FvH4_1g02930

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013579
Physical Location & Seq
Forward (+)
1658039 .. 1658955
917 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02930.t1

Sequence Viewer

Length: 369 bp
ATGGTGAAGATCATGAATGCTTTAGTCGCTGTTATAGCACTAGCAGCGATGTTACATAGAACAGAAGCCGAAGACTACACAGTCGGAGACGACTTGGGTTGGACTATACCTCCTGACGGTGCCGATACTTATGCAGAGTGGGCTGCCGAGCATACCCCCCTTGTAGTTGACGAAGATACCATAACATTTGATTTTCCAGTAGGAGAACAAGACGTGGCTTTTGTGACGAAGCAGGATTTCGACTCGTGCACCACCACAAATCCGCTATGGCAGTCATCAGAGCCGGCTAGAGTTACACTTGTTCAAGAAGGCACATTTTACTTCATTGGCACCTTGGCCGGCCACTGCGCCAAAGGCCAAAAGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

123

Amino Acids

13.33

Weight (kDa)

4.18

Isoelectric Point (pI)

35.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 120 1.2e-12 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013579)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02920 FvH4_1g02930 FvH4_1g02980
malus_domestica MD02G1029200.v1.1 MD15G1170700.v1.1
prunus_persica Prupe.7G245700_v2.0.a1
pyrus_communis pycom15g15210
rosa_chinensis RchiOBHm_Chr2g0088121
rosa_laevigata RLG00000015923 RLG00000035302
rosa_multiflora Rmu_sc0003275.1_g000046
rosa_roxburghii Rroxscaffold_2G00152950
rosa_rugosa Rorug01G0481300
rosa_samantha Rh2AG036000 Rh2BG034500 Rh2BG035200 Rh2CG036400
rosa_wichuraiana Rw2G002830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 80
AccB1I GGYRCC 2 cut(s) 119, 329
AciI CCGC 1 cut(s) 263
AcoI YGGCCR 2 cut(s) 336, 340
AfiI CCNNNNNNNGG 1 cut(s) 116
AgsI TTSAA 1 cut(s) 305
AjiI CACGTC 1 cut(s) 214
Alw21I GWGCWC 1 cut(s) 251
Alw26I GTCTC 1 cut(s) 81
Alw44I GTGCAC 1 cut(s) 247
AoxI GGCC 3 cut(s) 336, 340, 355
ApaLI GTGCAC 1 cut(s) 247
ApeKI GCWGC 2 cut(s) 44, 143
ArsI GACNNNNNNTTYG 2 cut(s) 203, 235
AspLEI GCGC 1 cut(s) 350
AsuHPI GGTGA 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 251
BanI GGYRCC 2 cut(s) 119, 329
BauI CACGAG 1 cut(s) 244
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 251
BbvI GCAGC 2 cut(s) 56, 130
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 2 cut(s) 41, 288
BisI GCNGC 2 cut(s) 45, 144
BlsI GCNGC 2 cut(s) 46, 145
BmgBI CACGTC 1 cut(s) 214
BmiI GGNNCC 2 cut(s) 121, 331
BpiI GAAGAC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 333
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bsc4I CCNNNNNNNGG 1 cut(s) 116
Bse118I RCCGGY 2 cut(s) 283, 338
Bse1I ACTGG 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 333
BseLI CCNNNNNNNGG 1 cut(s) 116
BseNI ACTGG 1 cut(s) 197
BseSI GKGCMC 1 cut(s) 251
BseXI GCAGC 2 cut(s) 56, 130
BshFI GGCC 3 cut(s) 338, 342, 357
BshNI GGYRCC 2 cut(s) 119, 329
BsiHKAI GWGCWC 1 cut(s) 251
BsiSI CCGG 2 cut(s) 284, 339
BslI CCNNNNNNNGG 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 81
BsmBI CGTCTC 1 cut(s) 81
BsmI GAATGC 1 cut(s) 22
BsnI GGCC 3 cut(s) 338, 342, 357
Bsp1286I GDGCHC 1 cut(s) 251
Bsp143I GATC 1 cut(s) 9
BspACI CCGC 1 cut(s) 263
BspANI GGCC 3 cut(s) 338, 342, 357
BspHI TCATGA 1 cut(s) 12
BspLI GGNNCC 2 cut(s) 121, 331
BspT107I GGYRCC 2 cut(s) 119, 329
BsrFI RCCGGY 2 cut(s) 283, 338
BsrI ACTGG 1 cut(s) 197
BssAI RCCGGY 2 cut(s) 283, 338
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 1 cut(s) 9
BssSI CACGAG 1 cut(s) 244
BssT1I CCWWGG 1 cut(s) 333
Bst2BI CACGAG 1 cut(s) 244
Bst4CI ACNGT 2 cut(s) 82, 119
BstC8I GCNNGC 2 cut(s) 285, 340
BstHHI GCGC 1 cut(s) 350
BstKTI GATC 1 cut(s) 12
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 5 cut(s) 26, 35, 44, 140, 354
BstSLI GKGCMC 1 cut(s) 251
BstV1I GCAGC 2 cut(s) 56, 130
BstV2I GAAGAC 1 cut(s) 78
BsuRI GGCC 3 cut(s) 338, 342, 357
BtgZI GCGATG 1 cut(s) 62
BtrI CACGTC 1 cut(s) 214
BtsI GCAGTG 1 cut(s) 343
BtsIMutI CAGTG 1 cut(s) 343
Cac8I GCNNGC 2 cut(s) 285, 340
CciI TCATGA 1 cut(s) 12
CfoI GCGC 1 cut(s) 350
Cfr10I RCCGGY 2 cut(s) 283, 338
CviAII CATG 1 cut(s) 13
CviJI RGCY 8 cut(s) 68, 143, 218, 283, 287, 338, 342, 357
CviKI_1 RGCY 8 cut(s) 68, 143, 218, 283, 287, 338, 342, 357
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
EaeI YGGCCR 2 cut(s) 336, 340
Eco130I CCWWGG 1 cut(s) 333
EcoT14I CCWWGG 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 333
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 1 cut(s) 16
FaiI YATR 8 cut(s) 14, 35, 57, 107, 132, 153, 182, 268
FatI CATG 1 cut(s) 12
Fnu4HI GCNGC 2 cut(s) 45, 144
FseI GGCCGGCC 1 cut(s) 342
Fsp4HI GCNGC 2 cut(s) 45, 144
FspBI CTAG 2 cut(s) 41, 288
GlaI GCGC 1 cut(s) 349
GluI GCNGC 2 cut(s) 45, 144
HaeIII GGCC 3 cut(s) 338, 342, 357
HapII CCGG 2 cut(s) 284, 339
HhaI GCGC 1 cut(s) 350
Hin1II CATG 1 cut(s) 16
Hin6I GCGC 1 cut(s) 348
HinP1I GCGC 1 cut(s) 348
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 1 cut(s) 242
HpaII CCGG 2 cut(s) 284, 339
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 169, 249
Hpy188I TCNGA 2 cut(s) 86, 280
Hpy188III TCNNGA 3 cut(s) 13, 113, 305
Hpy8I GTNNAC 2 cut(s) 169, 249
HpyAV CCTTC 1 cut(s) 302
HpyCH4III ACNGT 2 cut(s) 82, 119
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 2 cut(s) 134, 249
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 35, 44, 140, 354
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 1 cut(s) 16
HspAI GCGC 1 cut(s) 348
KroI GCCGGC 2 cut(s) 283, 338
KroNI GCCGGC 2 cut(s) 285, 340
Kzo9I GATC 1 cut(s) 9
LpnPI CCDG 5 cut(s) 126, 210, 218, 297, 352
Lsp1109I GCAGC 2 cut(s) 56, 130
MaeI CTAG 2 cut(s) 41, 288
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 3 cut(s) 51, 223, 292
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 3 cut(s) 19, 83, 185
MhlI GDGCHC 1 cut(s) 251
MlyI GAGTC 1 cut(s) 236
MmeI TCCRAC 2 cut(s) 64, 80
MnlI CCTC 1 cut(s) 120
MroNI GCCGGC 2 cut(s) 283, 338
MspI CCGG 2 cut(s) 284, 339
Mva1269I GAATGC 1 cut(s) 22
MwoI GCNNNNNNNGC 5 cut(s) 26, 35, 44, 140, 354
NaeI GCCGGC 2 cut(s) 285, 340
NdeII GATC 1 cut(s) 9
NgoMIV GCCGGC 2 cut(s) 283, 338
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 2 cut(s) 121, 331
NmeAIII GCCGAG 1 cut(s) 172
NmuCI GTSAC 1 cut(s) 223
PagI TCATGA 1 cut(s) 12
PctI GAATGC 1 cut(s) 22
PdiI GCCGGC 2 cut(s) 285, 340
PkrI GCNGC 2 cut(s) 46, 145
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
PspN4I GGNNCC 2 cut(s) 121, 331
RigI GGCCGGCC 1 cut(s) 342
SatI GCNGC 2 cut(s) 45, 144
Sau3AI GATC 1 cut(s) 9
SchI GAGTC 1 cut(s) 236
SduI GDGCHC 1 cut(s) 251
SetI ASST 3 cut(s) 112, 216, 335
SsiI CCGC 1 cut(s) 263
SspMI CTAG 2 cut(s) 41, 288
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 2 cut(s) 82, 119
TaiI ACGT 1 cut(s) 216
TaqI TCGA 1 cut(s) 240
TscAI CASTG 1 cut(s) 350
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 2 cut(s) 44, 143
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 2 cut(s) 29, 313
TspRI CASTG 1 cut(s) 350
VneI GTGCAC 1 cut(s) 247
XspI CTAG 2 cut(s) 41, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.