Rh2AG043900

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0015514
Physical Location & Seq
Reverse (-)
3395557 .. 3399151
3595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG043900.1

Sequence Viewer

Length: 1071 bp
ATGAAAATATTGAGAGCTGCTTCTGTTTTCCTTTGTATTTTCTTCTGCTTCTTTGTTTGCTCATCTCATGCAACAGATACCCTTAGGCCTGGTCAGTATTTGACGAGATATGAAACCTTGGTTTCTGATGGTGGAGTATTTGAGCTAGGATTTTTCTACAGCCCCACTAAGTCAGTCGAAGGATACTTGGGAATCTGGTTGAAGAATGACAAAAAGAAAAGGCCAGTTTGGGTGGCAAATAGAGATGACCATCTTATGGATCCCTATGCACTTCTCTACATCAACCCTCAGGGAATGGTGATCAGTGATAATAGAAATTCACCGTTTTTTTTCACTTATGGAGCAACTGCAACGACTAATAGGACAAGCGCAAGGATTCTTGACTCAGGAAACCTAATCCTGATGGAAGGAGGAAAGACGGTGTGGCAGAGCTTTGATAACCTGGTAGATACATTTCTTCCTGGAATGAAAATAGGGATGGTTAGCACAACCAATGCTCAGTTGAAGCCTATGTTTCTTTTATCATGGAGAAGCGCACATGACCCTACTCGTGGTTTTCTTGGTTTAAGCTTGGATAACAGCACAACTCAAGTCGATGTCTGGCACGATGATGGTAAAGAGAAACCAATTGGCCATTGGGATGGCCATGAGTTCAAATTTGTTTTCAAAACCCAATCAGATAATTACAATTTCAGCTATGTACAGAACAGCAAGGAGCGTTATCTTACTTTCAACAACAAAGAAAGTAGTGTATATTCATGGTTTGCATTGGCTTCGGATGGTAAGATACATGAGTTCATGATGGTAGGACAGAAGATTTCGGTTGTGAGTCATTCGGTATGTGGTGACTGCTGGTTGGTGTCATCAAGAGATAGGAAGCTGTTGCTGGTCATCAAAGTTGCGTCAAAAAACCAAAGAGCATTTCAAAAGGTCCTAGCAATTCGGCATCATTTACCCAATAATTCATTTCCCTACACACCTCATTCCAAAAATTCAGTTAATGACATAATACCCTCTTCGTCTTCATCATCGTCGTTTGTGGTCTTGTCCATAATAGATGATCTGGACTGA

Protein Analysis

356

Amino Acids

40.35

Weight (kDa)

8.66

Isoelectric Point (pI)

25.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 76 - 177 1.4e-21 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015514)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03780
malus_domestica MD02G1036400.v1.1 MD15G1176600.v1.1
prunus_persica Prupe.7G239000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0089191
rosa_laevigata RLG00000016003
rosa_multiflora Rmu_sc0008322.1_g000027 Rmu_sc0008909.1_g000009
rosa_roxburghii Rroxscaffold_2G00152160
rosa_rugosa Rorug01G0488300
rosa_samantha Rh2AG043900 Rh2BG042600 Rh2CG044100 Rh2DG042900
rosa_wichuraiana Rw2G003920 Rw2G003930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 256
AclWI GGATC 2 cut(s) 254, 267
AcoI YGGCCR 2 cut(s) 631, 643
AcsI RAATTY 3 cut(s) 316, 656, 991
AfaI GTAC 1 cut(s) 702
AfiI CCNNNNNNNGG 2 cut(s) 256, 551
AgsI TTSAA 6 cut(s) 202, 505, 655, 667, 733, 926
AjnI CCWGG 3 cut(s) 88, 441, 460
AjuI GAANNNNNNNTTGG 2 cut(s) 906, 938
AluBI AGCT 6 cut(s) 17, 145, 432, 570, 696, 880
AluI AGCT 6 cut(s) 17, 145, 432, 570, 696, 880
AlwI GGATC 2 cut(s) 254, 267
AoxI GGCC 4 cut(s) 86, 221, 631, 643
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 3 cut(s) 316, 656, 991
AspLEI GCGC 2 cut(s) 371, 536
AspS9I GGNCC 1 cut(s) 931
AsuHPI GGTGA 3 cut(s) 310, 312, 857
AvaII GGWCC 1 cut(s) 931
AxyI CCTNAGG 2 cut(s) 83, 288
BaeI ACNNNNGTAYC 2 cut(s) 779, 812
BalI TGGCCA 2 cut(s) 633, 645
BamHI GGATCC 1 cut(s) 259
BauI CACGAG 1 cut(s) 549
BbsI GAAGAC 1 cut(s) 1014
BbvI GCAGC 1 cut(s) 4
BccI CCATC 8 cut(s) 122, 258, 397, 472, 605, 635, 773, 796
BcgI CGANNNNNNTGC 2 cut(s) 756, 790
BciT130I CCWGG 3 cut(s) 90, 443, 462
BciVI GTATCC 1 cut(s) 176
BclI TGATCA 1 cut(s) 300
BfaI CTAG 2 cut(s) 146, 935
BfmI CTRYAG 1 cut(s) 157
BfuI GTATCC 1 cut(s) 176
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
Bme1390I CCNGG 3 cut(s) 90, 443, 462
Bme18I GGWCC 1 cut(s) 931
BmgT120I GGNCC 1 cut(s) 931
BmiI GGNNCC 1 cut(s) 261
BmrFI CCNGG 3 cut(s) 90, 443, 462
BmsI GCATC 1 cut(s) 955
BpiI GAAGAC 1 cut(s) 1014
BpuEI CTTGAG 1 cut(s) 573
BsaBI GATNNNNATC 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 117
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 551
Bse1I ACTGG 1 cut(s) 224
Bse21I CCTNAGG 2 cut(s) 83, 288
Bse8I GATNNNNATC 1 cut(s) 249
BseBI CCWGG 3 cut(s) 90, 443, 462
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 3 cut(s) 483, 646, 784
BseJI GATNNNNATC 1 cut(s) 249
BseLI CCNNNNNNNGG 2 cut(s) 256, 551
BseMII CTCAG 3 cut(s) 302, 399, 512
BseNI ACTGG 1 cut(s) 224
BseXI GCAGC 1 cut(s) 4
BshFI GGCC 4 cut(s) 88, 223, 633, 645
BslI CCNNNNNNNGG 2 cut(s) 256, 551
BsnI GGCC 4 cut(s) 88, 223, 633, 645
Bsp1407I TGTACA 1 cut(s) 700
Bsp143I GATC 3 cut(s) 259, 300, 1060
BspANI GGCC 4 cut(s) 88, 223, 633, 645
BspCNI CTCAG 3 cut(s) 301, 398, 511
BspHI TCATGA 1 cut(s) 798
BspLI GGNNCC 1 cut(s) 261
BspPI GGATC 2 cut(s) 254, 267
BsrGI TGTACA 1 cut(s) 700
BsrI ACTGG 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 3 cut(s) 259, 300, 1060
BssSI CACGAG 1 cut(s) 549
BssT1I CCWWGG 1 cut(s) 117
Bst2BI CACGAG 1 cut(s) 549
Bst2UI CCWGG 3 cut(s) 90, 443, 462
Bst4CI ACNGT 2 cut(s) 324, 421
Bst6I CTCTTC 1 cut(s) 1021
BstAUI TGTACA 1 cut(s) 700
BstDEI CTNAG 5 cut(s) 83, 168, 288, 385, 498
BstF5I GGATG 3 cut(s) 483, 646, 784
BstHHI GCGC 2 cut(s) 371, 536
BstKTI GATC 3 cut(s) 262, 303, 1063
BstMBI GATC 3 cut(s) 259, 300, 1060
BstNI CCWGG 3 cut(s) 90, 443, 462
BstSCI CCNGG 3 cut(s) 88, 441, 460
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 4
BstV2I GAAGAC 1 cut(s) 1014
BstX2I RGATCY 1 cut(s) 259
BstXI CCANNNNNNTGG 1 cut(s) 641
BstYI RGATCY 1 cut(s) 259
Bsu36I CCTNAGG 2 cut(s) 83, 288
BsuI GTATCC 1 cut(s) 176
BsuRI GGCC 4 cut(s) 88, 223, 633, 645
BtsCI GGATG 3 cut(s) 483, 646, 784
BtsIMutI CAGTG 1 cut(s) 310
CciI TCATGA 1 cut(s) 798
CfoI GCGC 2 cut(s) 371, 536
Cfr13I GGNCC 1 cut(s) 931
CseI GACGC 1 cut(s) 891
CsiI ACCWGGT 1 cut(s) 441
Csp6I GTAC 1 cut(s) 701
CviAII CATG 7 cut(s) 68, 525, 539, 647, 759, 791, 799
CviQI GTAC 1 cut(s) 701
DdeI CTNAG 5 cut(s) 83, 168, 288, 385, 498
DpnI GATC 3 cut(s) 261, 302, 1062
DpnII GATC 3 cut(s) 259, 300, 1060
EaeI YGGCCR 2 cut(s) 631, 643
Eam1104I CTCTTC 1 cut(s) 1021
EarI CTCTTC 1 cut(s) 1021
Eco130I CCWWGG 1 cut(s) 117
Eco147I AGGCCT 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 931
Eco81I CCTNAGG 2 cut(s) 83, 288
EcoO109I RGGNCCY 1 cut(s) 931
EcoRII CCWGG 3 cut(s) 88, 441, 460
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 7 cut(s) 71, 528, 542, 650, 762, 794, 802
FatI CATG 7 cut(s) 67, 524, 538, 646, 758, 790, 798
FbaI TGATCA 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 18
FokI GGATG 3 cut(s) 490, 653, 791
Fsp4HI GCNGC 1 cut(s) 18
FspBI CTAG 2 cut(s) 146, 935
GlaI GCGC 2 cut(s) 370, 535
GluI GCNGC 1 cut(s) 18
HaeIII GGCC 4 cut(s) 88, 223, 633, 645
HgaI GACGC 1 cut(s) 891
HhaI GCGC 2 cut(s) 371, 536
Hin1II CATG 7 cut(s) 71, 528, 542, 650, 762, 794, 802
Hin6I GCGC 2 cut(s) 369, 534
HinP1I GCGC 2 cut(s) 369, 534
HindIII AAGCTT 1 cut(s) 568
HinfI GANTC 4 cut(s) 192, 376, 383, 829
HphI GGTGA 3 cut(s) 310, 312, 857
Hpy188I TCNGA 3 cut(s) 127, 679, 778
Hpy188III TCNNGA 6 cut(s) 380, 387, 400, 799, 867, 1064
Hpy99I CGWCG 1 cut(s) 1036
HpyAV CCTTC 2 cut(s) 173, 401
HpyCH4III ACNGT 2 cut(s) 324, 421
HpyCH4V TGCA 4 cut(s) 71, 269, 350, 767
HpyF3I CTNAG 5 cut(s) 83, 168, 288, 385, 498
Hsp92II CATG 7 cut(s) 71, 528, 542, 650, 762, 794, 802
HspAI GCGC 2 cut(s) 369, 534
Ksp22I TGATCA 1 cut(s) 300
Kzo9I GATC 3 cut(s) 259, 300, 1060
LmnI GCTCC 2 cut(s) 341, 715
Lsp1109I GCAGC 1 cut(s) 4
LweI GCATC 1 cut(s) 955
MabI ACCWGGT 1 cut(s) 441
MaeI CTAG 2 cut(s) 146, 935
MaeIII GTNAC 1 cut(s) 845
MalI GATC 3 cut(s) 261, 302, 1062
MboI GATC 3 cut(s) 259, 300, 1060
MboII GAAGA 6 cut(s) 34, 214, 449, 826, 1008, 1014
MfeI CAATTG 1 cut(s) 627
MflI RGATCY 1 cut(s) 259
MlsI TGGCCA 2 cut(s) 633, 645
MluCI AATT 8 cut(s) 316, 627, 656, 682, 688, 939, 961, 991
MluNI TGGCCA 2 cut(s) 633, 645
MlyI GAGTC 2 cut(s) 377, 838
MnlI CCTC 4 cut(s) 297, 404, 990, 1024
Mox20I TGGCCA 2 cut(s) 633, 645
MscI TGGCCA 2 cut(s) 633, 645
MseI TTAA 2 cut(s) 566, 999
MslI CAYNNNNRTG 2 cut(s) 609, 639
Msp20I TGGCCA 2 cut(s) 633, 645
MspR9I CCNGG 3 cut(s) 90, 443, 462
MunI CAATTG 1 cut(s) 627
MvaI CCWGG 3 cut(s) 90, 443, 462
NdeII GATC 3 cut(s) 259, 300, 1060
NlaIII CATG 7 cut(s) 71, 528, 542, 650, 762, 794, 802
NlaIV GGNNCC 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 845
PagI TCATGA 1 cut(s) 798
PceI AGGCCT 1 cut(s) 88
PfeI GAWTC 2 cut(s) 192, 376
PflMI CCANNNNNTGG 1 cut(s) 256
PfoI TCCNGGA 1 cut(s) 460
PkrI GCNGC 1 cut(s) 19
PleI GAGTC 2 cut(s) 377, 837
PpsI GAGTC 2 cut(s) 377, 837
PpuMI RGGWCCY 1 cut(s) 931
Psp5II RGGWCCY 1 cut(s) 931
Psp6I CCWGG 3 cut(s) 88, 441, 460
PspGI CCWGG 3 cut(s) 88, 441, 460
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 931
PspPPI RGGWCCY 1 cut(s) 931
PsuI RGATCY 1 cut(s) 259
RsaI GTAC 1 cut(s) 702
RsaNI GTAC 1 cut(s) 701
RseI CAYNNNNRTG 2 cut(s) 609, 639
SaqAI TTAA 2 cut(s) 566, 999
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 3 cut(s) 259, 300, 1060
Sau96I GGNCC 1 cut(s) 931
SchI GAGTC 2 cut(s) 377, 838
ScrFI CCNGG 3 cut(s) 90, 443, 462
SexAI ACCWGGT 1 cut(s) 441
SfaNI GCATC 1 cut(s) 955
SfcI CTRYAG 1 cut(s) 157
SinI GGWCC 1 cut(s) 931
SmiMI CAYNNNNRTG 2 cut(s) 609, 639
SmlI CTYRAG 1 cut(s) 588
SmoI CTYRAG 1 cut(s) 588
Sse9I AATT 8 cut(s) 316, 627, 656, 682, 688, 939, 961, 991
SseBI AGGCCT 1 cut(s) 88
SspI AATATT 1 cut(s) 9
SspMI CTAG 2 cut(s) 146, 935
StuI AGGCCT 1 cut(s) 88
StyD4I CCNGG 3 cut(s) 88, 441, 460
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 2 cut(s) 324, 421
TaqI TCGA 2 cut(s) 177, 594
TasI AATT 8 cut(s) 316, 627, 656, 682, 688, 939, 961, 991
TatI WGTACW 1 cut(s) 700
TfiI GAWTC 2 cut(s) 192, 376
Tru1I TTAA 2 cut(s) 566, 999
Tru9I TTAA 2 cut(s) 566, 999
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 1 cut(s) 845
TseI GCWGC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 845
TspDTI ATGAA 7 cut(s) 17, 126, 482, 747, 787, 954, 1014
TspRI CASTG 1 cut(s) 310
Van91I CCANNNNNTGG 1 cut(s) 256
VpaK11BI GGWCC 1 cut(s) 931
XapI RAATTY 3 cut(s) 316, 656, 991
XcmI CCANNNNNNNNNTGG 1 cut(s) 633
XspI CTAG 2 cut(s) 146, 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.