MD15G1170700.v1.1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0013579
Physical Location & Seq
Reverse (-)
13171465 .. 13172587
1123 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1170700.v1.1.491

Sequence Viewer

Length: 669 bp
ATGGCGCACAAAATGCTTGGTTATGTGACAGTTTTTGTTGCGTTAGCTGCAGCAGTACTGGTCATAGAAAGAGCAGAAGCTGAATCATACACAGTTGGTGATGATCTTGGTTGGACCAACATTGTTGATTCCAACACTTATTCTTCCTGGGCAGCTAATCACACCTTCAAAGTTGGCGACACTCTAGTGTTCGAGTTCCTAACTGGACGACATGATGTAGCCACACTTACAAAGAAAGCGTATGATGAATGCAGCACCACCGATCCCTTGGGCGTACTAGACCAAGGACCTGCCAGTTACATCCTCAACGAAACCGGCAATTACTACTTCATCTGCGCCATCTCCGGCCACTGTAACGATGGTCAGAAGTTGAGCATCAAAGTGACAGCTAGCCCTGCCCAACCTCCTTCTCATGGCCCTGCCCCACCACCTTCTCATAGCCCTGCCAAACCTCCTTCTCATCGCCCTGCCCAACCACCTTCCCAGAGCCCTGCCCCTCCTCCGTCTGACACTACGGCTCCTGTGTCGCCACCTCTTCCTTCTGACACTGAAACTCCTATGTCACCACCAACCACGACGGCGCCTCCTCCTTCTGACGCTTCTTCCCTTGCTTCTACTTTTTCTACTGTTTTCGTGTCCATTCCCATTGCTCTTTTCTACCTCTTCTAG

Protein Analysis

223

Amino Acids

23.4

Weight (kDa)

5.02

Isoelectric Point (pI)

60.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 38 - 122 4.1e-23 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013579)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02920 FvH4_1g02930 FvH4_1g02980
malus_domestica MD02G1029200.v1.1 MD15G1170700.v1.1
prunus_persica Prupe.7G245700_v2.0.a1
pyrus_communis pycom15g15210
rosa_chinensis RchiOBHm_Chr2g0088121
rosa_laevigata RLG00000015923 RLG00000035302
rosa_multiflora Rmu_sc0003275.1_g000046
rosa_roxburghii Rroxscaffold_2G00152950
rosa_rugosa Rorug01G0481300
rosa_samantha Rh2AG036000 Rh2BG034500 Rh2BG035200 Rh2CG036400
rosa_wichuraiana Rw2G002830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 298
AccB1I GGYRCC 1 cut(s) 580
AclWI GGATC 1 cut(s) 257
AcoI YGGCCR 1 cut(s) 346
AcyI GRCGYC 1 cut(s) 581
AfaI GTAC 2 cut(s) 57, 276
AfiI CCNNNNNNNGG 1 cut(s) 413
AgsI TTSAA 1 cut(s) 169
AjnI CCWGG 1 cut(s) 146
AleI CACNNNNGTG 1 cut(s) 185
AluBI AGCT 4 cut(s) 47, 80, 155, 389
AluI AGCT 4 cut(s) 47, 80, 155, 389
AlwI GGATC 1 cut(s) 257
AlwNI CAGNNNCTG 1 cut(s) 80
AoxI GGCC 2 cut(s) 346, 415
ApeKI GCWGC 4 cut(s) 47, 50, 152, 252
AspLEI GCGC 3 cut(s) 7, 338, 583
AspS9I GGNCC 3 cut(s) 114, 287, 416
AsuHPI GGTGA 2 cut(s) 110, 555
AsuNHI GCTAGC 1 cut(s) 389
AvaII GGWCC 2 cut(s) 114, 287
BanI GGYRCC 1 cut(s) 580
BanII GRGCYC 1 cut(s) 491
BbvI GCAGC 4 cut(s) 34, 62, 164, 264
BccI CCATC 2 cut(s) 347, 353
BceAI ACGGC 2 cut(s) 531, 594
BciT130I CCWGG 1 cut(s) 148
BfaI CTAG 4 cut(s) 185, 278, 390, 667
BfmI CTRYAG 1 cut(s) 48
BfoI RGCGCY 1 cut(s) 584
BfuAI ACCTGC 1 cut(s) 298
BisI GCNGC 4 cut(s) 48, 51, 153, 253
BlsI GCNGC 4 cut(s) 49, 52, 154, 254
BmcAI AGTACT 1 cut(s) 57
Bme1390I CCNGG 1 cut(s) 148
Bme18I GGWCC 2 cut(s) 114, 287
BmgT120I GGNCC 3 cut(s) 114, 287, 416
BmiI GGNNCC 2 cut(s) 519, 582
BmrFI CCNGG 1 cut(s) 148
BmsI GCATC 1 cut(s) 384
BmtI GCTAGC 1 cut(s) 393
BsaHI GRCGYC 1 cut(s) 581
BsaJI CCNNGG 3 cut(s) 147, 267, 283
BsaXI ACNNNNNCTCC 6 cut(s) 502, 532, 538, 568, 568, 598
Bsc4I CCNNNNNNNGG 1 cut(s) 413
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 3 cut(s) 63, 208, 294
Bse3DI GCAATG 1 cut(s) 645
BseBI CCWGG 1 cut(s) 148
BseDI CCNNGG 3 cut(s) 147, 267, 283
BseGI GGATG 1 cut(s) 300
BseLI CCNNNNNNNGG 1 cut(s) 413
BseMI GCAATG 1 cut(s) 645
BseNI ACTGG 3 cut(s) 63, 208, 294
BseRI GAGGAG 2 cut(s) 489, 576
BseXI GCAGC 4 cut(s) 34, 62, 164, 264
BshFI GGCC 2 cut(s) 348, 417
BshNI GGYRCC 1 cut(s) 580
BsiSI CCGG 2 cut(s) 315, 345
BslI CCNNNNNNNGG 1 cut(s) 413
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 2 cut(s) 348, 417
Bsp1286I GDGCHC 1 cut(s) 491
Bsp143I GATC 2 cut(s) 103, 262
BspANI GGCC 2 cut(s) 348, 417
BspLI GGNNCC 2 cut(s) 519, 582
BspMAI CTGCAG 1 cut(s) 52
BspMI ACCTGC 1 cut(s) 298
BspOI GCTAGC 1 cut(s) 393
BspPI GGATC 1 cut(s) 257
BspT107I GGYRCC 1 cut(s) 580
BsrDI GCAATG 1 cut(s) 645
BsrFI RCCGGY 1 cut(s) 314
BsrI ACTGG 3 cut(s) 63, 208, 294
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 3 cut(s) 147, 267, 283
BssMI GATC 2 cut(s) 103, 262
BssNI GRCGYC 1 cut(s) 581
BssT1I CCWWGG 2 cut(s) 267, 283
Bst2UI CCWGG 1 cut(s) 148
Bst4CI ACNGT 4 cut(s) 31, 94, 353, 628
Bst6I CTCTTC 1 cut(s) 540
BstACI GRCGYC 1 cut(s) 581
BstAPI GCANNNNNTGC 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 391
BstF5I GGATG 1 cut(s) 300
BstH2I RGCGCY 1 cut(s) 584
BstHHI GCGC 3 cut(s) 7, 338, 583
BstKTI GATC 2 cut(s) 106, 265
BstMBI GATC 2 cut(s) 103, 262
BstMWI GCNNNNNNNGC 3 cut(s) 13, 47, 395
BstNI CCWGG 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 146
BstSFI CTRYAG 1 cut(s) 48
BstV1I GCAGC 4 cut(s) 34, 62, 164, 264
BsuRI GGCC 2 cut(s) 348, 417
BtgZI GCGATG 1 cut(s) 446
BtsCI GGATG 1 cut(s) 300
BtsIMutI CAGTG 2 cut(s) 349, 546
BveI ACCTGC 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 391
CaiI CAGNNNCTG 1 cut(s) 80
CfoI GCGC 3 cut(s) 7, 338, 583
Cfr10I RCCGGY 1 cut(s) 314
Cfr13I GGNCC 3 cut(s) 114, 287, 416
CseI GACGC 1 cut(s) 605
Csp6I GTAC 2 cut(s) 56, 275
CviAII CATG 2 cut(s) 212, 413
CviQI GTAC 2 cut(s) 56, 275
DinI GGCGCC 1 cut(s) 582
DpnI GATC 2 cut(s) 105, 264
DpnII GATC 2 cut(s) 103, 262
EaeI YGGCCR 1 cut(s) 346
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
Eco130I CCWWGG 2 cut(s) 267, 283
Eco24I GRGCYC 1 cut(s) 491
Eco47I GGWCC 2 cut(s) 114, 287
EcoO109I RGGNCCY 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 146
EcoT14I CCWWGG 2 cut(s) 267, 283
EcoT38I GRGCYC 1 cut(s) 491
EgeI GGCGCC 1 cut(s) 582
EheI GGCGCC 1 cut(s) 582
ErhI CCWWGG 2 cut(s) 267, 283
FaeI CATG 2 cut(s) 215, 416
FaiI YATR 8 cut(s) 24, 65, 88, 213, 243, 414, 438, 560
FatI CATG 2 cut(s) 211, 412
Fnu4HI GCNGC 4 cut(s) 48, 51, 153, 253
FokI GGATG 1 cut(s) 287
FriOI GRGCYC 1 cut(s) 491
Fsp4HI GCNGC 4 cut(s) 48, 51, 153, 253
FspBI CTAG 4 cut(s) 185, 278, 390, 667
GlaI GCGC 3 cut(s) 6, 337, 582
GluI GCNGC 4 cut(s) 48, 51, 153, 253
HaeII RGCGCY 1 cut(s) 584
HaeIII GGCC 2 cut(s) 348, 417
HapII CCGG 2 cut(s) 315, 345
HgaI GACGC 1 cut(s) 605
HhaI GCGC 3 cut(s) 7, 338, 583
Hin1I GRCGYC 1 cut(s) 581
Hin1II CATG 2 cut(s) 215, 416
Hin6I GCGC 3 cut(s) 5, 336, 581
HinP1I GCGC 3 cut(s) 5, 336, 581
HinfI GANTC 2 cut(s) 83, 128
HpaII CCGG 2 cut(s) 315, 345
HphI GGTGA 2 cut(s) 110, 555
Hpy188I TCNGA 4 cut(s) 366, 508, 544, 595
Hpy99I CGWCG 1 cut(s) 580
HpyAV CCTTC 7 cut(s) 175, 417, 441, 465, 489, 549, 600
HpyCH4III ACNGT 4 cut(s) 31, 94, 353, 628
HpyCH4V TGCA 2 cut(s) 50, 252
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 47, 395
Hsp92I GRCGYC 1 cut(s) 581
Hsp92II CATG 2 cut(s) 215, 416
HspAI GCGC 3 cut(s) 5, 336, 581
KasI GGCGCC 1 cut(s) 580
Kzo9I GATC 2 cut(s) 103, 262
LmnI GCTCC 1 cut(s) 523
Lsp1109I GCAGC 4 cut(s) 34, 62, 164, 264
LweI GCATC 1 cut(s) 384
MaeI CTAG 4 cut(s) 185, 278, 390, 667
MaeIII GTNAC 5 cut(s) 25, 296, 353, 382, 561
MalI GATC 2 cut(s) 105, 264
MboI GATC 2 cut(s) 103, 262
MboII GAAGA 4 cut(s) 135, 527, 594, 655
MhlI GDGCHC 1 cut(s) 491
MluCI AATT 1 cut(s) 319
Mly113I GGCGCC 1 cut(s) 581
MmeI TCCRAC 2 cut(s) 92, 156
MnlI CCTC 8 cut(s) 314, 414, 462, 507, 510, 543, 594, 597
MslI CAYNNNNRTG 2 cut(s) 185, 380
MspI CCGG 2 cut(s) 315, 345
MspR9I CCNGG 1 cut(s) 148
Mva1269I GAATGC 1 cut(s) 254
MvaI CCWGG 1 cut(s) 148
MwoI GCNNNNNNNGC 3 cut(s) 13, 47, 395
NarI GGCGCC 1 cut(s) 581
NdeII GATC 2 cut(s) 103, 262
NheI GCTAGC 1 cut(s) 389
NlaIII CATG 2 cut(s) 215, 416
NlaIV GGNNCC 2 cut(s) 519, 582
NmuCI GTSAC 3 cut(s) 25, 382, 561
OliI CACNNNNGTG 1 cut(s) 185
PctI GAATGC 1 cut(s) 254
PfeI GAWTC 2 cut(s) 83, 128
PkrI GCNGC 4 cut(s) 49, 52, 154, 254
PluTI GGCGCC 1 cut(s) 584
PpuMI RGGWCCY 1 cut(s) 287
Psp5II RGGWCCY 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 146
PspGI CCWGG 1 cut(s) 146
PspN4I GGNNCC 2 cut(s) 519, 582
PspPI GGNCC 3 cut(s) 114, 287, 416
PspPPI RGGWCCY 1 cut(s) 287
PstI CTGCAG 1 cut(s) 52
PstNI CAGNNNCTG 1 cut(s) 80
RsaI GTAC 2 cut(s) 57, 276
RsaNI GTAC 2 cut(s) 56, 275
RseI CAYNNNNRTG 2 cut(s) 185, 380
SatI GCNGC 4 cut(s) 48, 51, 153, 253
Sau3AI GATC 2 cut(s) 103, 262
Sau96I GGNCC 3 cut(s) 114, 287, 416
ScaI AGTACT 1 cut(s) 57
ScrFI CCNGG 1 cut(s) 148
SduI GDGCHC 1 cut(s) 491
SfaNI GCATC 1 cut(s) 384
SfcI CTRYAG 1 cut(s) 48
SfoI GGCGCC 1 cut(s) 582
SinI GGWCC 2 cut(s) 114, 287
SmiMI CAYNNNNRTG 2 cut(s) 185, 380
Sse9I AATT 1 cut(s) 319
SspDI GGCGCC 1 cut(s) 580
SspMI CTAG 4 cut(s) 185, 278, 390, 667
StyD4I CCNGG 1 cut(s) 146
StyI CCWWGG 2 cut(s) 267, 283
TaaI ACNGT 4 cut(s) 31, 94, 353, 628
TaqI TCGA 1 cut(s) 192
TasI AATT 1 cut(s) 319
TatI WGTACW 1 cut(s) 55
TfiI GAWTC 2 cut(s) 83, 128
TscAI CASTG 2 cut(s) 356, 553
TseFI GTSAC 3 cut(s) 25, 382, 561
TseI GCWGC 4 cut(s) 47, 50, 152, 252
Tsp45I GTSAC 3 cut(s) 25, 382, 561
TspDTI ATGAA 2 cut(s) 261, 319
TspGWI ACGGA 1 cut(s) 492
TspRI CASTG 2 cut(s) 356, 553
VpaK11BI GGWCC 2 cut(s) 114, 287
XcmI CCANNNNNNNNNTGG 2 cut(s) 265, 356
XspI CTAG 4 cut(s) 185, 278, 390, 667
ZrmI AGTACT 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.