Rh2BG042600

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0015514
Physical Location & Seq
Reverse (-)
2955268 .. 2956266
999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG042600.1

Sequence Viewer

Length: 999 bp
ATGAAAATATTGAGAGCTGCTTCTGTTTTCCTTTGTATATTCTTCTGCTTCTTTGTTTGCTCATCTCATGCAACAGATACCCTTAGGCCTGGTCAGCATTTGAAGAGATATGAAACCTTGGTTTCTGATGGTGGAGTATTTGAGCTAGGCTTTTTCTACAGCCCCACTAAGTCAGTTGAAGGATACTTGGGAATCTGGTTGAAGAATGACCAAAAGAAAAGGCCAGTTTGGGTGGCAAATAGAGATGACCATCTTATGGATCCCTATGCAGTTCTCTACATCAACCCTCAGGGAATGGTGATCAGTGATAATAGAAATTCACCCTTTTTTTTCACTTACGGAGCACCTGCAACGACTAATAGAACAAGCGCAAGAATTCTTGACTCGGGAAACCTAATCCTGATGGAAGGAGGAAAGATTGTGTGGCAGAGCTTCGATAACCTGGTAGATACATTTCTTCCTGGAATGAAAATGGGGATGGTTAGCATAACCAATTCTCAGTTGAAGCCTATGTTTCTTTTATCATGGAAAAGCGCACATGACCCTACTAGTGGTTTTCTTGGTTTAAGCTTGGATGACAGCTCAACTCAAGTCAATGTCTGGCACGCTGATGGTAAAGATAAACAGATTGGCCATTGGGACGGCCATGAGTTCAAGTTTGTTTTCAAAACCAGATCAGATAATTACAATTTCAGCTATGTATTGAACAGCAAGGAGCGTTATCTTACTTTCAACAACAAAGAAAGTAATGTATATTCATGGTTTGCATTGGCTTCGGATGGTAAGATCCTGGAGTTCATTAAGGTAGGACAGAAGATTTCGGTTGTGAGTCATTCGGTATGTGGTGACTGCTGGTTGGTGTCATCAAGAGAAAGGAAGCTGTTGCTGGCTGTCAAAGTTGTGGTTCCCTTGACTTTCTTCATTTTGGTCCTGATCTTGTTCCTGTATTGTTTGTGGAGAAAGCGCAACTCTTTAGGTACGTCAACCAAACTGTATTGA

Protein Analysis

332

Amino Acids

37.86

Weight (kDa)

9.16

Isoelectric Point (pI)

30.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 76 - 177 1.2e-21 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015514)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03780
malus_domestica MD02G1036400.v1.1 MD15G1176600.v1.1
prunus_persica Prupe.7G239000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0089191
rosa_laevigata RLG00000016003
rosa_multiflora Rmu_sc0008322.1_g000027 Rmu_sc0008909.1_g000009
rosa_roxburghii Rroxscaffold_2G00152160
rosa_rugosa Rorug01G0488300
rosa_samantha Rh2AG043900 Rh2BG042600 Rh2CG044100 Rh2DG042900
rosa_wichuraiana Rw2G003920 Rw2G003930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 355
Acc36I ACCTGC 1 cut(s) 355
AccB7I CCANNNNNTGG 1 cut(s) 256
AclWI GGATC 3 cut(s) 254, 267, 781
AcoI YGGCCR 2 cut(s) 631, 643
AcsI RAATTY 2 cut(s) 316, 375
AfaI GTAC 1 cut(s) 979
AfiI CCNNNNNNNGG 2 cut(s) 256, 551
AgsI TTSAA 8 cut(s) 103, 179, 202, 505, 655, 667, 706, 733
AhlI ACTAGT 1 cut(s) 548
AjnI CCWGG 4 cut(s) 88, 441, 460, 789
AluBI AGCT 7 cut(s) 17, 145, 432, 570, 582, 696, 880
AluI AGCT 7 cut(s) 17, 145, 432, 570, 582, 696, 880
Alw21I GWGCWC 1 cut(s) 346
AlwI GGATC 3 cut(s) 254, 267, 781
Ama87I CYCGRG 1 cut(s) 385
AoxI GGCC 4 cut(s) 86, 221, 631, 643
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 2 cut(s) 316, 375
AspLEI GCGC 3 cut(s) 371, 536, 966
AspS9I GGNCC 1 cut(s) 928
AsuHPI GGTGA 3 cut(s) 310, 312, 857
AvaI CYCGRG 1 cut(s) 385
AvaII GGWCC 1 cut(s) 928
AxyI CCTNAGG 2 cut(s) 83, 288
BalI TGGCCA 1 cut(s) 633
BamHI GGATCC 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 346
BbvI GCAGC 1 cut(s) 4
BccI CCATC 6 cut(s) 122, 258, 397, 472, 605, 773
BceAI ACGGC 1 cut(s) 658
BcgI CGANNNNNNTGC 2 cut(s) 756, 790
BciT130I CCWGG 4 cut(s) 90, 443, 462, 791
BciVI GTATCC 1 cut(s) 176
BclI TGATCA 1 cut(s) 300
BcuI ACTAGT 1 cut(s) 548
BfaI CTAG 2 cut(s) 146, 549
BfmI CTRYAG 1 cut(s) 157
BfuAI ACCTGC 1 cut(s) 355
BfuI GTATCC 1 cut(s) 176
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
Bme1390I CCNGG 4 cut(s) 90, 443, 462, 791
Bme18I GGWCC 1 cut(s) 928
BmeT110I CYCGRG 1 cut(s) 385
BmgT120I GGNCC 1 cut(s) 928
BmiI GGNNCC 2 cut(s) 261, 906
BmrFI CCNGG 4 cut(s) 90, 443, 462, 791
BpmI CTGGAG 1 cut(s) 812
BpuEI CTTGAG 1 cut(s) 573
BsaBI GATNNNNATC 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 117
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 551
Bse1I ACTGG 1 cut(s) 224
Bse21I CCTNAGG 2 cut(s) 83, 288
Bse8I GATNNNNATC 1 cut(s) 249
BseBI CCWGG 4 cut(s) 90, 443, 462, 791
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 3 cut(s) 483, 580, 784
BseJI GATNNNNATC 1 cut(s) 249
BseLI CCNNNNNNNGG 2 cut(s) 256, 551
BseMII CTCAG 2 cut(s) 302, 512
BseNI ACTGG 1 cut(s) 224
BseXI GCAGC 1 cut(s) 4
BshFI GGCC 4 cut(s) 88, 223, 633, 645
BsiHKAI GWGCWC 1 cut(s) 346
BsiHKCI CYCGRG 1 cut(s) 385
BslFI GGGAC 1 cut(s) 653
BslI CCNNNNNNNGG 2 cut(s) 256, 551
BsmFI GGGAC 1 cut(s) 653
BsnI GGCC 4 cut(s) 88, 223, 633, 645
BsoBI CYCGRG 1 cut(s) 385
Bsp1286I GDGCHC 1 cut(s) 346
Bsp143I GATC 5 cut(s) 259, 300, 674, 786, 933
BspANI GGCC 4 cut(s) 88, 223, 633, 645
BspCNI CTCAG 2 cut(s) 301, 511
BspLI GGNNCC 2 cut(s) 261, 906
BspMI ACCTGC 1 cut(s) 355
BspPI GGATC 3 cut(s) 254, 267, 781
BsrI ACTGG 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 5 cut(s) 259, 300, 674, 786, 933
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 4 cut(s) 90, 443, 462, 791
Bst4CI ACNGT 1 cut(s) 993
Bst6I CTCTTC 1 cut(s) 98
BstC8I GCNNGC 2 cut(s) 606, 888
BstDEI CTNAG 4 cut(s) 83, 168, 288, 498
BstF5I GGATG 3 cut(s) 483, 580, 784
BstHHI GCGC 3 cut(s) 371, 536, 966
BstKTI GATC 5 cut(s) 262, 303, 677, 789, 936
BstMBI GATC 5 cut(s) 259, 300, 674, 786, 933
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstNI CCWGG 4 cut(s) 90, 443, 462, 791
BstSCI CCNGG 4 cut(s) 88, 441, 460, 789
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 4
BstX2I RGATCY 2 cut(s) 259, 786
BstYI RGATCY 2 cut(s) 259, 786
Bsu36I CCTNAGG 2 cut(s) 83, 288
BsuI GTATCC 1 cut(s) 176
BsuRI GGCC 4 cut(s) 88, 223, 633, 645
BtsCI GGATG 3 cut(s) 483, 580, 784
BtsIMutI CAGTG 1 cut(s) 310
BveI ACCTGC 1 cut(s) 355
Cac8I GCNNGC 2 cut(s) 606, 888
CfoI GCGC 3 cut(s) 371, 536, 966
Cfr13I GGNCC 1 cut(s) 928
CsiI ACCWGGT 1 cut(s) 441
Csp6I GTAC 1 cut(s) 978
CviAII CATG 5 cut(s) 68, 525, 539, 647, 759
CviQI GTAC 1 cut(s) 978
DdeI CTNAG 4 cut(s) 83, 168, 288, 498
DpnI GATC 5 cut(s) 261, 302, 676, 788, 935
DpnII GATC 5 cut(s) 259, 300, 674, 786, 933
EaeI YGGCCR 2 cut(s) 631, 643
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 117
Eco147I AGGCCT 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 928
Eco81I CCTNAGG 2 cut(s) 83, 288
Eco88I CYCGRG 1 cut(s) 385
EcoRI GAATTC 1 cut(s) 375
EcoRII CCWGG 4 cut(s) 88, 441, 460, 789
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 5 cut(s) 71, 528, 542, 650, 762
FaqI GGGAC 1 cut(s) 653
FatI CATG 5 cut(s) 67, 524, 538, 646, 758
FbaI TGATCA 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 18
FokI GGATG 3 cut(s) 490, 587, 791
Fsp4HI GCNGC 1 cut(s) 18
FspBI CTAG 2 cut(s) 146, 549
GlaI GCGC 3 cut(s) 370, 535, 965
GluI GCNGC 1 cut(s) 18
GsuI CTGGAG 1 cut(s) 812
HaeIII GGCC 4 cut(s) 88, 223, 633, 645
HhaI GCGC 3 cut(s) 371, 536, 966
Hin1II CATG 5 cut(s) 71, 528, 542, 650, 762
Hin6I GCGC 3 cut(s) 369, 534, 964
HinP1I GCGC 3 cut(s) 369, 534, 964
HincII GTYRAC 1 cut(s) 984
HindII GTYRAC 1 cut(s) 984
HindIII AAGCTT 1 cut(s) 568
HinfI GANTC 3 cut(s) 192, 383, 829
HphI GGTGA 3 cut(s) 310, 312, 857
Hpy166II GTNNAC 1 cut(s) 984
Hpy188I TCNGA 3 cut(s) 127, 679, 778
Hpy188III TCNNGA 5 cut(s) 380, 387, 400, 867, 931
Hpy8I GTNNAC 1 cut(s) 984
HpyAV CCTTC 2 cut(s) 173, 401
HpyCH4III ACNGT 1 cut(s) 993
HpyCH4IV ACGT 1 cut(s) 980
HpyCH4V TGCA 4 cut(s) 71, 269, 350, 767
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
HpyF3I CTNAG 4 cut(s) 83, 168, 288, 498
HpySE526I ACGT 1 cut(s) 980
Hsp92II CATG 5 cut(s) 71, 528, 542, 650, 762
HspAI GCGC 3 cut(s) 369, 534, 964
Ksp22I TGATCA 1 cut(s) 300
Kzo9I GATC 5 cut(s) 259, 300, 674, 786, 933
LmnI GCTCC 2 cut(s) 341, 715
Lsp1109I GCAGC 1 cut(s) 4
MabI ACCWGGT 1 cut(s) 441
MaeI CTAG 2 cut(s) 146, 549
MaeII ACGT 1 cut(s) 980
MaeIII GTNAC 1 cut(s) 845
MalI GATC 5 cut(s) 261, 302, 676, 788, 935
MboI GATC 5 cut(s) 259, 300, 674, 786, 933
MboII GAAGA 6 cut(s) 34, 115, 214, 449, 826, 910
MflI RGATCY 2 cut(s) 259, 786
MhlI GDGCHC 1 cut(s) 346
MlsI TGGCCA 1 cut(s) 633
MluCI AATT 5 cut(s) 316, 375, 493, 682, 688
MluNI TGGCCA 1 cut(s) 633
MlyI GAGTC 2 cut(s) 377, 838
MnlI CCTC 2 cut(s) 297, 404
Mox20I TGGCCA 1 cut(s) 633
MscI TGGCCA 1 cut(s) 633
MseI TTAA 2 cut(s) 566, 801
MslI CAYNNNNRTG 1 cut(s) 609
Msp20I TGGCCA 1 cut(s) 633
MspR9I CCNGG 4 cut(s) 90, 443, 462, 791
MvaI CCWGG 4 cut(s) 90, 443, 462, 791
MwoI GCNNNNNNNGC 1 cut(s) 94
NdeII GATC 5 cut(s) 259, 300, 674, 786, 933
NlaIII CATG 5 cut(s) 71, 528, 542, 650, 762
NlaIV GGNNCC 2 cut(s) 261, 906
NmuCI GTSAC 1 cut(s) 845
PaqCI CACCTGC 1 cut(s) 355
PceI AGGCCT 1 cut(s) 88
PfeI GAWTC 1 cut(s) 192
PflMI CCANNNNNTGG 1 cut(s) 256
PfoI TCCNGGA 2 cut(s) 460, 789
PkrI GCNGC 1 cut(s) 19
PleI GAGTC 2 cut(s) 377, 837
PpsI GAGTC 2 cut(s) 377, 837
Psp6I CCWGG 4 cut(s) 88, 441, 460, 789
PspGI CCWGG 4 cut(s) 88, 441, 460, 789
PspN4I GGNNCC 2 cut(s) 261, 906
PspPI GGNCC 1 cut(s) 928
PsuI RGATCY 2 cut(s) 259, 786
RsaI GTAC 1 cut(s) 979
RsaNI GTAC 1 cut(s) 978
RseI CAYNNNNRTG 1 cut(s) 609
SaqAI TTAA 2 cut(s) 566, 801
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 5 cut(s) 259, 300, 674, 786, 933
Sau96I GGNCC 1 cut(s) 928
SchI GAGTC 2 cut(s) 377, 838
ScrFI CCNGG 4 cut(s) 90, 443, 462, 791
SduI GDGCHC 1 cut(s) 346
SexAI ACCWGGT 1 cut(s) 441
SfcI CTRYAG 1 cut(s) 157
SinI GGWCC 1 cut(s) 928
SmiMI CAYNNNNRTG 1 cut(s) 609
SmlI CTYRAG 1 cut(s) 588
SmoI CTYRAG 1 cut(s) 588
SpeI ACTAGT 1 cut(s) 548
Sse9I AATT 5 cut(s) 316, 375, 493, 682, 688
SseBI AGGCCT 1 cut(s) 88
SspI AATATT 1 cut(s) 9
SspMI CTAG 2 cut(s) 146, 549
StuI AGGCCT 1 cut(s) 88
StyD4I CCNGG 4 cut(s) 88, 441, 460, 789
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 993
TaiI ACGT 1 cut(s) 983
TaqI TCGA 1 cut(s) 435
TasI AATT 5 cut(s) 316, 375, 493, 682, 688
TfiI GAWTC 1 cut(s) 192
Tru1I TTAA 2 cut(s) 566, 801
Tru9I TTAA 2 cut(s) 566, 801
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 1 cut(s) 845
TseI GCWGC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 845
TspDTI ATGAA 6 cut(s) 17, 126, 482, 747, 787, 910
TspGWI ACGGA 1 cut(s) 354
TspRI CASTG 1 cut(s) 310
Van91I CCANNNNNTGG 1 cut(s) 256
VpaK11BI GGWCC 1 cut(s) 928
XapI RAATTY 2 cut(s) 316, 375
XspI CTAG 2 cut(s) 146, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.