Rh2BG034500

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0013579
Physical Location & Seq
Reverse (-)
2379295 .. 2379772
478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG034500.1

Sequence Viewer

Length: 369 bp
ATGTTACATAGAACAGAAGCCGTAGACTACAAAGTTGGAGACGACTTGGGTTGGACTATACCTCCGGACGGTGCCGACACGTATGCAGACTGGTCACTGGACTGCCGAGCATACCCTTGTAGTCGACGTGTTGATACTATAACATTTGACTTTCCAGTAGGAGAACAAGACGTGGCTTTTGTGACAAAGGAGGATTTCGACACGTGCACCACCACAAATCCGCTATGGGAATCACCGGTTCTAGATGAAGTTACACTTGTTCAATCAGCGGGCACATTTTATTTCATTGGCACCTTCACCGGCCACTGCGCCAAAGGCCAAAAGGTTGCCGTTAACTGGACCAACTCTCCAGTCATGACTCCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

122

Amino Acids

13.53

Weight (kDa)

4.27

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 45 - 107 4.3e-09 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013579)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02920 FvH4_1g02930 FvH4_1g02980
malus_domestica MD02G1029200.v1.1 MD15G1170700.v1.1
prunus_persica Prupe.7G245700_v2.0.a1
pyrus_communis pycom15g15210
rosa_chinensis RchiOBHm_Chr2g0088121
rosa_laevigata RLG00000015923 RLG00000035302
rosa_multiflora Rmu_sc0003275.1_g000046
rosa_roxburghii Rroxscaffold_2G00152950
rosa_rugosa Rorug01G0481300
rosa_samantha Rh2AG036000 Rh2BG034500 Rh2BG035200 Rh2CG036400
rosa_wichuraiana Rw2G002830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 71, 290
AccI GTMKAC 2 cut(s) 24, 124
AccIII TCCGGA 1 cut(s) 64
AciI CCGC 2 cut(s) 221, 269
AcoI YGGCCR 1 cut(s) 301
AcvI CACGTG 1 cut(s) 204
AfiI CCNNNNNNNGG 2 cut(s) 68, 336
AflIII ACRYGT 3 cut(s) 78, 127, 201
AgeI ACCGGT 1 cut(s) 235
AgsI TTSAA 1 cut(s) 263
AjiI CACGTC 2 cut(s) 128, 172
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 33
Alw44I GTGCAC 1 cut(s) 205
Aor13HI TCCGGA 1 cut(s) 64
AoxI GGCC 2 cut(s) 301, 316
ApaLI GTGCAC 1 cut(s) 205
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
AsiGI ACCGGT 1 cut(s) 235
AspLEI GCGC 1 cut(s) 311
AspS9I GGNCC 1 cut(s) 339
AsuHPI GGTGA 2 cut(s) 225, 289
AvaII GGWCC 1 cut(s) 339
BaeGI GKGCMC 2 cut(s) 209, 275
BanI GGYRCC 2 cut(s) 71, 290
BbrPI CACGTG 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 209
BceAI ACGGC 2 cut(s) 5, 314
BcgI CGANNNNNNTGC 2 cut(s) 65, 99
BcoDI GTCTC 1 cut(s) 33
BfaI CTAG 1 cut(s) 242
Bme18I GGWCC 1 cut(s) 339
BmgBI CACGTC 2 cut(s) 128, 172
BmgT120I GGNCC 1 cut(s) 339
BmiI GGNNCC 2 cut(s) 73, 292
BpmI CTGGAG 1 cut(s) 333
BsaAI YACGTR 2 cut(s) 81, 204
BsaWI WCCGGW 2 cut(s) 64, 235
BsaXI ACNNNNNCTCC 4 cut(s) 46, 76, 331, 361
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 336
Bse118I RCCGGY 2 cut(s) 235, 299
Bse1I ACTGG 5 cut(s) 95, 102, 155, 341, 350
BseAI TCCGGA 1 cut(s) 64
BseLI CCNNNNNNNGG 2 cut(s) 68, 336
BseNI ACTGG 5 cut(s) 95, 102, 155, 341, 350
BseSI GKGCMC 2 cut(s) 209, 275
BshFI GGCC 2 cut(s) 303, 318
BshNI GGYRCC 2 cut(s) 71, 290
BshTI ACCGGT 1 cut(s) 235
BsiHKAI GWGCWC 1 cut(s) 209
BsiSI CCGG 3 cut(s) 65, 236, 300
BslI CCNNNNNNNGG 2 cut(s) 68, 336
BsmAI GTCTC 1 cut(s) 33
BsmBI CGTCTC 1 cut(s) 33
BsnI GGCC 2 cut(s) 303, 318
Bsp1286I GDGCHC 2 cut(s) 209, 275
Bsp13I TCCGGA 1 cut(s) 64
BspACI CCGC 2 cut(s) 221, 269
BspANI GGCC 2 cut(s) 303, 318
BspEI TCCGGA 1 cut(s) 64
BspHI TCATGA 1 cut(s) 354
BspLI GGNNCC 2 cut(s) 73, 292
BspT107I GGYRCC 2 cut(s) 71, 290
BsrFI RCCGGY 2 cut(s) 235, 299
BsrI ACTGG 5 cut(s) 95, 102, 155, 341, 350
BssAI RCCGGY 2 cut(s) 235, 299
Bst4CI ACNGT 1 cut(s) 71
BstBAI YACGTR 2 cut(s) 81, 204
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 1 cut(s) 366
BstHHI GCGC 1 cut(s) 311
BstMAI GTCTC 1 cut(s) 33
BstMWI GCNNNNNNNGC 1 cut(s) 315
BstSLI GKGCMC 2 cut(s) 209, 275
BsuRI GGCC 2 cut(s) 303, 318
BtrI CACGTC 2 cut(s) 128, 172
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 2 cut(s) 95, 304
Cac8I GCNNGC 1 cut(s) 271
CciI TCATGA 1 cut(s) 354
CfoI GCGC 1 cut(s) 311
Cfr10I RCCGGY 2 cut(s) 235, 299
Cfr13I GGNCC 1 cut(s) 339
CspAI ACCGGT 1 cut(s) 235
CviAII CATG 1 cut(s) 355
CviJI RGCY 4 cut(s) 20, 176, 303, 318
CviKI_1 RGCY 4 cut(s) 20, 176, 303, 318
DdeI CTNAG 1 cut(s) 366
EaeI YGGCCR 1 cut(s) 301
Eco47I GGWCC 1 cut(s) 339
Eco72I CACGTG 1 cut(s) 204
Esp3I CGTCTC 1 cut(s) 33
FaeI CATG 1 cut(s) 358
FaiI YATR 7 cut(s) 9, 59, 84, 112, 140, 226, 356
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FatI CATG 1 cut(s) 354
FauI CCCGC 1 cut(s) 262
FblI GTMKAC 2 cut(s) 24, 124
FspBI CTAG 1 cut(s) 242
GlaI GCGC 1 cut(s) 310
GsuI CTGGAG 1 cut(s) 333
HaeIII GGCC 2 cut(s) 303, 318
HapII CCGG 3 cut(s) 65, 236, 300
HhaI GCGC 1 cut(s) 311
Hin1II CATG 1 cut(s) 358
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HincII GTYRAC 2 cut(s) 125, 334
HindII GTYRAC 2 cut(s) 125, 334
HinfI GANTC 2 cut(s) 230, 358
HpaI GTTAAC 1 cut(s) 334
HpaII CCGG 3 cut(s) 65, 236, 300
HphI GGTGA 2 cut(s) 225, 289
Hpy166II GTNNAC 4 cut(s) 25, 125, 207, 334
Hpy188III TCNNGA 3 cut(s) 65, 242, 355
Hpy8I GTNNAC 4 cut(s) 25, 125, 207, 334
Hpy99I CGWCG 1 cut(s) 129
HpyAV CCTTC 1 cut(s) 304
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4IV ACGT 4 cut(s) 80, 127, 171, 203
HpyCH4V TGCA 2 cut(s) 86, 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 315
HpyF3I CTNAG 1 cut(s) 366
HpySE526I ACGT 4 cut(s) 80, 127, 171, 203
Hsp92II CATG 1 cut(s) 358
HspAI GCGC 1 cut(s) 309
Kpn2I TCCGGA 1 cut(s) 64
KspAI GTTAAC 1 cut(s) 334
LpnPI CCDG 8 cut(s) 76, 78, 83, 168, 249, 313, 322, 363
MaeI CTAG 1 cut(s) 242
MaeII ACGT 4 cut(s) 80, 127, 171, 203
MaeIII GTNAC 4 cut(s) 3, 93, 181, 250
MhlI GDGCHC 2 cut(s) 209, 275
MlyI GAGTC 1 cut(s) 352
MmeI TCCRAC 2 cut(s) 16, 32
MnlI CCTC 2 cut(s) 72, 184
MroI TCCGGA 1 cut(s) 64
MseI TTAA 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 269
MspI CCGG 3 cut(s) 65, 236, 300
MwoI GCNNNNNNNGC 1 cut(s) 315
NlaIII CATG 1 cut(s) 358
NlaIV GGNNCC 2 cut(s) 73, 292
NmeAIII GCCGAG 1 cut(s) 131
NmuCI GTSAC 2 cut(s) 93, 181
PagI TCATGA 1 cut(s) 354
PfeI GAWTC 1 cut(s) 230
PinAI ACCGGT 1 cut(s) 235
PleI GAGTC 1 cut(s) 352
PmaCI CACGTG 1 cut(s) 204
PmlI CACGTG 1 cut(s) 204
PpsI GAGTC 1 cut(s) 352
Ppu21I YACGTR 2 cut(s) 81, 204
PspCI CACGTG 1 cut(s) 204
PspN4I GGNNCC 2 cut(s) 73, 292
PspPI GGNCC 1 cut(s) 339
SalI GTCGAC 1 cut(s) 123
SaqAI TTAA 1 cut(s) 333
Sau96I GGNCC 1 cut(s) 339
SchI GAGTC 1 cut(s) 352
SduI GDGCHC 2 cut(s) 209, 275
SetI ASST 7 cut(s) 64, 83, 130, 174, 206, 296, 327
SinI GGWCC 1 cut(s) 339
SsiI CCGC 2 cut(s) 221, 269
SspMI CTAG 1 cut(s) 242
TaaI ACNGT 1 cut(s) 71
TaiI ACGT 4 cut(s) 83, 130, 174, 206
TaqI TCGA 2 cut(s) 124, 198
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 2 cut(s) 102, 311
TseFI GTSAC 2 cut(s) 93, 181
Tsp45I GTSAC 2 cut(s) 93, 181
TspDTI ATGAA 2 cut(s) 261, 274
TspRI CASTG 2 cut(s) 102, 311
VneI GTGCAC 1 cut(s) 205
VpaK11BI GGWCC 1 cut(s) 339
XbaI TCTAGA 1 cut(s) 241
XmiI GTMKAC 2 cut(s) 24, 124
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.