FvH4_1g06810

Histone acetyltransferase type B catalytic

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
3583889 .. 3587694
3806 bp
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UTR
Exon/CDS
Intron
FvH4_1g06810.t1

Sequence Viewer

Length: 1383 bp
ATGGGCCAGAAGAAAGGACCCCCCGCCGACGACACTCTCGAGCCCAAGAAACGCCGCCGCGTCGGCTTCTCCAGCGTCGATGCTGGAGTGGAGGCCAAGGATTGCATCAAGATTTTTCTGGTTTCTAGCAAAGAAGAGGTGGATGCTGCAAACAGTTTTTGTTTGGATCCGGTTGACTTGAATAGCTTTTTTGAGGAAGATGGGAAGATATATGGTTACAAAGGATTGAAGATTACCATATGGGTTAGCAGTATATCGTTTGATGCATATGCTGATATTGCATTTGAGAGCACAGCTGATGGAGGTAAAGGAATCACAGATTTGAAATCAGCTCTTGAGAAAATATTTGGTGAGACCCTTGTTGCCAGTAAAGAGGAGTTCCTTCAGACCTTCTCAACTCAGAGAAATTTCATCAGATCCATGATCTCAGACGGGGAGGTGTTGCAGCACAAGGCTTCATCTACTTCTGATGTGGAGGCTATCCGCATGGTTGTGGGCAAGTCAGCTGCTGGACCCCTATACAGTCGCTTGGTTCCTCTTGTGTTTCTTCTTGTTGATGGTGCCAGTGCAATTGATGTATTGGATCCATGTTGGGAGTTGTATCTCCTGGTCAAGAAGAAAACAGATGAGCAAGGGGACATCTATAATATATTGCTCGGCTTTACAGCTCTGTATCGTTTTTATCATTATCCAGACAGTTCTCGGTTGCGACTTAGCCAGATTCTCGTATTGCCTCCTTACCAGCATAAGGGTTATGGACGGTACATTCTAGAGGTTCTCAATCATGTTGCAGTATCTGAAGATGTCTATGACTTCACAGTAGAAGAACCATTGGACTACTTCCAACATGTACGCACTTGTGTTGATGTGCTACGCCTTCAGAAATTAGATTCTGTTCGCAATGCAGTCAATTTGGCTGTTTCAAATCTGACACGAGGAAAACTGTCAAAGAAAACGAGCATCCCTCGACTGATGCCAGCCACAAGAGTCATTGAGGATGTGAGGAAAAGCTTGAAGATCAACAAGAAACAATTTCTGCAATGTTGGGAGGTCTTCATCTATCTTGGCCTCGATCCAGTGAGCAAGTACATGGAGGATTTTGTGAGCATTGTTTCTAATCGCATGAAGGAAGATATCATAGGAAAAGAATCTGGGACTGGTGGGAAGCAAGTAATTGAAGTTCCAAGCGAATACATACCGGAGATGTCATTTGTTCTGTTCAAGTCCAATGCTGGTGAAGCTACTAGTACTGTTCAGGTAGATGAAAACAAGCCGACACAGGCGGAGCAACTTCAGGAGTTAGTTGATGAGAGAGTGAATGAGATCAAATCAATAGCAGAGAAAGTATCTCAGCATAGCACGAGTATGGTCGAGTCATCTTAA

Protein Analysis

461

Amino Acids

51.55

Weight (kDa)

5.37

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hat1_N PF10394 30 - 186 5.5e-28 Histone acetyl transferase HAT1 N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 560
AccII CGCG 1 cut(s) 60
AciI CCGC 5 cut(s) 24, 55, 58, 484, 1283
AclWI GGATC 6 cut(s) 161, 174, 411, 578, 591, 1067
AcsI RAATTY 1 cut(s) 406
AcuI CTGAAG 4 cut(s) 368, 819, 863, 1277
AfaI GTAC 4 cut(s) 764, 852, 1088, 1249
AfiI CCNNNNNNNGG 1 cut(s) 748
AflIII ACRYGT 1 cut(s) 847
AgsI TTSAA 7 cut(s) 181, 229, 325, 924, 1015, 1178, 1222
AhlI ACTAGT 1 cut(s) 1244
AjnI CCWGG 1 cut(s) 606
AluBI AGCT 7 cut(s) 186, 296, 332, 506, 668, 1011, 1241
AluI AGCT 7 cut(s) 186, 296, 332, 506, 668, 1011, 1241
Alw21I GWGCWC 1 cut(s) 293
Alw26I GTCTC 1 cut(s) 347
AlwI GGATC 6 cut(s) 161, 174, 411, 578, 591, 1067
AlwNI CAGNNNCTG 2 cut(s) 509, 797
Ama87I CYCGRG 1 cut(s) 38
AoxI GGCC 3 cut(s) 4, 93, 1066
ApeKI GCWGC 3 cut(s) 146, 445, 506
ApoI RAATTY 1 cut(s) 406
AspS9I GGNCC 3 cut(s) 4, 17, 512
AsuHPI GGTGA 2 cut(s) 362, 1247
AvaI CYCGRG 1 cut(s) 38
AvaII GGWCC 2 cut(s) 17, 512
BamHI GGATCC 2 cut(s) 166, 583
BanI GGYRCC 1 cut(s) 560
BanII GRGCYC 1 cut(s) 45
BauI CACGAG 2 cut(s) 933, 1360
BbsI GAAGAC 1 cut(s) 1045
Bbv12I GWGCWC 1 cut(s) 293
BbvI GCAGC 3 cut(s) 133, 457, 493
BccI CCATC 3 cut(s) 194, 293, 551
BciT130I CCWGG 1 cut(s) 608
BcoDI GTCTC 1 cut(s) 347
BcuI ACTAGT 1 cut(s) 1244
BfaI CTAG 3 cut(s) 126, 770, 1245
BglI GCCNNNNNGGC 1 cut(s) 63
BisI GCNGC 5 cut(s) 55, 58, 147, 446, 507
BlsI GCNGC 5 cut(s) 56, 59, 148, 447, 508
BmcAI AGTACT 1 cut(s) 1249
Bme1390I CCNGG 1 cut(s) 608
Bme18I GGWCC 2 cut(s) 17, 512
BmeT110I CYCGRG 1 cut(s) 38
BmgT120I GGNCC 3 cut(s) 4, 17, 512
BmiI GGNNCC 6 cut(s) 19, 168, 514, 534, 562, 585
BmrFI CCNGG 1 cut(s) 608
BmsI GCATC 6 cut(s) 70, 114, 133, 253, 963, 969
BpiI GAAGAC 1 cut(s) 1045
BplI GAGNNNNNCTC 2 cut(s) 949, 981
BpmI CTGGAG 2 cut(s) 55, 105
BpuEI CTTGAG 1 cut(s) 356
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 96
BsaWI WCCGGW 2 cut(s) 169, 1198
Bsc4I CCNNNNNNNGG 1 cut(s) 748
Bse1I ACTGG 4 cut(s) 366, 564, 1076, 1162
Bse3DI GCAATG 2 cut(s) 907, 1046
BseBI CCWGG 1 cut(s) 608
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 3 cut(s) 148, 960, 1003
BseLI CCNNNNNNNGG 1 cut(s) 748
BseMI GCAATG 2 cut(s) 907, 1046
BseMII CTCAG 3 cut(s) 413, 441, 1364
BseNI ACTGG 4 cut(s) 366, 564, 1076, 1162
BseRI GAGGAG 1 cut(s) 389
BseXI GCAGC 3 cut(s) 133, 457, 493
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 3 cut(s) 6, 95, 1068
BshNI GGYRCC 1 cut(s) 560
BsiHKAI GWGCWC 1 cut(s) 293
BsiHKCI CYCGRG 1 cut(s) 38
BsiSI CCGG 2 cut(s) 170, 1199
BslFI GGGAC 2 cut(s) 650, 1168
BslI CCNNNNNNNGG 1 cut(s) 748
BsmAI GTCTC 1 cut(s) 347
BsmFI GGGAC 2 cut(s) 650, 1168
BsnI GGCC 3 cut(s) 6, 95, 1068
Bso31I GGTCTC 1 cut(s) 347
BsoBI CYCGRG 1 cut(s) 38
Bsp1286I GDGCHC 2 cut(s) 45, 293
Bsp143I GATC 7 cut(s) 166, 416, 423, 583, 1017, 1072, 1323
BspACI CCGC 5 cut(s) 24, 55, 58, 484, 1283
BspANI GGCC 3 cut(s) 6, 95, 1068
BspCNI CTCAG 3 cut(s) 412, 440, 1363
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 6 cut(s) 19, 168, 514, 534, 562, 585
BspPI GGATC 6 cut(s) 161, 174, 411, 578, 591, 1067
BspT107I GGYRCC 1 cut(s) 560
BspTNI GGTCTC 1 cut(s) 347
BsrDI GCAATG 2 cut(s) 907, 1046
BsrI ACTGG 4 cut(s) 366, 564, 1076, 1162
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 7 cut(s) 166, 416, 423, 583, 1017, 1072, 1323
BssSI CACGAG 2 cut(s) 933, 1360
BssT1I CCWWGG 1 cut(s) 96
Bst2BI CACGAG 2 cut(s) 933, 1360
Bst2UI CCWGG 1 cut(s) 608
Bst4CI ACNGT 7 cut(s) 155, 524, 698, 762, 820, 945, 1252
Bst6I CTCTTC 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 978
BstDEI CTNAG 4 cut(s) 399, 427, 713, 1350
BstF5I GGATG 3 cut(s) 148, 960, 1003
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 7 cut(s) 169, 419, 426, 586, 1020, 1075, 1326
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 7 cut(s) 166, 416, 423, 583, 1017, 1072, 1323
BstMWI GCNNNNNNNGC 4 cut(s) 63, 72, 278, 1238
BstNI CCWGG 1 cut(s) 608
BstNSI RCATGY 1 cut(s) 851
BstSCI CCNGG 1 cut(s) 606
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 3 cut(s) 133, 457, 493
BstV2I GAAGAC 1 cut(s) 1045
BstX2I RGATCY 3 cut(s) 166, 416, 583
BstYI RGATCY 3 cut(s) 166, 416, 583
BsuRI GGCC 3 cut(s) 6, 95, 1068
BtsCI GGATG 3 cut(s) 148, 960, 1003
BtsIMutI CAGTG 2 cut(s) 571, 1083
Cac8I GCNNGC 1 cut(s) 978
CaiI CAGNNNCTG 2 cut(s) 509, 797
Cfr13I GGNCC 3 cut(s) 4, 17, 512
CseI GACGC 2 cut(s) 49, 64
Csp6I GTAC 4 cut(s) 763, 851, 1087, 1248
CviAII CATG 7 cut(s) 421, 487, 588, 785, 848, 1090, 1123
CviQI GTAC 4 cut(s) 763, 851, 1087, 1248
DdeI CTNAG 4 cut(s) 399, 427, 713, 1350
DpnI GATC 7 cut(s) 168, 418, 425, 585, 1019, 1074, 1325
DpnII GATC 7 cut(s) 166, 416, 423, 583, 1017, 1072, 1323
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
EciI GGCGGA 1 cut(s) 1298
Eco130I CCWWGG 1 cut(s) 96
Eco24I GRGCYC 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 347
Eco32I GATATC 1 cut(s) 1135
Eco47I GGWCC 2 cut(s) 17, 512
Eco57I CTGAAG 4 cut(s) 368, 819, 863, 1277
Eco88I CYCGRG 1 cut(s) 38
EcoO109I RGGNCCY 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 606
EcoRV GATATC 1 cut(s) 1135
EcoT14I CCWWGG 1 cut(s) 96
EcoT22I ATGCAT 1 cut(s) 268
EcoT38I GRGCYC 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 7 cut(s) 424, 490, 591, 788, 851, 1093, 1126
FaqI GGGAC 2 cut(s) 650, 1168
FatI CATG 7 cut(s) 420, 486, 587, 784, 847, 1089, 1122
FauI CCCGC 1 cut(s) 31
FauNDI CATATG 2 cut(s) 239, 268
Fnu4HI GCNGC 5 cut(s) 55, 58, 147, 446, 507
FokI GGATG 3 cut(s) 155, 947, 1010
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 5 cut(s) 55, 58, 147, 446, 507
FspBI CTAG 3 cut(s) 126, 770, 1245
GluI GCNGC 5 cut(s) 55, 58, 147, 446, 507
GsuI CTGGAG 2 cut(s) 55, 105
HaeIII GGCC 3 cut(s) 6, 95, 1068
HapII CCGG 2 cut(s) 170, 1199
HgaI GACGC 2 cut(s) 49, 64
Hin1II CATG 7 cut(s) 424, 490, 591, 788, 851, 1093, 1126
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HindIII AAGCTT 1 cut(s) 1009
HinfI GANTC 6 cut(s) 312, 721, 890, 987, 1148, 1373
HpaII CCGG 2 cut(s) 170, 1199
HphI GGTGA 2 cut(s) 362, 1247
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 8 cut(s) 387, 402, 416, 430, 469, 799, 882, 930
Hpy188III TCNNGA 7 cut(s) 38, 109, 335, 613, 692, 770, 1295
Hpy8I GTNNAC 1 cut(s) 175
Hpy99I CGWCG 3 cut(s) 32, 65, 80
HpyAV CCTTC 4 cut(s) 392, 400, 887, 1120
HpyCH4III ACNGT 7 cut(s) 155, 524, 698, 762, 820, 945, 1252
HpyCH4V TGCA 9 cut(s) 105, 149, 266, 281, 445, 569, 791, 905, 1039
HpyF10VI GCNNNNNNNGC 4 cut(s) 63, 72, 278, 1238
HpyF3I CTNAG 4 cut(s) 399, 427, 713, 1350
Hsp92II CATG 7 cut(s) 424, 490, 591, 788, 851, 1093, 1126
Kzo9I GATC 7 cut(s) 166, 416, 423, 583, 1017, 1072, 1323
LmnI GCTCC 1 cut(s) 1285
Lsp1109I GCAGC 3 cut(s) 133, 457, 493
LweI GCATC 6 cut(s) 70, 114, 133, 253, 963, 969
MaeI CTAG 3 cut(s) 126, 770, 1245
MaeIII GTNAC 1 cut(s) 215
MalI GATC 7 cut(s) 168, 418, 425, 585, 1019, 1074, 1325
MboI GATC 7 cut(s) 166, 416, 423, 583, 1017, 1072, 1323
MfeI CAATTG 1 cut(s) 570
MflI RGATCY 3 cut(s) 166, 416, 583
MhlI GDGCHC 2 cut(s) 45, 293
MluCI AATT 6 cut(s) 406, 570, 884, 910, 1031, 1173
MlyI GAGTC 2 cut(s) 996, 1382
MmeI TCCRAC 1 cut(s) 868
Mph1103I ATGCAT 1 cut(s) 268
MseI TTAA 1 cut(s) 1381
MslI CAYNNNNRTG 2 cut(s) 491, 1364
MspA1I CMGCKG 2 cut(s) 296, 506
MspI CCGG 2 cut(s) 170, 1199
MspR9I CCNGG 1 cut(s) 608
MunI CAATTG 1 cut(s) 570
MvaI CCWGG 1 cut(s) 608
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 4 cut(s) 63, 72, 278, 1238
NdeI CATATG 2 cut(s) 239, 268
NdeII GATC 7 cut(s) 166, 416, 423, 583, 1017, 1072, 1323
NlaIII CATG 7 cut(s) 424, 490, 591, 788, 851, 1093, 1126
NlaIV GGNNCC 6 cut(s) 19, 168, 514, 534, 562, 585
NmeAIII GCCGAG 1 cut(s) 636
NsiI ATGCAT 1 cut(s) 268
NspI RCATGY 1 cut(s) 851
PaeR7I CTCGAG 1 cut(s) 38
PciI ACATGT 1 cut(s) 847
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PfeI GAWTC 4 cut(s) 312, 721, 890, 1148
PkrI GCNGC 5 cut(s) 56, 59, 148, 447, 508
PleI GAGTC 2 cut(s) 995, 1381
PpsI GAGTC 2 cut(s) 995, 1381
PpuMI RGGWCCY 1 cut(s) 17
PscI ACATGT 1 cut(s) 847
Psp5II RGGWCCY 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 606
PspGI CCWGG 1 cut(s) 606
PspN4I GGNNCC 6 cut(s) 19, 168, 514, 534, 562, 585
PspPI GGNCC 3 cut(s) 4, 17, 512
PspPPI RGGWCCY 1 cut(s) 17
PsrI GAACNNNNNNTAC 2 cut(s) 1164, 1196
PstNI CAGNNNCTG 2 cut(s) 509, 797
PsuI RGATCY 3 cut(s) 166, 416, 583
PvuII CAGCTG 2 cut(s) 296, 506
RsaI GTAC 4 cut(s) 764, 852, 1088, 1249
RsaNI GTAC 4 cut(s) 763, 851, 1087, 1248
RseI CAYNNNNRTG 2 cut(s) 491, 1364
SaqAI TTAA 1 cut(s) 1381
SatI GCNGC 5 cut(s) 55, 58, 147, 446, 507
Sau3AI GATC 7 cut(s) 166, 416, 423, 583, 1017, 1072, 1323
Sau96I GGNCC 3 cut(s) 4, 17, 512
ScaI AGTACT 1 cut(s) 1249
SchI GAGTC 2 cut(s) 996, 1382
ScrFI CCNGG 1 cut(s) 608
SduI GDGCHC 2 cut(s) 45, 293
SfaNI GCATC 6 cut(s) 70, 114, 133, 253, 963, 969
Sfr274I CTCGAG 1 cut(s) 38
SinI GGWCC 2 cut(s) 17, 512
SlaI CTCGAG 1 cut(s) 38
SmiMI CAYNNNNRTG 2 cut(s) 491, 1364
SmlI CTYRAG 2 cut(s) 38, 335
SmoI CTYRAG 2 cut(s) 38, 335
SpeI ACTAGT 1 cut(s) 1244
Sse9I AATT 6 cut(s) 406, 570, 884, 910, 1031, 1173
SsiI CCGC 5 cut(s) 24, 55, 58, 484, 1283
SspI AATATT 1 cut(s) 345
SspMI CTAG 3 cut(s) 126, 770, 1245
StyD4I CCNGG 1 cut(s) 606
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 7 cut(s) 155, 524, 698, 762, 820, 945, 1252
TaqI TCGA 5 cut(s) 39, 78, 967, 1071, 1371
TasI AATT 6 cut(s) 406, 570, 884, 910, 1031, 1173
TatI WGTACW 2 cut(s) 1086, 1247
TauI GCSGC 2 cut(s) 57, 60
TfiI GAWTC 4 cut(s) 312, 721, 890, 1148
Tru1I TTAA 1 cut(s) 1381
Tru9I TTAA 1 cut(s) 1381
TscAI CASTG 2 cut(s) 571, 1083
TseI GCWGC 3 cut(s) 146, 445, 506
TspDTI ATGAA 5 cut(s) 400, 447, 1045, 1139, 1278
TspRI CASTG 2 cut(s) 571, 1083
VpaK11BI GGWCC 2 cut(s) 17, 512
XapI RAATTY 1 cut(s) 406
XbaI TCTAGA 1 cut(s) 769
XceI RCATGY 1 cut(s) 851
XhoI CTCGAG 1 cut(s) 38
XspI CTAG 3 cut(s) 126, 770, 1245
ZrmI AGTACT 1 cut(s) 1249
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.