FvH4_1g03780

serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
2021708 .. 2024283
2576 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03780.t1

Sequence Viewer

Length: 1932 bp
ATGCATGGTCAGCGTATGCAGAAGGATGAAACCTTGATTTCTGATGGTGGAGTGTTTGAGCTAGGCTTTTTCTACCCCTCGGATTCTGAAGGATACTTGGGAATCTGGTTGAAGAATGACATAAAGAAAAGGCCAGTTTGGGTGGCAAACAGAGATGACCGTCTTATGGATCCCAATGCAAGTCTCTACTTCAATCCTTATGGATTGGTGATCAGTGATAATAGAAATTCACCGTATGTTTTCGCTTATGGAGCAACTGCAACAGATAACAGCACAAGCGCAAGGATTCTTGACTCGGGAAACTTAATCCTGATGCAAGGAGGAAAGACTTTGTGGCAGAGCTTTGATAACCTGGTAGATACATTTCTTCCTGGAATGAAATTGGGGGTGGTTAACATAACCAATGCTCAGTTGAAGTTTATGTTTCTTATATCATGGAGAAGCGTACATGACCCTACAAGTGGTTATCTTGGTGTAAGTTTGGACAGCCCAACTCAAGTCACTGTCTGGCGCGCAAATGGTAAAGAGAAACAGATTGGCTACTGGGATGGCCATAATTTCAGATTTGTTTTCAAAACCAAGTTAGATAATTACAATGTCAGCTATGTATTGAACAGCGAGGAGCGTTATCTTACTTACAGCAACAAAGATAGTAATGTATATTCATGGTTTGCATTGGCTTCGGATGGTAAGATCCAGGAGTTCATAATGGTAGGACAGAAGATTTCGGTTGTGAGTCATTCGGTATGTGGTGACTGCTGGTTGGTGTCATCAAGAGAAAAGAAGCTGTTGCTGGTTGTCAAAGTTGTGGCTCCCTTGACTACCTTCATTTTGATCTTGATCTTGTTCCTGTATGTTCTATGGAGAAAGCGCTACTCTTTAGATGATAGTGGTAGCAGTTCACCTGTTTTAGAAAGTGGAAAGACGAAGGATCATGTTTTGCCAATGCTTAGCTTTTCCTGCATTGTGGCGTCCACAAATAATTTCTCAGCTGCTAACAAGCTTGGAGAAGGAGGTTATGGGCCTGTTTATAAGGGTAACTTACTGCAATATGACATTGCGGTAAAAAGGCTTTCCAAAAGATCTGGACAAGGAGTGGTGGAGTTCAAGAATGAGGTGCAGTTAATCTCTCAGCTGCAGCACAGAAATCTTGTTAAGATTTTGGGCTGTTGCACTCAACGTGAAGAAAAAATATTAATATACGAGTATATGTCCAACAGAAGTTTGGATTCCTTCATTTTTGATCCAATTAAGCGAAGACAACTGAAGTGGAGACACCGCATACACATAATTGAAGGGATTGCTCAAGGGCTGCTTTATCTTCACAAGTACTCTCGACTAAGAATTATTCATCGAGACCTCAAAACAAGCAACATCTTATTGGATGCTTATATGAACCCCAAGATATCAGACTTTGGCTTGGCTAGAATTTTATCTGGGAATGAATGTGGAGCTGAAACAAAGCGGATTGTTGGAACATTTGGTTATATGTCTCCCGAGTATGTACTACAAGGCCTTTTGTCAACAAAATCGGATGTATTCAGCTTTGGAGTCATTGTGTTGGAGATTATGAGTGGCATGAAGAATGCAACCTTTTATGAGTCAGATTGTTCTTTGAACTTGCTAGGACATGCCTGGAATTTGTGGATATCTGGACGATGTGAGGAGTTGTTAGATCCAACATTAGCTGATACAAGTTCAAGGGATGGCTGTGTACTCTGCATTCAGGTAGGTCTTTTATGCGTTCAAGATTGTGCAGAAGATAGACCAAACATGTCAGAAGTTGTTACAATGTTGAGCAATGAAGGAGCTAGTTTACCAATGCCAAAGCAGCCTATGTATTCTAACTTGATGTCTGAGGTAGATAAAGCATTAAGAAGCGGAGTCCCTTCCGAGAATCTCTTGACATATTCATCAGTAGTAGCAAGATAG

Protein Analysis

644

Amino Acids

72.44

Weight (kDa)

8.41

Isoelectric Point (pI)

46.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 46 - 147 2.6e-20 D-mannose binding lectin
Pkinase PF00069 331 - 527 2.9e-42 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 332 - 528 7.8e-45 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015514)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1032
AccII CGCG 1 cut(s) 513
AciI CCGC 4 cut(s) 1061, 1279, 1465, 1881
AclWI GGATC 6 cut(s) 164, 177, 688, 939, 1238, 1670
AcoI YGGCCR 1 cut(s) 550
AcsI RAATTY 3 cut(s) 226, 1428, 1639
AcuI CTGAAG 2 cut(s) 108, 1286
AcyI GRCGYC 1 cut(s) 971
AfaI GTAC 4 cut(s) 447, 1331, 1506, 1716
AfeI AGCGCT 1 cut(s) 872
AfiI CCNNNNNNNGG 2 cut(s) 166, 461
AflIII ACRYGT 1 cut(s) 1773
AjnI CCWGG 4 cut(s) 351, 370, 696, 1634
Alw26I GTCTC 4 cut(s) 188, 1267, 1350, 1497
AlwI GGATC 6 cut(s) 164, 177, 688, 939, 1238, 1670
Ama87I CYCGRG 2 cut(s) 295, 1496
Aor51HI AGCGCT 1 cut(s) 872
AoxI GGCC 4 cut(s) 131, 550, 1022, 1513
ApeKI GCWGC 5 cut(s) 992, 1135, 1138, 1312, 1831
ApoI RAATTY 3 cut(s) 226, 1428, 1639
AseI ATTAAT 1 cut(s) 1196
AspLEI GCGC 4 cut(s) 281, 513, 515, 873
AspS9I GGNCC 1 cut(s) 1022
AsuHPI GGTGA 4 cut(s) 220, 222, 764, 894
AvaI CYCGRG 2 cut(s) 295, 1496
BalI TGGCCA 1 cut(s) 552
BamHI GGATCC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 1264
BbvI GCAGC 5 cut(s) 979, 1122, 1150, 1299, 1843
BccI CCATC 4 cut(s) 38, 542, 680, 1700
BcgI CGANNNNNNTGC 2 cut(s) 663, 697
BciT130I CCWGG 4 cut(s) 353, 372, 698, 1636
BciVI GTATCC 1 cut(s) 86
BclI TGATCA 1 cut(s) 210
BcoDI GTCTC 4 cut(s) 188, 1267, 1350, 1497
BfaI CTAG 4 cut(s) 62, 1425, 1625, 1812
BfmI CTRYAG 1 cut(s) 1136
BfoI RGCGCY 1 cut(s) 874
BfuI GTATCC 1 cut(s) 86
BglII AGATCT 1 cut(s) 1082
BisI GCNGC 5 cut(s) 993, 1136, 1139, 1313, 1832
BlpI GCTNAGC 1 cut(s) 950
BlsI GCNGC 5 cut(s) 994, 1137, 1140, 1314, 1833
BmcAI AGTACT 1 cut(s) 1331
Bme1390I CCNGG 4 cut(s) 353, 372, 698, 1636
BmeT110I CYCGRG 2 cut(s) 295, 1496
BmgT120I GGNCC 1 cut(s) 1022
BmiI GGNNCC 2 cut(s) 171, 813
BmrFI CCNGG 4 cut(s) 353, 372, 698, 1636
BmrI ACTGGG 1 cut(s) 553
BmsI GCATC 2 cut(s) 303, 1375
BmuI ACTGGG 1 cut(s) 553
BpiI GAAGAC 1 cut(s) 1264
Bpu1102I GCTNAGC 1 cut(s) 950
BpuEI CTTGAG 2 cut(s) 480, 1290
BsaBI GATNNNNATC 1 cut(s) 839
BsaHI GRCGYC 1 cut(s) 971
BsaI GGTCTC 1 cut(s) 1350
BsaJI CCNNGG 1 cut(s) 78
BsaXI ACNNNNNCTCC 2 cut(s) 1542, 1572
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 461
Bse1I ACTGG 2 cut(s) 134, 548
Bse3DI GCAATG 2 cut(s) 1056, 1807
Bse8I GATNNNNATC 1 cut(s) 839
BseBI CCWGG 4 cut(s) 353, 372, 698, 1636
BseDI CCNNGG 1 cut(s) 78
BseGI GGATG 6 cut(s) 31, 553, 691, 1390, 1540, 1711
BseJI GATNNNNATC 1 cut(s) 839
BseLI CCNNNNNNNGG 2 cut(s) 166, 461
BseMI GCAATG 2 cut(s) 1056, 1807
BseMII CTCAG 4 cut(s) 422, 1002, 1145, 1848
BseNI ACTGG 2 cut(s) 134, 548
BsePI GCGCGC 1 cut(s) 511
BseRI GAGGAG 2 cut(s) 635, 1679
BseXI GCAGC 5 cut(s) 979, 1122, 1150, 1299, 1843
BsgI GTGCAG 2 cut(s) 1139, 1776
Bsh1236I CGCG 1 cut(s) 513
BshFI GGCC 4 cut(s) 133, 552, 1024, 1515
BsiHKCI CYCGRG 2 cut(s) 295, 1496
BslFI GGGAC 1 cut(s) 1871
BslI CCNNNNNNNGG 2 cut(s) 166, 461
BsmAI GTCTC 4 cut(s) 188, 1267, 1350, 1497
BsmFI GGGAC 1 cut(s) 1871
BsmI GAATGC 2 cut(s) 1591, 1722
BsnI GGCC 4 cut(s) 133, 552, 1024, 1515
Bso31I GGTCTC 1 cut(s) 1350
BsoBI CYCGRG 2 cut(s) 295, 1496
Bsp143I GATC 9 cut(s) 169, 210, 693, 834, 840, 931, 1082, 1243, 1675
Bsp1720I GCTNAGC 1 cut(s) 950
BspACI CCGC 4 cut(s) 1061, 1279, 1465, 1881
BspANI GGCC 4 cut(s) 133, 552, 1024, 1515
BspCNI CTCAG 4 cut(s) 421, 1001, 1144, 1849
BspFNI CGCG 1 cut(s) 513
BspLI GGNNCC 2 cut(s) 171, 813
BspMAI CTGCAG 1 cut(s) 1140
BspPI GGATC 6 cut(s) 164, 177, 688, 939, 1238, 1670
BspTNI GGTCTC 1 cut(s) 1350
BsrDI GCAATG 2 cut(s) 1056, 1807
BsrI ACTGG 2 cut(s) 134, 548
BssECI CCNNGG 1 cut(s) 78
BssHII GCGCGC 1 cut(s) 511
BssMI GATC 9 cut(s) 169, 210, 693, 834, 840, 931, 1082, 1243, 1675
BssNI GRCGYC 1 cut(s) 971
Bst2UI CCWGG 4 cut(s) 353, 372, 698, 1636
Bst4CI ACNGT 3 cut(s) 161, 234, 505
BstACI GRCGYC 1 cut(s) 971
BstC8I GCNNGC 1 cut(s) 513
BstDEI CTNAG 6 cut(s) 408, 950, 988, 1131, 1340, 1857
BstF5I GGATG 6 cut(s) 31, 553, 691, 1390, 1540, 1711
BstFNI CGCG 1 cut(s) 513
BstH2I RGCGCY 1 cut(s) 874
BstHHI GCGC 4 cut(s) 281, 513, 515, 873
BstKTI GATC 9 cut(s) 172, 213, 696, 837, 843, 934, 1085, 1246, 1678
BstMAI GTCTC 4 cut(s) 188, 1267, 1350, 1497
BstMBI GATC 9 cut(s) 169, 210, 693, 834, 840, 931, 1082, 1243, 1675
BstMWI GCNNNNNNNGC 4 cut(s) 10, 251, 960, 1831
BstNI CCWGG 4 cut(s) 353, 372, 698, 1636
BstNSI RCATGY 2 cut(s) 1634, 1777
BstSCI CCNGG 4 cut(s) 351, 370, 696, 1634
BstSFI CTRYAG 1 cut(s) 1136
BstUI CGCG 1 cut(s) 513
BstV1I GCAGC 5 cut(s) 979, 1122, 1150, 1299, 1843
BstV2I GAAGAC 1 cut(s) 1264
BstX2I RGATCY 4 cut(s) 169, 693, 1082, 1675
BstYI RGATCY 4 cut(s) 169, 693, 1082, 1675
BsuI GTATCC 1 cut(s) 86
BsuRI GGCC 4 cut(s) 133, 552, 1024, 1515
BtsCI GGATG 6 cut(s) 31, 553, 691, 1390, 1540, 1711
BtsIMutI CAGTG 2 cut(s) 220, 501
Cac8I GCNNGC 1 cut(s) 513
CfoI GCGC 4 cut(s) 281, 513, 515, 873
Cfr13I GGNCC 1 cut(s) 1022
CseI GACGC 1 cut(s) 960
CsiI ACCWGGT 1 cut(s) 351
Csp6I GTAC 4 cut(s) 446, 1330, 1505, 1715
CspCI CAANNNNNGTGG 2 cut(s) 1250, 1285
CviAII CATG 8 cut(s) 5, 435, 449, 666, 935, 1579, 1631, 1774
CviQI GTAC 4 cut(s) 446, 1330, 1505, 1715
DdeI CTNAG 6 cut(s) 408, 950, 988, 1131, 1340, 1857
DpnI GATC 9 cut(s) 171, 212, 695, 836, 842, 933, 1084, 1245, 1677
DpnII GATC 9 cut(s) 169, 210, 693, 834, 840, 931, 1082, 1243, 1675
EaeI YGGCCR 1 cut(s) 550
Eco147I AGGCCT 1 cut(s) 1515
Eco31I GGTCTC 1 cut(s) 1350
Eco32I GATATC 2 cut(s) 1407, 1650
Eco47III AGCGCT 1 cut(s) 872
Eco57I CTGAAG 2 cut(s) 108, 1286
Eco88I CYCGRG 2 cut(s) 295, 1496
EcoRII CCWGG 4 cut(s) 351, 370, 696, 1634
EcoRV GATATC 2 cut(s) 1407, 1650
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 8 cut(s) 8, 438, 452, 669, 938, 1582, 1634, 1777
FalI AAGNNNNNCTT 4 cut(s) 1025, 1057, 1299, 1331
FaqI GGGAC 1 cut(s) 1871
FatI CATG 8 cut(s) 4, 434, 448, 665, 934, 1578, 1630, 1773
FbaI TGATCA 1 cut(s) 210
Fnu4HI GCNGC 5 cut(s) 993, 1136, 1139, 1313, 1832
FokI GGATG 6 cut(s) 38, 560, 698, 1397, 1547, 1718
Fsp4HI GCNGC 5 cut(s) 993, 1136, 1139, 1313, 1832
FspBI CTAG 4 cut(s) 62, 1425, 1625, 1812
GlaI GCGC 4 cut(s) 280, 512, 514, 872
GluI GCNGC 5 cut(s) 993, 1136, 1139, 1313, 1832
HaeII RGCGCY 1 cut(s) 874
HaeIII GGCC 4 cut(s) 133, 552, 1024, 1515
HgaI GACGC 1 cut(s) 960
HhaI GCGC 4 cut(s) 281, 513, 515, 873
Hin1I GRCGYC 1 cut(s) 971
Hin1II CATG 8 cut(s) 8, 438, 452, 669, 938, 1582, 1634, 1777
Hin6I GCGC 4 cut(s) 279, 511, 513, 871
HinP1I GCGC 4 cut(s) 279, 511, 513, 871
HincII GTYRAC 2 cut(s) 394, 1524
HindII GTYRAC 2 cut(s) 394, 1524
HindIII AAGCTT 1 cut(s) 1001
HpaI GTTAAC 1 cut(s) 394
HphI GGTGA 4 cut(s) 220, 222, 764, 894
Hpy166II GTNNAC 6 cut(s) 394, 902, 975, 1524, 1715, 1817
Hpy8I GTNNAC 6 cut(s) 394, 902, 975, 1524, 1715, 1817
HpyAV CCTTC 9 cut(s) 16, 83, 835, 922, 1004, 1243, 1289, 1799, 1899
HpyCH4III ACNGT 3 cut(s) 161, 234, 505
HpyCH4IV ACGT 1 cut(s) 1180
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 251, 960, 1831
HpyF3I CTNAG 6 cut(s) 408, 950, 988, 1131, 1340, 1857
HpySE526I ACGT 1 cut(s) 1180
Hsp92I GRCGYC 1 cut(s) 971
Hsp92II CATG 8 cut(s) 8, 438, 452, 669, 938, 1582, 1634, 1777
HspAI GCGC 4 cut(s) 279, 511, 513, 871
Ksp22I TGATCA 1 cut(s) 210
KspAI GTTAAC 1 cut(s) 394
Kzo9I GATC 9 cut(s) 169, 210, 693, 834, 840, 931, 1082, 1243, 1675
LmnI GCTCC 5 cut(s) 251, 622, 817, 1451, 1808
Lsp1109I GCAGC 5 cut(s) 979, 1122, 1150, 1299, 1843
LweI GCATC 2 cut(s) 303, 1375
MabI ACCWGGT 1 cut(s) 351
MaeI CTAG 4 cut(s) 62, 1425, 1625, 1812
MaeII ACGT 1 cut(s) 1180
MaeIII GTNAC 4 cut(s) 499, 752, 1037, 1786
MalI GATC 9 cut(s) 171, 212, 695, 836, 842, 933, 1084, 1245, 1677
MboI GATC 9 cut(s) 169, 210, 693, 834, 840, 931, 1082, 1243, 1675
MboII GAAGA 8 cut(s) 124, 359, 733, 1196, 1269, 1313, 1594, 1772
MflI RGATCY 4 cut(s) 169, 693, 1082, 1675
MlsI TGGCCA 1 cut(s) 552
MluNI TGGCCA 1 cut(s) 552
MlyI GAGTC 5 cut(s) 287, 745, 1560, 1610, 1893
MmeI TCCRAC 4 cut(s) 1239, 1453, 1542, 1703
MnlI CCTC 8 cut(s) 88, 314, 613, 1007, 1108, 1370, 1657, 1852
Mox20I TGGCCA 1 cut(s) 552
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 552
MseI TTAA 7 cut(s) 305, 393, 1124, 1155, 1196, 1251, 1874
Msp20I TGGCCA 1 cut(s) 552
MspA1I CMGCKG 2 cut(s) 992, 1135
MspR9I CCNGG 4 cut(s) 353, 372, 698, 1636
Mva1269I GAATGC 2 cut(s) 1591, 1722
MvaI CCWGG 4 cut(s) 353, 372, 698, 1636
MvnI CGCG 1 cut(s) 513
MwoI GCNNNNNNNGC 4 cut(s) 10, 251, 960, 1831
NdeII GATC 9 cut(s) 169, 210, 693, 834, 840, 931, 1082, 1243, 1675
NlaIII CATG 8 cut(s) 8, 438, 452, 669, 938, 1582, 1634, 1777
NlaIV GGNNCC 2 cut(s) 171, 813
NmuCI GTSAC 2 cut(s) 499, 752
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 1634, 1777
PauI GCGCGC 1 cut(s) 511
PceI AGGCCT 1 cut(s) 1515
PciI ACATGT 1 cut(s) 1773
PctI GAATGC 2 cut(s) 1591, 1722
PfeI GAWTC 5 cut(s) 83, 102, 286, 1229, 1897
PfoI TCCNGGA 2 cut(s) 370, 696
PkrI GCNGC 5 cut(s) 994, 1137, 1140, 1314, 1833
PleI GAGTC 5 cut(s) 287, 744, 1559, 1609, 1892
PpsI GAGTC 5 cut(s) 287, 744, 1559, 1609, 1892
PscI ACATGT 1 cut(s) 1773
PshBI ATTAAT 1 cut(s) 1196
PsiI TTATAA 1 cut(s) 1032
Psp6I CCWGG 4 cut(s) 351, 370, 696, 1634
PspGI CCWGG 4 cut(s) 351, 370, 696, 1634
PspN4I GGNNCC 2 cut(s) 171, 813
PspPI GGNCC 1 cut(s) 1022
PstI CTGCAG 1 cut(s) 1140
PsuI RGATCY 4 cut(s) 169, 693, 1082, 1675
PteI GCGCGC 1 cut(s) 511
PvuII CAGCTG 2 cut(s) 992, 1135
RsaI GTAC 4 cut(s) 447, 1331, 1506, 1716
RsaNI GTAC 4 cut(s) 446, 1330, 1505, 1715
SaqAI TTAA 7 cut(s) 305, 393, 1124, 1155, 1196, 1251, 1874
SatI GCNGC 5 cut(s) 993, 1136, 1139, 1313, 1832
Sau3AI GATC 9 cut(s) 169, 210, 693, 834, 840, 931, 1082, 1243, 1675
Sau96I GGNCC 1 cut(s) 1022
ScaI AGTACT 1 cut(s) 1331
SchI GAGTC 5 cut(s) 287, 745, 1560, 1610, 1893
ScrFI CCNGG 4 cut(s) 353, 372, 698, 1636
SexAI ACCWGGT 1 cut(s) 351
SfaNI GCATC 2 cut(s) 303, 1375
SfcI CTRYAG 1 cut(s) 1136
SmlI CTYRAG 2 cut(s) 495, 1305
SmoI CTYRAG 2 cut(s) 495, 1305
SseBI AGGCCT 1 cut(s) 1515
SsiI CCGC 4 cut(s) 1061, 1279, 1465, 1881
SspI AATATT 1 cut(s) 1194
SspMI CTAG 4 cut(s) 62, 1425, 1625, 1812
StuI AGGCCT 1 cut(s) 1515
StyD4I CCNGG 4 cut(s) 351, 370, 696, 1634
TaaI ACNGT 3 cut(s) 161, 234, 505
TaiI ACGT 1 cut(s) 1183
TaqI TCGA 2 cut(s) 1336, 1354
TatI WGTACW 3 cut(s) 1329, 1504, 1714
TfiI GAWTC 5 cut(s) 83, 102, 286, 1229, 1897
Tru1I TTAA 7 cut(s) 305, 393, 1124, 1155, 1196, 1251, 1874
Tru9I TTAA 7 cut(s) 305, 393, 1124, 1155, 1196, 1251, 1874
TscAI CASTG 2 cut(s) 220, 508
TseFI GTSAC 2 cut(s) 499, 752
TseI GCWGC 5 cut(s) 992, 1135, 1138, 1312, 1831
Tsp45I GTSAC 2 cut(s) 499, 752
TspRI CASTG 2 cut(s) 220, 508
VspI ATTAAT 1 cut(s) 1196
XapI RAATTY 3 cut(s) 226, 1428, 1639
XceI RCATGY 2 cut(s) 1634, 1777
XcmI CCANNNNNNNNNTGG 1 cut(s) 1222
XspI CTAG 4 cut(s) 62, 1425, 1625, 1812
ZrmI AGTACT 1 cut(s) 1331
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.