Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013579

Physical Location & Seq

Genomic Coordinates Forward (+)

89778195 .. 89785035

Gene Structure 6841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00152950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGGGCCTAAGAAACATAGTGCGACCACATCTGTGGTTGCAATTGTTATAGCTTTAGCAGCTGTGCTACAAACCGCAGAAGCTGAAACGCACAAAGTGAGTTGGAATAATACAGTTGGTGCCAACTACTATACTTCTTGGGCTGCCAATCAGACCTTCAAAGTTGGCGACCTTCTAGTGTTCAATTTCACTACTGGACGACACGACGTAGCTGAAGTTGCAAAGGATGCTTACGAAAAGTGCAACGTTACCGACCTCATCAGCAACCCTAAGTACGACGGACCAGCCAACTACACCCTCAATGCCACCGGCGATCACTACTTTATCTGCCTTTTCCCTGGACACTGTGACCAAGGACAGAAGTTGGCAATCACCGTAACAACTAGCCATTCCGGCTCTGCACCTACGCCTGCTCCTGCCCCAAGTAGTACTAGTACTCCTCCTTCCAAGTCCCAATCTCCTCCTCCTTCTGGAGCTAAATCTCCTCCTAGTTCAACATCGCCACCACCAAGCACGTCAAGCACTACAGCACCACCACCACCAAAGGGCTCCACAGGCAGCTCTTCTCATGTTGTTACCATTTCGACTGTTTTCATGTCCATTGCCAAAATGACCATTGTGTTATTTATATATAGTAATATGACTAGTCTTCTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002239 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009605 GO:0009607 GO:0009628 GO:0009642 GO:0009646 GO:0009889 GO:0009987 GO:0015690 GO:0016020 GO:0019222 GO:0030001 GO:0031224 GO:0031225 GO:0031226 GO:0031323 GO:0031326 GO:0033554 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070417 GO:0071944 GO:0072512 GO:1900376 GO:1901141 GO:2000762

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

219

Amino Acids

22.8

Weight (kDa)

8.4

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	35 - 120	1.1e-22	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013579)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02920 FvH4_1g02930 FvH4_1g02980
malus_domestica	MD02G1029200.v1.1 MD15G1170700.v1.1
prunus_persica	Prupe.7G245700_v2.0.a1
pyrus_communis	pycom15g15210
rosa_chinensis	RchiOBHm_Chr2g0088121
rosa_laevigata	RLG00000015923 RLG00000035302
rosa_multiflora	Rmu_sc0003275.1_g000046
rosa_roxburghii	Rroxscaffold_2G00152950
rosa_rugosa	Rorug01G0481300
rosa_samantha	Rh2AG036000 Rh2BG034500 Rh2BG035200 Rh2CG036400
rosa_wichuraiana	Rw2G002830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AciI	CCGC	1 cut(s)	75
AclI	AACGTT	1 cut(s)	246
AcuI	CTGAAG	1 cut(s)	234
AdeI	CACNNNGTG	1 cut(s)	97
AfaI	GTAC	3 cut(s)	275, 430, 436
AfiI	CCNNNNNNNGG	2 cut(s)	470, 545
AgsI	TTSAA	3 cut(s)	160, 184, 495
AhlI	ACTAGT	2 cut(s)	431, 644
AjiI	CACGTC	1 cut(s)	516
AjnI	CCWGG	1 cut(s)	337
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AleI	CACNNNNGTG	1 cut(s)	32
AluBI	AGCT	6 cut(s)	53, 62, 83, 212, 476, 561
AluI	AGCT	6 cut(s)	53, 62, 83, 212, 476, 561
AlwNI	CAGNNNCTG	1 cut(s)	83
AoxI	GGCC	1 cut(s)	5
ApeKI	GCWGC	3 cut(s)	59, 143, 558
AspS9I	GGNCC	2 cut(s)	5, 281
AsuHPI	GGTGA	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	551
BarI	GAAGNNNNNNTAC	2 cut(s)	427, 459
BbsI	GAAGAC	1 cut(s)	641
BbvI	GCAGC	3 cut(s)	71, 130, 570
BciT130I	CCWGG	1 cut(s)	339
BcuI	ACTAGT	2 cut(s)	431, 644
BfaI	CTAG	5 cut(s)	176, 384, 432, 489, 645
BfmI	CTRYAG	1 cut(s)	525
BglI	GCCNNNNNGGC	1 cut(s)	393
BisI	GCNGC	3 cut(s)	60, 144, 559
BlsI	GCNGC	3 cut(s)	61, 145, 560
BmcAI	AGTACT	2 cut(s)	430, 436
Bme1390I	CCNGG	1 cut(s)	339
Bme18I	GGWCC	1 cut(s)	281
BmgBI	CACGTC	1 cut(s)	516
BmgT120I	GGNCC	2 cut(s)	5, 281
BmiI	GGNNCC	3 cut(s)	6, 121, 550
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	641
BpmI	CTGGAG	1 cut(s)	492
BsaJI	CCNNGG	2 cut(s)	337, 352
BsaXI	ACNNNNNCTCC	4 cut(s)	397, 421, 427, 451
Bsc4I	CCNNNNNNNGG	2 cut(s)	470, 545
Bse118I	RCCGGY	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	199
Bse3DI	GCAATG	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	2 cut(s)	337, 352
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	2 cut(s)	470, 545
BseMI	GCAATG	1 cut(s)	600
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	4 cut(s)	429, 450, 453, 474
BseXI	GCAGC	3 cut(s)	71, 130, 570
BsgI	GTGCAG	1 cut(s)	384
BshFI	GGCC	1 cut(s)	7
BshNI	GGYRCC	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	309, 393
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	2 cut(s)	470, 545
BsmFI	GGGAC	1 cut(s)	436
BsnI	GGCC	1 cut(s)	7
Bsp1286I	GDGCHC	1 cut(s)	551
Bsp143I	GATC	1 cut(s)	313
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	1 cut(s)	7
BspLI	GGNNCC	3 cut(s)	6, 121, 550
BspQI	GCTCTTC	1 cut(s)	568
BspT107I	GGYRCC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	600
BsrFI	RCCGGY	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	199
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	337, 352
BssMI	GATC	1 cut(s)	313
BssT1I	CCWWGG	1 cut(s)	352
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	4 cut(s)	115, 347, 376, 589
Bst6I	CTCTTC	1 cut(s)	568
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	411
BstDEI	CTNAG	2 cut(s)	9, 270
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	1 cut(s)	316
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 218, 227, 393, 519, 555
BstNI	CCWGG	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	337
BstSFI	CTRYAG	1 cut(s)	525
BstV1I	GCAGC	3 cut(s)	71, 130, 570
BstV2I	GAAGAC	1 cut(s)	641
BstXI	CCANNNNNNTGG	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	7
BtgZI	GCGATG	1 cut(s)	483
BtrI	CACGTC	1 cut(s)	516
BtsCI	GGATG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	343
Cac8I	GCNNGC	1 cut(s)	411
CaiI	CAGNNNCTG	1 cut(s)	83
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	2 cut(s)	5, 281
Csp6I	GTAC	3 cut(s)	274, 429, 435
CviAII	CATG	3 cut(s)	569, 595, 657
CviQI	GTAC	3 cut(s)	274, 429, 435
DdeI	CTNAG	2 cut(s)	9, 270
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
DraIII	CACNNNGTG	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	568
EarI	CTCTTC	1 cut(s)	568
Eco130I	CCWWGG	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	551
Eco47I	GGWCC	1 cut(s)	281
Eco57I	CTGAAG	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	352
EcoT38I	GRGCYC	1 cut(s)	551
ErhI	CCWWGG	1 cut(s)	352
FaeI	CATG	3 cut(s)	572, 598, 660
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	3 cut(s)	568, 594, 656
Fnu4HI	GCNGC	3 cut(s)	60, 144, 559
FokI	GGATG	1 cut(s)	239
FriOI	GRGCYC	1 cut(s)	551
Fsp4HI	GCNGC	3 cut(s)	60, 144, 559
FspBI	CTAG	5 cut(s)	176, 384, 432, 489, 645
GluI	GCNGC	3 cut(s)	60, 144, 559
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	1 cut(s)	7
HapII	CCGG	2 cut(s)	309, 393
Hin1II	CATG	3 cut(s)	572, 598, 660
HpaII	CCGG	2 cut(s)	309, 393
HphI	GGTGA	1 cut(s)	364
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	1 cut(s)	471
Hpy99I	CGWCG	2 cut(s)	209, 281
HpyAV	CCTTC	4 cut(s)	166, 182, 453, 477
HpyCH4III	ACNGT	4 cut(s)	115, 347, 376, 589
HpyCH4IV	ACGT	3 cut(s)	207, 246, 515
HpyCH4V	TGCA	5 cut(s)	41, 221, 243, 401, 656
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 218, 227, 393, 519, 555
HpyF3I	CTNAG	2 cut(s)	9, 270
HpySE526I	ACGT	3 cut(s)	207, 246, 515
Hsp92II	CATG	3 cut(s)	572, 598, 660
Kzo9I	GATC	1 cut(s)	313
LguI	GCTCTTC	1 cut(s)	568
LmnI	GCTCC	3 cut(s)	418, 473, 554
Lsp1109I	GCAGC	3 cut(s)	71, 130, 570
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	5 cut(s)	176, 384, 432, 489, 645
MaeII	ACGT	3 cut(s)	207, 246, 515
MaeIII	GTNAC	4 cut(s)	247, 347, 376, 574
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MboII	GAAGA	2 cut(s)	555, 641
MfeI	CAATTG	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	551
MluCI	AATT	2 cut(s)	42, 184
MmeI	TCCRAC	1 cut(s)	83
MnlI	CCTC	6 cut(s)	266, 308, 450, 471, 474, 495
MslI	CAYNNNNRTG	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	2 cut(s)	309, 393
MspR9I	CCNGG	1 cut(s)	339
MunI	CAATTG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	6 cut(s)	59, 218, 227, 393, 519, 555
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	3 cut(s)	572, 598, 660
NlaIV	GGNNCC	3 cut(s)	6, 121, 550
NmuCI	GTSAC	1 cut(s)	347
OliI	CACNNNNGTG	1 cut(s)	32
PciSI	GCTCTTC	1 cut(s)	568
PkrI	GCNGC	3 cut(s)	61, 145, 560
Psp1406I	AACGTT	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	3 cut(s)	6, 121, 550
PspPI	GGNCC	2 cut(s)	5, 281
PstNI	CAGNNNCTG	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	3 cut(s)	275, 430, 436
RsaNI	GTAC	3 cut(s)	274, 429, 435
RseI	CAYNNNNRTG	1 cut(s)	32
SapI	GCTCTTC	1 cut(s)	568
SatI	GCNGC	3 cut(s)	60, 144, 559
Sau3AI	GATC	1 cut(s)	313
Sau96I	GGNCC	2 cut(s)	5, 281
ScaI	AGTACT	2 cut(s)	430, 436
ScrFI	CCNGG	1 cut(s)	339
SduI	GDGCHC	1 cut(s)	551
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	1 cut(s)	525
SgrAI	CRCCGGYG	1 cut(s)	308
SinI	GGWCC	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	32
SpeI	ACTAGT	2 cut(s)	431, 644
Sse9I	AATT	2 cut(s)	42, 184
SsiI	CCGC	1 cut(s)	75
SspMI	CTAG	5 cut(s)	176, 384, 432, 489, 645
StyD4I	CCNGG	1 cut(s)	337
StyI	CCWWGG	1 cut(s)	352
TaaI	ACNGT	4 cut(s)	115, 347, 376, 589
TaiI	ACGT	3 cut(s)	210, 249, 518
TaqI	TCGA	1 cut(s)	584
TasI	AATT	2 cut(s)	42, 184
TatI	WGTACW	2 cut(s)	428, 434
TscAI	CASTG	1 cut(s)	350
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	3 cut(s)	59, 143, 558
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	1 cut(s)	583
TspGWI	ACGGA	1 cut(s)	294
TspRI	CASTG	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	281
XspI	CTAG	5 cut(s)	176, 384, 432, 489, 645
ZrmI	AGTACT	2 cut(s)	430, 436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.