Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0013579

Physical Location & Seq

Genomic Coordinates Reverse (-)

2879096 .. 2880079

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG036400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGGCCTAAGAAACTTAGTACGACTACATCTGTGGTTGCAATTGTTATAGCTTTAGCAGCTGTGCTACAAACCGCAGAAGCTGAAACGCACAAAGTGAGTTGGAATAATACAGTTGGTGCCAACTACTATACTTCTTGGGCTGCCAATCAGACCTTCAAAGTTGGCGACCTTCTAGTGTTCAATTTCACTACTGGACGACATGACGTAGCTGAAGTTGCAAAGGATGCTTACGAAAAGTGCAACGTCACTGACCTCATCAGCAACCCTAAGTACGACGGACCAGCCAACTACACCCTCAATGCCACCGGCGATCACTACTTTATCTGCCTCTTCCCTGGACACTGTGACCAAGGACAGAAGTTAGCAATCACCGTAACAACTACTAGCCATTCCGGCTCTGCGCCTACGCCTGCTCCTGCCCCAAGTACTACTGGTACTCCTCCTTCCAAGTCCGAATCTCCTCCTCCTTCTGGAGCTAAATCTCCTCCTAGTTCAACATCGCCACCACCAAGCACGTCAAGCACTACAGCACCACCACCACCAAAGGGCTCGACAGGCAGCTCTTCTCATGTTGTTACCATTTCTACTGTTTTCATGTTCATTGCCGTAGCTCTTTTCTGCCTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0015690 GO:0016020 GO:0019222 GO:0030001 GO:0031224 GO:0031225 GO:0031226 GO:0031323 GO:0031326 GO:0033554 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070417 GO:0071944 GO:0072512 GO:1900376 GO:1901141 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

210

Amino Acids

21.82

Weight (kDa)

6.99

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	35 - 120	1e-22	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013579)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02920 FvH4_1g02930 FvH4_1g02980
malus_domestica	MD02G1029200.v1.1 MD15G1170700.v1.1
prunus_persica	Prupe.7G245700_v2.0.a1
pyrus_communis	pycom15g15210
rosa_chinensis	RchiOBHm_Chr2g0088121
rosa_laevigata	RLG00000015923 RLG00000035302
rosa_multiflora	Rmu_sc0003275.1_g000046
rosa_roxburghii	Rroxscaffold_2G00152950
rosa_rugosa	Rorug01G0481300
rosa_samantha	Rh2AG036000 Rh2BG034500 Rh2BG035200 Rh2CG036400
rosa_wichuraiana	Rw2G002830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AciI	CCGC	1 cut(s)	75
AcuI	CTGAAG	1 cut(s)	234
AdeI	CACNNNGTG	1 cut(s)	97
AfaI	GTAC	4 cut(s)	22, 275, 430, 439
AfiI	CCNNNNNNNGG	2 cut(s)	473, 548
AgsI	TTSAA	3 cut(s)	160, 184, 498
AjiI	CACGTC	1 cut(s)	519
AjnI	CCWGG	1 cut(s)	337
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	7 cut(s)	53, 62, 83, 212, 479, 564, 614
AluI	AGCT	7 cut(s)	53, 62, 83, 212, 479, 564, 614
AlwNI	CAGNNNCTG	1 cut(s)	83
AoxI	GGCC	1 cut(s)	5
ApeKI	GCWGC	3 cut(s)	59, 143, 561
AspLEI	GCGC	1 cut(s)	406
AspS9I	GGNCC	2 cut(s)	5, 281
AsuHPI	GGTGA	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	554
BarI	GAAGNNNNNNTAC	2 cut(s)	430, 462
BbvI	GCAGC	3 cut(s)	71, 130, 573
BceAI	ACGGC	1 cut(s)	593
BciT130I	CCWGG	1 cut(s)	339
BfaI	CTAG	4 cut(s)	176, 387, 492, 631
BfmI	CTRYAG	1 cut(s)	528
BglI	GCCNNNNNGGC	1 cut(s)	396
BisI	GCNGC	3 cut(s)	60, 144, 562
BlsI	GCNGC	3 cut(s)	61, 145, 563
BmcAI	AGTACT	1 cut(s)	430
Bme1390I	CCNGG	1 cut(s)	339
Bme18I	GGWCC	1 cut(s)	281
BmgBI	CACGTC	1 cut(s)	519
BmgT120I	GGNCC	2 cut(s)	5, 281
BmiI	GGNNCC	2 cut(s)	6, 121
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	1 cut(s)	217
BpmI	CTGGAG	1 cut(s)	495
BsaJI	CCNNGG	2 cut(s)	337, 352
BsaXI	ACNNNNNCTCC	4 cut(s)	400, 424, 430, 454
Bsc4I	CCNNNNNNNGG	2 cut(s)	473, 548
Bse118I	RCCGGY	1 cut(s)	308
Bse1I	ACTGG	2 cut(s)	199, 439
Bse3DI	GCAATG	1 cut(s)	603
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	2 cut(s)	337, 352
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	2 cut(s)	473, 548
BseMI	GCAATG	1 cut(s)	603
BseNI	ACTGG	2 cut(s)	199, 439
BseRI	GAGGAG	4 cut(s)	432, 453, 456, 477
BseXI	GCAGC	3 cut(s)	71, 130, 573
BshFI	GGCC	1 cut(s)	7
BshNI	GGYRCC	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	309, 396
BslI	CCNNNNNNNGG	2 cut(s)	473, 548
BsnI	GGCC	1 cut(s)	7
Bsp1286I	GDGCHC	1 cut(s)	554
Bsp143I	GATC	1 cut(s)	313
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	1 cut(s)	7
BspLI	GGNNCC	2 cut(s)	6, 121
BspQI	GCTCTTC	1 cut(s)	571
BspT107I	GGYRCC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	603
BsrFI	RCCGGY	1 cut(s)	308
BsrI	ACTGG	2 cut(s)	199, 439
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	337, 352
BssMI	GATC	1 cut(s)	313
BssT1I	CCWWGG	1 cut(s)	352
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	4 cut(s)	115, 347, 376, 592
Bst6I	CTCTTC	2 cut(s)	338, 571
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	3 cut(s)	9, 17, 270
BstF5I	GGATG	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	406
BstKTI	GATC	1 cut(s)	316
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 218, 227, 396, 522, 558
BstNI	CCWGG	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	337
BstSFI	CTRYAG	1 cut(s)	528
BstV1I	GCAGC	3 cut(s)	71, 130, 573
BsuRI	GGCC	1 cut(s)	7
BtgZI	GCGATG	1 cut(s)	486
BtrI	CACGTC	1 cut(s)	519
BtsCI	GGATG	1 cut(s)	232
BtsIMutI	CAGTG	2 cut(s)	249, 343
Cac8I	GCNNGC	1 cut(s)	414
CaiI	CAGNNNCTG	1 cut(s)	83
CfoI	GCGC	1 cut(s)	406
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	2 cut(s)	5, 281
Csp6I	GTAC	4 cut(s)	21, 274, 429, 438
CviAII	CATG	3 cut(s)	203, 572, 598
CviQI	GTAC	4 cut(s)	21, 274, 429, 438
DdeI	CTNAG	3 cut(s)	9, 17, 270
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
DraIII	CACNNNGTG	1 cut(s)	97
Eam1104I	CTCTTC	2 cut(s)	338, 571
EarI	CTCTTC	2 cut(s)	338, 571
Eco130I	CCWWGG	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	554
Eco47I	GGWCC	1 cut(s)	281
Eco57I	CTGAAG	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	352
EcoT38I	GRGCYC	1 cut(s)	554
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	3 cut(s)	206, 575, 601
FaiI	YATR	5 cut(s)	50, 132, 204, 573, 599
FatI	CATG	3 cut(s)	202, 571, 597
Fnu4HI	GCNGC	3 cut(s)	60, 144, 562
FokI	GGATG	1 cut(s)	239
FriOI	GRGCYC	1 cut(s)	554
Fsp4HI	GCNGC	3 cut(s)	60, 144, 562
FspBI	CTAG	4 cut(s)	176, 387, 492, 631
GlaI	GCGC	1 cut(s)	405
GluI	GCNGC	3 cut(s)	60, 144, 562
GsuI	CTGGAG	1 cut(s)	495
HaeIII	GGCC	1 cut(s)	7
HapII	CCGG	2 cut(s)	309, 396
HhaI	GCGC	1 cut(s)	406
Hin1II	CATG	3 cut(s)	206, 575, 601
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HinfI	GANTC	1 cut(s)	458
HpaII	CCGG	2 cut(s)	309, 396
HphI	GGTGA	1 cut(s)	364
Hpy188I	TCNGA	2 cut(s)	153, 457
Hpy188III	TCNNGA	1 cut(s)	474
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	4 cut(s)	166, 182, 456, 480
HpyCH4III	ACNGT	4 cut(s)	115, 347, 376, 592
HpyCH4IV	ACGT	3 cut(s)	207, 246, 518
HpyCH4V	TGCA	3 cut(s)	41, 221, 243
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 218, 227, 396, 522, 558
HpyF3I	CTNAG	3 cut(s)	9, 17, 270
HpySE526I	ACGT	3 cut(s)	207, 246, 518
Hsp92II	CATG	3 cut(s)	206, 575, 601
HspAI	GCGC	1 cut(s)	404
Kzo9I	GATC	1 cut(s)	313
LguI	GCTCTTC	1 cut(s)	571
LmnI	GCTCC	2 cut(s)	421, 476
Lsp1109I	GCAGC	3 cut(s)	71, 130, 573
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	4 cut(s)	176, 387, 492, 631
MaeII	ACGT	3 cut(s)	207, 246, 518
MaeIII	GTNAC	4 cut(s)	247, 347, 376, 577
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MboII	GAAGA	3 cut(s)	325, 558, 619
MfeI	CAATTG	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	554
MluCI	AATT	2 cut(s)	42, 184
MmeI	TCCRAC	1 cut(s)	83
MnlI	CCTC	7 cut(s)	266, 308, 341, 453, 474, 477, 498
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	2 cut(s)	309, 396
MspR9I	CCNGG	1 cut(s)	339
MunI	CAATTG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	6 cut(s)	59, 218, 227, 396, 522, 558
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	3 cut(s)	206, 575, 601
NlaIV	GGNNCC	2 cut(s)	6, 121
NmuCI	GTSAC	2 cut(s)	247, 347
PciSI	GCTCTTC	1 cut(s)	571
PfeI	GAWTC	1 cut(s)	458
PkrI	GCNGC	3 cut(s)	61, 145, 563
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	2 cut(s)	6, 121
PspPI	GGNCC	2 cut(s)	5, 281
PstNI	CAGNNNCTG	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	4 cut(s)	22, 275, 430, 439
RsaNI	GTAC	4 cut(s)	21, 274, 429, 438
SapI	GCTCTTC	1 cut(s)	571
SatI	GCNGC	3 cut(s)	60, 144, 562
Sau3AI	GATC	1 cut(s)	313
Sau96I	GGNCC	2 cut(s)	5, 281
ScaI	AGTACT	1 cut(s)	430
ScrFI	CCNGG	1 cut(s)	339
SduI	GDGCHC	1 cut(s)	554
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	1 cut(s)	528
SgrAI	CRCCGGYG	1 cut(s)	308
SinI	GGWCC	1 cut(s)	281
Sse9I	AATT	2 cut(s)	42, 184
SsiI	CCGC	1 cut(s)	75
SspMI	CTAG	4 cut(s)	176, 387, 492, 631
StyD4I	CCNGG	1 cut(s)	337
StyI	CCWWGG	1 cut(s)	352
TaaI	ACNGT	4 cut(s)	115, 347, 376, 592
TaiI	ACGT	3 cut(s)	210, 249, 521
TaqI	TCGA	1 cut(s)	554
TasI	AATT	2 cut(s)	42, 184
TatI	WGTACW	1 cut(s)	428
TfiI	GAWTC	1 cut(s)	458
TscAI	CASTG	2 cut(s)	256, 350
TseFI	GTSAC	2 cut(s)	247, 347
TseI	GCWGC	3 cut(s)	59, 143, 561
Tsp45I	GTSAC	2 cut(s)	247, 347
TspDTI	ATGAA	2 cut(s)	586, 592
TspGWI	ACGGA	1 cut(s)	294
TspRI	CASTG	2 cut(s)	256, 350
VpaK11BI	GGWCC	1 cut(s)	281
XspI	CTAG	4 cut(s)	176, 387, 492, 631
ZrmI	AGTACT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.