYNNNNRTG 2 cut(s) 185, 380
SaqAI TTAA 1 cut(s) 200
SatI GCNGC 5 cut(s) 48, 51, 54, 153, 253
Sau3AI GATC 2 cut(s) 103, 262
Sau96I GGNCC 3 cut(s) 114, 287, 440
SchI GAGTC 1 cut(s) 538
ScrFI CCNGG 1 cut(s) 148
SfaNI GCATC 1 cut(s) 384
SfoI GGCGCC 1 cut(s) 573
SinI GGWCC 2 cut(s) 114, 287
SmiMI CAYNNNNRTG 2 cut(s) 185, 380
SsiI CCGC 2 cut(s) 47, 444
SspDI GGCGCC 1 cut(s) 571
SspMI CTAG 3 cut(s) 185, 390, 658
StyD4I CCNGG 1 cut(s) 146
StyI CCWWGG 1 cut(s) 283
TaaI ACNGT 4 cut(s) 31, 94, 353, 619
TaiI ACGT 1 cut(s) 554
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 2 cut(s) 83, 128
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TscAI CASTG 3 cut(s) 63, 356, 544
TseFI GTSAC 3 cut(s) 25, 382, 552
TseI GCWGC 4 cut(s) 50, 53, 152, 252
Tsp45I GTSAC 3 cut(s) 25, 382, 552
TspDTI ATGAA 2 cut(s) 261, 319
TspGWI ACGGA 1 cut(s) 468
TspRI CASTG 3 cut(s) 63, 356, 544
VpaK11BI GGWCC 2 cut(s) 114, 287
XcmI CCANNNNNNNNNTGG 3 cut(s) 200, 265, 356
XspI CTAG 3 cut(s) 185, 390, 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.