Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0013579

Physical Location & Seq

Genomic Coordinates Reverse (-)

64611131 .. 64612143

Gene Structure 1013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035302

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTGTTGGATTAGCGAAATTCCAAAGAGAACATCCCTCCAATGCAAGTACGAAGGACCAGCCAGATACACTCTCAGTGCCACCGGTGGTCACTATTTCATCTGCCTCTTCCCTGACAACTGTGACCAAGGACAGAAGTTAACAATCGCCGTAACAACTGGCCATTCCGGCTCTGCGCCTACGCCTGCTCCTACCCCTAGTAGTACTAGTACTCCTCCTTCCAAGTACGAATCTCCTCCTCGTGGAGCTGAATGTCCTCCTCCTTCAACATCGCCACCACCGAGCACATCACGCACTAAAGCACCACTGCAAGAGAGCTCGACAGGCAGCTCTTCTCATGTTGTCACCATTTCTACTGTTTTCATGTCCATTTCCATGGCTCTTTTCTGCCTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0015690 GO:0016020 GO:0019222 GO:0030001 GO:0031224 GO:0031225 GO:0031226 GO:0031323 GO:0031326 GO:0033554 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070417 GO:0071944 GO:0072512 GO:1900376 GO:1901141 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

133

Amino Acids

13.96

Weight (kDa)

8.25

Isoelectric Point (pI)

71.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013579)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02920 FvH4_1g02930 FvH4_1g02980
malus_domestica	MD02G1029200.v1.1 MD15G1170700.v1.1
prunus_persica	Prupe.7G245700_v2.0.a1
pyrus_communis	pycom15g15210
rosa_chinensis	RchiOBHm_Chr2g0088121
rosa_laevigata	RLG00000015923 RLG00000035302
rosa_multiflora	Rmu_sc0003275.1_g000046
rosa_roxburghii	Rroxscaffold_2G00152950
rosa_rugosa	Rorug01G0481300
rosa_samantha	Rh2AG036000 Rh2BG034500 Rh2BG035200 Rh2CG036400
rosa_wichuraiana	Rw2G002830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	160
AcsI	RAATTY	1 cut(s)	18
AfaI	GTAC	4 cut(s)	50, 205, 211, 227
AfiI	CCNNNNNNNGG	1 cut(s)	242
AgeI	ACCGGT	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	267
AhlI	ACTAGT	1 cut(s)	206
AluBI	AGCT	3 cut(s)	248, 318, 330
AluI	AGCT	3 cut(s)	248, 318, 330
Alw21I	GWGCWC	2 cut(s)	287, 320
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	1 cut(s)	327
ApoI	RAATTY	1 cut(s)	18
AsiGI	ACCGGT	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	337
AvaII	GGWCC	1 cut(s)	56
BalI	TGGCCA	1 cut(s)	162
BanII	GRGCYC	1 cut(s)	320
BarI	GAAGNNNNNNTAC	2 cut(s)	202, 234
BauI	CACGAG	1 cut(s)	240
Bbv12I	GWGCWC	2 cut(s)	287, 320
BbvI	GCAGC	1 cut(s)	339
BceAI	ACGGC	1 cut(s)	134
BcuI	ACTAGT	1 cut(s)	206
BfaI	CTAG	3 cut(s)	198, 207, 397
BglI	GCCNNNNNGGC	1 cut(s)	168
BisI	GCNGC	1 cut(s)	328
BlsI	GCNGC	1 cut(s)	329
BmcAI	AGTACT	2 cut(s)	205, 211
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	127, 375
BsaWI	WCCGGW	1 cut(s)	83
BsaXI	ACNNNNNCTCC	4 cut(s)	172, 196, 202, 226
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	163
BseDI	CCNNGG	2 cut(s)	127, 375
BseGI	GGATG	1 cut(s)	32
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseMII	CTCAG	1 cut(s)	88
BseNI	ACTGG	1 cut(s)	163
BseRI	GAGGAG	4 cut(s)	204, 225, 228, 249
BseXI	GCAGC	1 cut(s)	339
BshFI	GGCC	1 cut(s)	162
BshTI	ACCGGT	1 cut(s)	83
BsiHKAI	GWGCWC	2 cut(s)	287, 320
BsiSI	CCGG	2 cut(s)	84, 168
BslI	CCNNNNNNNGG	1 cut(s)	242
BsnI	GGCC	1 cut(s)	162
Bsp1286I	GDGCHC	2 cut(s)	287, 320
Bsp19I	CCATGG	1 cut(s)	375
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	1 cut(s)	87
BspQI	GCTCTTC	1 cut(s)	337
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	163
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	2 cut(s)	127, 375
BssSI	CACGAG	1 cut(s)	240
BssT1I	CCWWGG	2 cut(s)	127, 375
Bst2BI	CACGAG	1 cut(s)	240
Bst4CI	ACNGT	2 cut(s)	122, 358
Bst6I	CTCTTC	2 cut(s)	113, 337
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	1 cut(s)	74
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	3 cut(s)	168, 291, 324
BstV1I	GCAGC	1 cut(s)	339
BstXI	CCANNNNNNTGG	1 cut(s)	376
BsuRI	GGCC	1 cut(s)	162
BtgI	CCRYGG	1 cut(s)	375
BtgZI	GCGATG	1 cut(s)	255
BtsCI	GGATG	1 cut(s)	32
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	2 cut(s)	82, 305
Cac8I	GCNNGC	1 cut(s)	186
CfoI	GCGC	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	56
Csp6I	GTAC	4 cut(s)	49, 204, 210, 226
CspAI	ACCGGT	1 cut(s)	83
CviAII	CATG	3 cut(s)	338, 364, 376
CviJI	RGCY	7 cut(s)	62, 162, 171, 248, 318, 330, 380
CviKI_1	RGCY	7 cut(s)	62, 162, 171, 248, 318, 330, 380
CviQI	GTAC	4 cut(s)	49, 204, 210, 226
DdeI	CTNAG	1 cut(s)	74
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	2 cut(s)	113, 337
EarI	CTCTTC	2 cut(s)	113, 337
Ecl136II	GAGCTC	1 cut(s)	318
Eco130I	CCWWGG	2 cut(s)	127, 375
Eco24I	GRGCYC	1 cut(s)	320
Eco47I	GGWCC	1 cut(s)	56
Eco53kI	GAGCTC	1 cut(s)	318
EcoICRI	GAGCTC	1 cut(s)	318
EcoT14I	CCWWGG	2 cut(s)	127, 375
EcoT38I	GRGCYC	1 cut(s)	320
ErhI	CCWWGG	2 cut(s)	127, 375
FaeI	CATG	3 cut(s)	341, 367, 379
FaiI	YATR	3 cut(s)	339, 365, 377
FatI	CATG	3 cut(s)	337, 363, 375
Fnu4HI	GCNGC	1 cut(s)	328
FokI	GGATG	1 cut(s)	19
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	1 cut(s)	328
FspBI	CTAG	3 cut(s)	198, 207, 397
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	328
HaeIII	GGCC	1 cut(s)	162
HapII	CCGG	2 cut(s)	84, 168
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	3 cut(s)	341, 367, 379
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HinfI	GANTC	1 cut(s)	230
HpaI	GTTAAC	1 cut(s)	141
HpaII	CCGG	2 cut(s)	84, 168
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	1 cut(s)	141
Hpy8I	GTNNAC	1 cut(s)	141
HpyAV	CCTTC	3 cut(s)	47, 228, 273
HpyCH4III	ACNGT	2 cut(s)	122, 358
HpyCH4V	TGCA	2 cut(s)	45, 310
HpyF10VI	GCNNNNNNNGC	3 cut(s)	168, 291, 324
HpyF3I	CTNAG	1 cut(s)	74
Hsp92II	CATG	3 cut(s)	341, 367, 379
HspAI	GCGC	1 cut(s)	176
KspAI	GTTAAC	1 cut(s)	141
LguI	GCTCTTC	1 cut(s)	337
LmnI	GCTCC	2 cut(s)	193, 245
LpnPI	CCDG	8 cut(s)	72, 76, 97, 126, 144, 181, 198, 309
Lsp1109I	GCAGC	1 cut(s)	339
MaeI	CTAG	3 cut(s)	198, 207, 397
MaeIII	GTNAC	4 cut(s)	89, 122, 151, 343
MboII	GAAGA	3 cut(s)	100, 324, 385
MhlI	GDGCHC	2 cut(s)	287, 320
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	1 cut(s)	18
MluNI	TGGCCA	1 cut(s)	162
MnlI	CCTC	7 cut(s)	47, 116, 225, 246, 249, 267, 270
Mox20I	TGGCCA	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	1 cut(s)	140
MslI	CAYNNNNRTG	1 cut(s)	374
Msp20I	TGGCCA	1 cut(s)	162
MspI	CCGG	2 cut(s)	84, 168
MwoI	GCNNNNNNNGC	3 cut(s)	168, 291, 324
NcoI	CCATGG	1 cut(s)	375
NlaIII	CATG	3 cut(s)	341, 367, 379
NmuCI	GTSAC	3 cut(s)	89, 122, 343
PciSI	GCTCTTC	1 cut(s)	337
PcsI	WCGNNNNNNNCGW	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	230
PinAI	ACCGGT	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	329
Psp124BI	GAGCTC	1 cut(s)	320
PspPI	GGNCC	1 cut(s)	56
RsaI	GTAC	4 cut(s)	50, 205, 211, 227
RsaNI	GTAC	4 cut(s)	49, 204, 210, 226
RseI	CAYNNNNRTG	1 cut(s)	374
SacI	GAGCTC	1 cut(s)	320
SapI	GCTCTTC	1 cut(s)	337
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	1 cut(s)	328
Sau96I	GGNCC	1 cut(s)	56
ScaI	AGTACT	2 cut(s)	205, 211
SduI	GDGCHC	2 cut(s)	287, 320
SetI	ASST	3 cut(s)	250, 320, 332
SgrAI	CRCCGGYG	1 cut(s)	83
SinI	GGWCC	1 cut(s)	56
SmiMI	CAYNNNNRTG	1 cut(s)	374
SpeI	ACTAGT	1 cut(s)	206
Sse9I	AATT	1 cut(s)	18
SspMI	CTAG	3 cut(s)	198, 207, 397
SstI	GAGCTC	1 cut(s)	320
StyI	CCWWGG	2 cut(s)	127, 375
TaaI	ACNGT	2 cut(s)	122, 358
TaqI	TCGA	1 cut(s)	320
TasI	AATT	1 cut(s)	18
TatI	WGTACW	2 cut(s)	203, 209
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	2 cut(s)	82, 312
TseFI	GTSAC	3 cut(s)	89, 122, 343
TseI	GCWGC	1 cut(s)	327
Tsp45I	GTSAC	3 cut(s)	89, 122, 343
TspDTI	ATGAA	2 cut(s)	88, 352
TspRI	CASTG	2 cut(s)	82, 312
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	1 cut(s)	18
XspI	CTAG	3 cut(s)	198, 207, 397
ZrmI	AGTACT	2 cut(s)	205, 211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.