Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0013579

Physical Location & Seq

Genomic Coordinates Reverse (-)

1678821 .. 1679507

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGGGCCTAAGATACTTAGTTCGACTACCTTTGTGTTCACAATTGTTATAGCTCTAGCAGCTGTGCTGCAAACCGCAGAAGCTGAAACGCACACAGTGAGTTGGAGTAACACAGTTGGAGCCGACTTCTATACTTCCTGGGCTGCCAATCATACCTTCAAAGTTGGCGATGTTCTAGTGTTCGATTTCACAACAGGACGACATGATGTAGCTGAACTATCAAAGGATGCTTATGAAAAGTGCAACGTCACTGGCTTCATCAGCAGCCCCAAGAGCGAAGGACCAGCCAACTACACCCTCAGCGCCACCGGTGATCACTACTTCATCTGCCGCTTCCCTGAGCACTGTGACCAAGGAGGACAGAAGTTAACAATCGCTGTCACTGGCGATTCCGGCTCTGCACCTAGGCCTGCTCCTGCCCCTAGCAGTACTAGTACTCCTCCTCCTTCCAAGTCTGAATCTCCTCCCCCTTCAACATCGCCACCACCGAGCACGTCAAGCACTACAGCACCACCGCCAGAGGGCTCGACAGGCAGCTCTTCTCATGTTCTCACCATTTCTACTGTGTTCATGTCTATTGCCATAGCTCTTTTCTGCCTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0015690 GO:0016020 GO:0019222 GO:0030001 GO:0031224 GO:0031225 GO:0031226 GO:0031323 GO:0031326 GO:0033554 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070417 GO:0071944 GO:0072512 GO:1900376 GO:1901141 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

202

Amino Acids

20.96

Weight (kDa)

5.38

Isoelectric Point (pI)

50.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	38 - 119	1.4e-21	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013579)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02920 FvH4_1g02930 FvH4_1g02980
malus_domestica	MD02G1029200.v1.1 MD15G1170700.v1.1
prunus_persica	Prupe.7G245700_v2.0.a1
pyrus_communis	pycom15g15210
rosa_chinensis	RchiOBHm_Chr2g0088121
rosa_laevigata	RLG00000015923 RLG00000035302
rosa_multiflora	Rmu_sc0003275.1_g000046
rosa_roxburghii	Rroxscaffold_2G00152950
rosa_rugosa	Rorug01G0481300
rosa_samantha	Rh2AG036000 Rh2BG034500 Rh2BG035200 Rh2CG036400
rosa_wichuraiana	Rw2G002830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	75, 331, 515
AdeI	CACNNNGTG	1 cut(s)	97
AfaI	GTAC	2 cut(s)	430, 436
AfiI	CCNNNNNNNGG	1 cut(s)	521
AgeI	ACCGGT	1 cut(s)	308
AgsI	TTSAA	2 cut(s)	160, 474
AhlI	ACTAGT	1 cut(s)	431
AjiI	CACGTC	1 cut(s)	495
AjnI	CCWGG	1 cut(s)	137
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	6 cut(s)	53, 62, 83, 212, 537, 587
AluI	AGCT	6 cut(s)	53, 62, 83, 212, 537, 587
Alw21I	GWGCWC	2 cut(s)	345, 494
AlwNI	CAGNNNCTG	1 cut(s)	83
AoxI	GGCC	2 cut(s)	5, 407
ApeKI	GCWGC	5 cut(s)	59, 67, 143, 264, 534
AsiGI	ACCGGT	1 cut(s)	308
AspA2I	CCTAGG	1 cut(s)	404
AspLEI	GCGC	1 cut(s)	305
AspS9I	GGNCC	2 cut(s)	5, 281
AsuHPI	GGTGA	2 cut(s)	323, 544
AvaII	GGWCC	1 cut(s)	281
AvrII	CCTAGG	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	527
Bbv12I	GWGCWC	2 cut(s)	345, 494
BbvCI	CCTCAGC	1 cut(s)	299
BbvI	GCAGC	5 cut(s)	54, 71, 130, 276, 546
BciT130I	CCWGG	1 cut(s)	139
BclI	TGATCA	1 cut(s)	313
BcuI	ACTAGT	1 cut(s)	431
BfaI	CTAG	6 cut(s)	56, 176, 405, 423, 432, 604
BfmI	CTRYAG	1 cut(s)	504
BfoI	RGCGCY	1 cut(s)	306
BisI	GCNGC	6 cut(s)	60, 68, 144, 265, 331, 535
BlnI	CCTAGG	1 cut(s)	404
BlsI	GCNGC	6 cut(s)	61, 69, 145, 266, 332, 536
BmcAI	AGTACT	2 cut(s)	430, 436
Bme1390I	CCNGG	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	281
BmgBI	CACGTC	1 cut(s)	495
BmgT120I	GGNCC	2 cut(s)	5, 281
BmiI	GGNNCC	2 cut(s)	6, 121
BmrFI	CCNGG	1 cut(s)	139
BmsI	GCATC	1 cut(s)	217
Bpu10I	CCTNAGC	2 cut(s)	299, 339
BsaJI	CCNNGG	3 cut(s)	138, 352, 404
BsaWI	WCCGGW	1 cut(s)	308
BsaXI	ACNNNNNCTCC	4 cut(s)	421, 427, 451, 457
Bsc4I	CCNNNNNNNGG	1 cut(s)	521
Bse118I	RCCGGY	1 cut(s)	308
Bse1I	ACTGG	2 cut(s)	256, 388
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	3 cut(s)	138, 352, 404
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	521
BseMII	CTCAG	2 cut(s)	313, 330
BseNI	ACTGG	2 cut(s)	256, 388
BseRI	GAGGAG	4 cut(s)	429, 432, 453, 590
BseXI	GCAGC	5 cut(s)	54, 71, 130, 276, 546
BsgI	GTGCAG	1 cut(s)	384
BshFI	GGCC	2 cut(s)	7, 409
BshTI	ACCGGT	1 cut(s)	308
BsiHKAI	GWGCWC	2 cut(s)	345, 494
BsiSI	CCGG	2 cut(s)	309, 393
BslI	CCNNNNNNNGG	1 cut(s)	521
BsnI	GGCC	2 cut(s)	7, 409
Bsp1286I	GDGCHC	3 cut(s)	345, 494, 527
Bsp143I	GATC	1 cut(s)	313
BspACI	CCGC	3 cut(s)	75, 331, 515
BspANI	GGCC	2 cut(s)	7, 409
BspCNI	CTCAG	2 cut(s)	312, 331
BspLI	GGNNCC	2 cut(s)	6, 121
BspQI	GCTCTTC	1 cut(s)	544
BsrFI	RCCGGY	1 cut(s)	308
BsrI	ACTGG	2 cut(s)	256, 388
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	3 cut(s)	138, 352, 404
BssMI	GATC	1 cut(s)	313
BssT1I	CCWWGG	2 cut(s)	352, 404
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	4 cut(s)	97, 115, 347, 565
Bst6I	CTCTTC	1 cut(s)	544
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	4 cut(s)	9, 17, 299, 339
BstF5I	GGATG	1 cut(s)	232
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	1 cut(s)	316
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 261, 273, 393, 498, 531
BstNI	CCWGG	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	137
BstSFI	CTRYAG	1 cut(s)	504
BstV1I	GCAGC	5 cut(s)	54, 71, 130, 276, 546
BsuRI	GGCC	2 cut(s)	7, 409
BtgZI	GCGATG	2 cut(s)	183, 462
BtrI	CACGTC	1 cut(s)	495
BtsCI	GGATG	1 cut(s)	232
BtsIMutI	CAGTG	4 cut(s)	102, 249, 343, 381
Cac8I	GCNNGC	1 cut(s)	411
CaiI	CAGNNNCTG	1 cut(s)	83
CfoI	GCGC	1 cut(s)	305
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	2 cut(s)	5, 281
Csp6I	GTAC	2 cut(s)	429, 435
CspAI	ACCGGT	1 cut(s)	308
CviAII	CATG	3 cut(s)	203, 545, 571
CviQI	GTAC	2 cut(s)	429, 435
DdeI	CTNAG	4 cut(s)	9, 17, 299, 339
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
DraIII	CACNNNGTG	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	544
EarI	CTCTTC	1 cut(s)	544
Eco130I	CCWWGG	2 cut(s)	352, 404
Eco147I	AGGCCT	1 cut(s)	409
Eco24I	GRGCYC	1 cut(s)	527
Eco47I	GGWCC	1 cut(s)	281
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	137
EcoT14I	CCWWGG	2 cut(s)	352, 404
EcoT38I	GRGCYC	1 cut(s)	527
ErhI	CCWWGG	2 cut(s)	352, 404
FaeI	CATG	3 cut(s)	206, 548, 574
FaiI	YATR	8 cut(s)	50, 132, 153, 204, 234, 546, 572, 584
FatI	CATG	3 cut(s)	202, 544, 570
FbaI	TGATCA	1 cut(s)	313
Fnu4HI	GCNGC	6 cut(s)	60, 68, 144, 265, 331, 535
FokI	GGATG	1 cut(s)	239
FriOI	GRGCYC	1 cut(s)	527
Fsp4HI	GCNGC	6 cut(s)	60, 68, 144, 265, 331, 535
FspBI	CTAG	6 cut(s)	56, 176, 405, 423, 432, 604
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	6 cut(s)	60, 68, 144, 265, 331, 535
HaeII	RGCGCY	1 cut(s)	306
HaeIII	GGCC	2 cut(s)	7, 409
HapII	CCGG	2 cut(s)	309, 393
HhaI	GCGC	1 cut(s)	305
Hin1II	CATG	3 cut(s)	206, 548, 574
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HincII	GTYRAC	1 cut(s)	369
HindII	GTYRAC	1 cut(s)	369
HinfI	GANTC	2 cut(s)	389, 458
HpaI	GTTAAC	1 cut(s)	369
HpaII	CCGG	2 cut(s)	309, 393
HphI	GGTGA	2 cut(s)	323, 544
Hpy166II	GTNNAC	2 cut(s)	39, 369
Hpy188I	TCNGA	1 cut(s)	457
Hpy8I	GTNNAC	2 cut(s)	39, 369
HpyAV	CCTTC	4 cut(s)	166, 272, 456, 480
HpyCH4III	ACNGT	4 cut(s)	97, 115, 347, 565
HpyCH4IV	ACGT	2 cut(s)	246, 494
HpyCH4V	TGCA	3 cut(s)	70, 243, 401
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 261, 273, 393, 498, 531
HpyF3I	CTNAG	4 cut(s)	9, 17, 299, 339
HpySE526I	ACGT	2 cut(s)	246, 494
Hsp92II	CATG	3 cut(s)	206, 548, 574
HspAI	GCGC	1 cut(s)	303
Ksp22I	TGATCA	1 cut(s)	313
KspAI	GTTAAC	1 cut(s)	369
Kzo9I	GATC	1 cut(s)	313
LguI	GCTCTTC	1 cut(s)	544
LmnI	GCTCC	2 cut(s)	119, 418
Lsp1109I	GCAGC	5 cut(s)	54, 71, 130, 276, 546
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	6 cut(s)	56, 176, 405, 423, 432, 604
MaeII	ACGT	2 cut(s)	246, 494
MaeIII	GTNAC	4 cut(s)	107, 247, 347, 379
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MboII	GAAGA	1 cut(s)	531
MfeI	CAATTG	1 cut(s)	42
MhlI	GDGCHC	3 cut(s)	345, 494, 527
MluCI	AATT	1 cut(s)	42
MmeI	TCCRAC	2 cut(s)	83, 97
MnlI	CCTC	6 cut(s)	308, 350, 450, 453, 474, 514
MseI	TTAA	1 cut(s)	368
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	2 cut(s)	309, 393
MspR9I	CCNGG	1 cut(s)	139
MunI	CAATTG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	6 cut(s)	59, 261, 273, 393, 498, 531
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	3 cut(s)	206, 548, 574
NlaIV	GGNNCC	2 cut(s)	6, 121
NmuCI	GTSAC	3 cut(s)	247, 347, 379
PceI	AGGCCT	1 cut(s)	409
PciSI	GCTCTTC	1 cut(s)	544
PcsI	WCGNNNNNNNCGW	1 cut(s)	485
PfeI	GAWTC	2 cut(s)	389, 458
PinAI	ACCGGT	1 cut(s)	308
PkrI	GCNGC	6 cut(s)	61, 69, 145, 266, 332, 536
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	2 cut(s)	6, 121
PspPI	GGNCC	2 cut(s)	5, 281
PstNI	CAGNNNCTG	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	2 cut(s)	430, 436
RsaNI	GTAC	2 cut(s)	429, 435
SapI	GCTCTTC	1 cut(s)	544
SaqAI	TTAA	1 cut(s)	368
SatI	GCNGC	6 cut(s)	60, 68, 144, 265, 331, 535
Sau3AI	GATC	1 cut(s)	313
Sau96I	GGNCC	2 cut(s)	5, 281
ScaI	AGTACT	2 cut(s)	430, 436
ScrFI	CCNGG	1 cut(s)	139
SduI	GDGCHC	3 cut(s)	345, 494, 527
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	1 cut(s)	504
SgrAI	CRCCGGYG	1 cut(s)	308
SinI	GGWCC	1 cut(s)	281
SpeI	ACTAGT	1 cut(s)	431
Sse9I	AATT	1 cut(s)	42
SseBI	AGGCCT	1 cut(s)	409
SsiI	CCGC	3 cut(s)	75, 331, 515
SspMI	CTAG	6 cut(s)	56, 176, 405, 423, 432, 604
StuI	AGGCCT	1 cut(s)	409
StyD4I	CCNGG	1 cut(s)	137
StyI	CCWWGG	2 cut(s)	352, 404
TaaI	ACNGT	4 cut(s)	97, 115, 347, 565
TaiI	ACGT	2 cut(s)	249, 497
TaqI	TCGA	3 cut(s)	23, 183, 527
TasI	AATT	1 cut(s)	42
TatI	WGTACW	2 cut(s)	428, 434
TauI	GCSGC	1 cut(s)	333
TfiI	GAWTC	2 cut(s)	389, 458
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TscAI	CASTG	4 cut(s)	102, 256, 350, 388
TseFI	GTSAC	3 cut(s)	247, 347, 379
TseI	GCWGC	5 cut(s)	59, 67, 143, 264, 534
Tsp45I	GTSAC	3 cut(s)	247, 347, 379
TspDTI	ATGAA	4 cut(s)	247, 249, 313, 559
TspRI	CASTG	4 cut(s)	102, 256, 350, 388
VpaK11BI	GGWCC	1 cut(s)	281
XmaJI	CCTAGG	1 cut(s)	404
XspI	CTAG	6 cut(s)	56, 176, 405, 423, 432, 604
ZrmI	AGTACT	2 cut(s)	430, 436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.