Rorug01G0488300

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015514
Physical Location & Seq
Reverse (-)
57372299 .. 57373232
934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0488300.1

Sequence Viewer

Length: 639 bp
ATGCTAATTTACAGAGAAGGGAAGAATTCCTGCAATTGGAATAGGCCGGTTGTCTTCAAAGAACTGGCAGCGGTGAGCTTTGCCAAAGCTCAGGAAACTGCCGTGACGGATCAGTTCGTGGCTTGGCTGGTTAAAGAGCTTCAAGGGACTGATTTTTGGAAGCTACAACGAGCATACTCGCCTGGGATACAAGAGTACGTTGAAGCTGCAACCTTCTGTAAATTCTGCAGGACCGAGACTCTTTTGAATCTTGATGAGATGAATGCTACTTTGCTACCACTCAGTGATCCGTCTCTTGAGCCTTTGCAGATCAATGTCCTTAACTATCTCCTAGGGCTTGCAGATTTGACTGGAGAGCTGATGCGGTTGGCAATTGGTCGAATTTCAGATGGTGAAGTTGAATTTGCTGAGGACATGTGCAAGTTTGTGCGTGAAATTTACAGGGAACTAACCCTAGTTGTCCCCTTTATGGATGATAGTAATGACATGAAGACGAAAATGGATACAATGCTTCAAAGTGTAATGAAGATAAAGAATGCTTGCTTCAGTGTTCATGTTAGAGGATCAGAGTATATGCCTCTACTTGGCTCCGAGGATCCAACTTCCTTTTTATTGGGAGTGCCCAGTGTTGATATATGA

Protein Analysis

212

Amino Acids

24.0

Weight (kDa)

4.66

Isoelectric Point (pI)

37.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Translin PF01997 26 - 188 4.6e-41 Translin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015514)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03780
malus_domestica MD02G1036400.v1.1 MD15G1176600.v1.1
prunus_persica Prupe.7G239000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0089191
rosa_laevigata RLG00000016003
rosa_multiflora Rmu_sc0008322.1_g000027 Rmu_sc0008909.1_g000009
rosa_roxburghii Rroxscaffold_2G00152160
rosa_rugosa Rorug01G0488300
rosa_samantha Rh2AG043900 Rh2BG042600 Rh2CG044100 Rh2DG042900
rosa_wichuraiana Rw2G003920 Rw2G003930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 71, 364
AclWI GGATC 5 cut(s) 117, 281, 571, 590, 603
AcsI RAATTY 5 cut(s) 25, 221, 381, 401, 435
AcuI CTGAAG 1 cut(s) 529
AdeI CACNNNGTG 1 cut(s) 284
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 3 cut(s) 36, 469, 584
AflIII ACRYGT 1 cut(s) 414
AgsI TTSAA 6 cut(s) 58, 143, 203, 247, 401, 515
AjnI CCWGG 1 cut(s) 181
AluBI AGCT 6 cut(s) 78, 89, 139, 163, 206, 358
AluI AGCT 6 cut(s) 78, 89, 139, 163, 206, 358
Alw26I GTCTC 2 cut(s) 230, 297
AlwI GGATC 5 cut(s) 117, 281, 571, 590, 603
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 2 cut(s) 68, 206
ApoI RAATTY 5 cut(s) 25, 221, 381, 401, 435
AspA2I CCTAGG 1 cut(s) 331
AspS9I GGNCC 1 cut(s) 231
AsuHPI GGTGA 2 cut(s) 85, 404
AvaII GGWCC 1 cut(s) 231
AvrII CCTAGG 1 cut(s) 331
BaeGI GKGCMC 1 cut(s) 624
BaeI ACNNNNGTAYC 2 cut(s) 179, 212
BamHI GGATCC 1 cut(s) 595
BbsI GAAGAC 2 cut(s) 46, 497
BbvCI CCTCAGC 1 cut(s) 408
BbvI GCAGC 2 cut(s) 80, 193
BccI CCATC 1 cut(s) 383
BceAI ACGGC 1 cut(s) 86
BciT130I CCWGG 1 cut(s) 183
BciVI GTATCC 2 cut(s) 180, 496
BcoDI GTCTC 2 cut(s) 230, 297
BfaI CTAG 2 cut(s) 332, 455
BfmI CTRYAG 1 cut(s) 226
BfuI GTATCC 2 cut(s) 180, 496
BisI GCNGC 2 cut(s) 69, 207
BlnI CCTAGG 1 cut(s) 331
BlsI GCNGC 2 cut(s) 70, 208
Bme1390I CCNGG 1 cut(s) 183
Bme18I GGWCC 1 cut(s) 231
BmgT120I GGNCC 1 cut(s) 231
BmiI GGNNCC 2 cut(s) 589, 597
BmrFI CCNGG 1 cut(s) 183
BmrI ACTGGG 1 cut(s) 618
BmsI GCATC 1 cut(s) 351
BmuI ACTGGG 1 cut(s) 618
BpiI GAAGAC 2 cut(s) 46, 497
BpmI CTGGAG 1 cut(s) 372
Bpu10I CCTNAGC 2 cut(s) 90, 408
BpuEI CTTGAG 1 cut(s) 317
BsaJI CCNNGG 3 cut(s) 182, 331, 591
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 469, 584
Bse118I RCCGGY 1 cut(s) 46
Bse1I ACTGG 3 cut(s) 69, 355, 624
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 3 cut(s) 182, 331, 591
BseGI GGATG 1 cut(s) 478
BseLI CCNNNNNNNGG 3 cut(s) 36, 469, 584
BseMII CTCAG 3 cut(s) 104, 295, 399
BseNI ACTGG 3 cut(s) 69, 355, 624
BseSI GKGCMC 1 cut(s) 624
BseXI GCAGC 2 cut(s) 80, 193
BshFI GGCC 1 cut(s) 46
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 2 cut(s) 160, 446
BslI CCNNNNNNNGG 3 cut(s) 36, 469, 584
BsmAI GTCTC 2 cut(s) 230, 297
BsmBI CGTCTC 1 cut(s) 297
BsmFI GGGAC 2 cut(s) 160, 446
BsmI GAATGC 2 cut(s) 268, 541
BsnI GGCC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 624
Bsp143I GATC 5 cut(s) 109, 286, 309, 563, 595
BspACI CCGC 2 cut(s) 71, 364
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 3 cut(s) 103, 294, 400
BspLI GGNNCC 2 cut(s) 589, 597
BspMAI CTGCAG 1 cut(s) 230
BspPI GGATC 5 cut(s) 117, 281, 571, 590, 603
BsrFI RCCGGY 1 cut(s) 46
BsrI ACTGG 3 cut(s) 69, 355, 624
BssAI RCCGGY 1 cut(s) 46
BssECI CCNNGG 3 cut(s) 182, 331, 591
BssMI GATC 5 cut(s) 109, 286, 309, 563, 595
BssT1I CCWWGG 1 cut(s) 331
Bst2UI CCWGG 1 cut(s) 183
BstC8I GCNNGC 2 cut(s) 339, 541
BstDEI CTNAG 3 cut(s) 90, 281, 408
BstF5I GGATG 1 cut(s) 478
BstKTI GATC 5 cut(s) 112, 289, 312, 566, 598
BstMAI GTCTC 2 cut(s) 230, 297
BstMBI GATC 5 cut(s) 109, 286, 309, 563, 595
BstNI CCWGG 1 cut(s) 183
BstNSI RCATGY 1 cut(s) 418
BstSCI CCNGG 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 226
BstSLI GKGCMC 1 cut(s) 624
BstV1I GCAGC 2 cut(s) 80, 193
BstV2I GAAGAC 2 cut(s) 46, 497
BstX2I RGATCY 1 cut(s) 595
BstYI RGATCY 1 cut(s) 595
BsuI GTATCC 2 cut(s) 180, 496
BsuRI GGCC 1 cut(s) 46
BtsCI GGATG 1 cut(s) 478
BtsIMutI CAGTG 3 cut(s) 289, 553, 631
Cac8I GCNNGC 2 cut(s) 339, 541
Cfr10I RCCGGY 1 cut(s) 46
Cfr13I GGNCC 1 cut(s) 231
Csp6I GTAC 1 cut(s) 196
CviAII CATG 3 cut(s) 415, 487, 554
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 3 cut(s) 90, 281, 408
DpnI GATC 5 cut(s) 111, 288, 311, 565, 597
DpnII GATC 5 cut(s) 109, 286, 309, 563, 595
DraIII CACNNNGTG 1 cut(s) 284
Eco130I CCWWGG 1 cut(s) 331
Eco47I GGWCC 1 cut(s) 231
Eco57I CTGAAG 1 cut(s) 529
EcoRI GAATTC 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 331
Esp3I CGTCTC 1 cut(s) 297
FaeI CATG 3 cut(s) 418, 490, 557
FaiI YATR 9 cut(s) 175, 416, 470, 488, 555, 573, 575, 635, 637
FaqI GGGAC 2 cut(s) 160, 446
FatI CATG 3 cut(s) 414, 486, 553
Fnu4HI GCNGC 2 cut(s) 69, 207
FokI GGATG 1 cut(s) 485
Fsp4HI GCNGC 2 cut(s) 69, 207
FspBI CTAG 2 cut(s) 332, 455
GluI GCNGC 2 cut(s) 69, 207
GsuI CTGGAG 1 cut(s) 372
HaeIII GGCC 1 cut(s) 46
HapII CCGG 1 cut(s) 47
Hin1II CATG 3 cut(s) 418, 490, 557
HinfI GANTC 2 cut(s) 238, 247
HpaII CCGG 1 cut(s) 47
HphI GGTGA 2 cut(s) 85, 404
Hpy188I TCNGA 3 cut(s) 388, 568, 592
Hpy188III TCNNGA 3 cut(s) 92, 251, 296
HpyAV CCTTC 2 cut(s) 11, 223
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 6 cut(s) 33, 209, 228, 307, 341, 420
HpyF3I CTNAG 3 cut(s) 90, 281, 408
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 3 cut(s) 418, 490, 557
Kzo9I GATC 5 cut(s) 109, 286, 309, 563, 595
LmnI GCTCC 1 cut(s) 593
Lsp1109I GCAGC 2 cut(s) 80, 193
LweI GCATC 1 cut(s) 351
MaeI CTAG 2 cut(s) 332, 455
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 103
MalI GATC 5 cut(s) 111, 288, 311, 565, 597
MboI GATC 5 cut(s) 109, 286, 309, 563, 595
MboII GAAGA 4 cut(s) 34, 46, 502, 538
MfeI CAATTG 2 cut(s) 34, 372
MflI RGATCY 1 cut(s) 595
MhlI GDGCHC 1 cut(s) 624
MluCI AATT 8 cut(s) 6, 25, 34, 221, 372, 381, 401, 435
MlyI GAGTC 1 cut(s) 232
MmeI TCCRAC 1 cut(s) 623
MnlI CCTC 4 cut(s) 403, 554, 586, 588
MseI TTAA 2 cut(s) 132, 321
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 1 cut(s) 183
MunI CAATTG 2 cut(s) 34, 372
Mva1269I GAATGC 2 cut(s) 268, 541
MvaI CCWGG 1 cut(s) 183
NdeII GATC 5 cut(s) 109, 286, 309, 563, 595
NlaIII CATG 3 cut(s) 418, 490, 557
NlaIV GGNNCC 2 cut(s) 589, 597
NmuCI GTSAC 1 cut(s) 103
NspI RCATGY 1 cut(s) 418
PciI ACATGT 1 cut(s) 414
PctI GAATGC 2 cut(s) 268, 541
PfeI GAWTC 1 cut(s) 247
PkrI GCNGC 2 cut(s) 70, 208
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
PscI ACATGT 1 cut(s) 414
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
PspN4I GGNNCC 2 cut(s) 589, 597
PspPI GGNCC 1 cut(s) 231
PstI CTGCAG 1 cut(s) 230
PsuI RGATCY 1 cut(s) 595
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SaqAI TTAA 2 cut(s) 132, 321
SatI GCNGC 2 cut(s) 69, 207
Sau3AI GATC 5 cut(s) 109, 286, 309, 563, 595
Sau96I GGNCC 1 cut(s) 231
SchI GAGTC 1 cut(s) 232
ScrFI CCNGG 1 cut(s) 183
SduI GDGCHC 1 cut(s) 624
SetI ASST 8 cut(s) 80, 91, 141, 165, 201, 208, 215, 360
SfaNI GCATC 1 cut(s) 351
SfcI CTRYAG 1 cut(s) 226
SinI GGWCC 1 cut(s) 231
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 8 cut(s) 6, 25, 34, 221, 372, 381, 401, 435
SsiI CCGC 2 cut(s) 71, 364
SspMI CTAG 2 cut(s) 332, 455
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 1 cut(s) 331
TaiI ACGT 1 cut(s) 201
TaqI TCGA 1 cut(s) 379
TaqII GACCGA 1 cut(s) 248
TasI AATT 8 cut(s) 6, 25, 34, 221, 372, 381, 401, 435
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 2 cut(s) 132, 321
Tru9I TTAA 2 cut(s) 132, 321
TscAI CASTG 3 cut(s) 289, 553, 631
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 2 cut(s) 68, 206
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 4 cut(s) 275, 503, 539, 542
TspGWI ACGGA 2 cut(s) 122, 279
TspRI CASTG 3 cut(s) 289, 553, 631
VpaK11BI GGWCC 1 cut(s) 231
XapI RAATTY 5 cut(s) 25, 221, 381, 401, 435
XceI RCATGY 1 cut(s) 418
XmaJI CCTAGG 1 cut(s) 331
XspI CTAG 2 cut(s) 332, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.