Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009346

Physical Location & Seq

Genomic Coordinates Forward (+)

7335013 .. 7336088

Gene Structure 1076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG087300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGTTGTGGGCAAGACAGCTGCTGGACCCCTTTACAGTCACTTGATTCGTCTTGTTGATGGTGCCAGTCCAATTGATCTTCTGGATCCAAGTTGGGAGTTGTATCTCCTGGTCGAGAAGAAAACAGATGAGCAAGGGGGCATCTACAATATATTGCTTGGCTTTACAGCTCTGTATCGTTTTTATCATTATCCTGACAGTTCTCGGTTGCGACTTAGCCAGATCCTGGTATTGCCTCCTTACCAGCATAAGGGTTATGGACGGTACATTCTAGAAGTTCTCAATCATGTTGCAGTATCAGAAGACATCTATGACTTCACAGTAGAAGAACCATTGGACTACTTTCAACATGTACGCACTTGTGTTGATGTACTATGCCTTCAGAAATTAGATTCTGTTCGCAATGCAATCAATTTGGCTGTTTCAAATCTGACACGAGGAAAACTGTCAAAGAAAACGAGCATCCCTCGACTGATGCCAGCCACAAGAGTCATTGAGGATGTGAAGAAAAGGTTGAAAATCAACAAGAAACAATCTTCAATGTTGGGATGTTTTCATCTATCTTGGCCTCGATCCAGTGGACAAGTACATGGAGGATTTTTGAGCATTGTTTCTAATCGGATGAAGGAAGATCTCATAGGAAAAGAATATGGGACTGGTGGGAAGCAAGTAATTGAAGTTCCAAGCGAGTACATACCGGAGATGTCATTTGTTATGTTCAAGTCCAATGCAGGTGAAGCTACTAGTACTGTTCAGGTAGATGAAAATCAACCAAATCAGGAGGAGCAACTCCAGCAGTTGGTTGATGAGAGAGTGAATGAGATCAAATCAATAGCAGATAAAGTATCTCAGCATTGCATAAGCATTGTGGAGTCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031974 GO:0031981 GO:0034212 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0061733 GO:0070013 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko05034 map05034

Pfam Domains

Protein Families

Acetyltransf_1 Hat1_N

Protein Analysis

293

Amino Acids

33.08

Weight (kDa)

6.46

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56740 AT5G56740
fragaria_vesca	FvH4_1g06810
malus_domestica	MD02G1072700.v1.1 MD15G1202500.v1.1
prunus_persica	Prupe.7G214700_v2.0.a1
pyrus_communis	pycom02g05690 pycom15g17990
rosa_chinensis	RchiOBHm_Chr2g0092581
rosa_laevigata	RLG00000016325
rosa_multiflora	Rmu_sc0018576.1_g000001 Rmu_sc0019023.1_g000002
rosa_roxburghii	Rroxscaffold_2G00147670 Rroxscaffold_2G00147690 Rroxscaffold_2G00148950
rosa_rugosa	Rorug02G0027700
rosa_samantha	Rh2AG073600 Rh2AG087300 Rh2BG074500 Rh2CG075600 Rh2DG072700
rosa_wichuraiana	Rw2G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	722
Acc36I	ACCTGC	1 cut(s)	722
AccB1I	GGYRCC	1 cut(s)	62
AccB7I	CCANNNNNTGG	2 cut(s)	226, 799
AclWI	GGATC	4 cut(s)	80, 93, 217, 567
AcuI	CTGAAG	1 cut(s)	365
AfaI	GTAC	6 cut(s)	266, 354, 372, 588, 692, 748
AfiI	CCNNNNNNNGG	3 cut(s)	226, 250, 799
AflIII	ACRYGT	1 cut(s)	349
AgsI	TTSAA	6 cut(s)	347, 426, 517, 540, 677, 721
AhlI	ACTAGT	1 cut(s)	743
AjnI	CCWGG	2 cut(s)	108, 225
AluBI	AGCT	3 cut(s)	20, 170, 740
AluI	AGCT	3 cut(s)	20, 170, 740
AlwI	GGATC	4 cut(s)	80, 93, 217, 567
AlwNI	CAGNNNCTG	2 cut(s)	23, 226
AoxI	GGCC	1 cut(s)	566
ApeKI	GCWGC	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	746
AvaII	GGWCC	1 cut(s)	26
BamHI	GGATCC	1 cut(s)	85
BanI	GGYRCC	1 cut(s)	62
BarI	GAAGNNNNNNTAC	2 cut(s)	363, 395
BauI	CACGAG	1 cut(s)	435
BbsI	GAAGAC	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	7
BccI	CCATC	1 cut(s)	53
BciT130I	CCWGG	2 cut(s)	110, 227
BcuI	ACTAGT	1 cut(s)	743
BfaI	CTAG	2 cut(s)	272, 744
BfuAI	ACCTGC	1 cut(s)	722
BglII	AGATCT	1 cut(s)	631
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
BmcAI	AGTACT	1 cut(s)	748
Bme1390I	CCNGG	2 cut(s)	110, 227
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	3 cut(s)	28, 64, 87
BmrFI	CCNGG	2 cut(s)	110, 227
BmsI	GCATC	3 cut(s)	150, 465, 471
BpiI	GAAGAC	1 cut(s)	309
BplI	GAGNNNNNCTC	2 cut(s)	451, 483
BpmI	CTGGAG	1 cut(s)	776
BsaBI	GATNNNNATC	1 cut(s)	765
BsaWI	WCCGGW	1 cut(s)	697
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 250, 799
Bse1I	ACTGG	3 cut(s)	66, 576, 661
Bse3DI	GCAATG	2 cut(s)	409, 853
Bse8I	GATNNNNATC	1 cut(s)	765
BseBI	CCWGG	2 cut(s)	110, 227
BseGI	GGATG	4 cut(s)	462, 505, 554, 627
BseJI	GATNNNNATC	1 cut(s)	765
BseLI	CCNNNNNNNGG	3 cut(s)	226, 250, 799
BseMI	GCAATG	2 cut(s)	409, 853
BseMII	CTCAG	1 cut(s)	863
BseNI	ACTGG	3 cut(s)	66, 576, 661
BseRI	GAGGAG	1 cut(s)	797
BseXI	GCAGC	1 cut(s)	7
BshFI	GGCC	1 cut(s)	568
BshNI	GGYRCC	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	698
BslFI	GGGAC	1 cut(s)	667
BslI	CCNNNNNNNGG	3 cut(s)	226, 250, 799
BsmFI	GGGAC	1 cut(s)	667
BsnI	GGCC	1 cut(s)	568
Bsp143I	GATC	6 cut(s)	76, 85, 222, 572, 631, 822
BspANI	GGCC	1 cut(s)	568
BspCNI	CTCAG	1 cut(s)	862
BspLI	GGNNCC	3 cut(s)	28, 64, 87
BspMI	ACCTGC	1 cut(s)	722
BspPI	GGATC	4 cut(s)	80, 93, 217, 567
BspT107I	GGYRCC	1 cut(s)	62
BsrDI	GCAATG	2 cut(s)	409, 853
BsrI	ACTGG	3 cut(s)	66, 576, 661
BssMI	GATC	6 cut(s)	76, 85, 222, 572, 631, 822
BssSI	CACGAG	1 cut(s)	435
Bst2BI	CACGAG	1 cut(s)	435
Bst2UI	CCWGG	2 cut(s)	110, 227
Bst4CI	ACNGT	6 cut(s)	38, 200, 264, 322, 447, 751
BstC8I	GCNNGC	1 cut(s)	480
BstDEI	CTNAG	2 cut(s)	215, 849
BstF5I	GGATG	4 cut(s)	462, 505, 554, 627
BstKTI	GATC	6 cut(s)	79, 88, 225, 575, 634, 825
BstMBI	GATC	6 cut(s)	76, 85, 222, 572, 631, 822
BstMWI	GCNNNNNNNGC	2 cut(s)	737, 793
BstNI	CCWGG	2 cut(s)	110, 227
BstNSI	RCATGY	1 cut(s)	353
BstSCI	CCNGG	2 cut(s)	108, 225
BstV1I	GCAGC	1 cut(s)	7
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	3 cut(s)	85, 222, 631
BstYI	RGATCY	3 cut(s)	85, 222, 631
BsuRI	GGCC	1 cut(s)	568
BtsCI	GGATG	4 cut(s)	462, 505, 554, 627
BtsIMutI	CAGTG	1 cut(s)	583
BveI	ACCTGC	1 cut(s)	722
Cac8I	GCNNGC	1 cut(s)	480
CaiI	CAGNNNCTG	2 cut(s)	23, 226
Cfr13I	GGNCC	1 cut(s)	26
Csp6I	GTAC	6 cut(s)	265, 353, 371, 587, 691, 747
CviAII	CATG	3 cut(s)	287, 350, 590
CviJI	RGCY	8 cut(s)	20, 162, 170, 219, 419, 482, 568, 740
CviKI_1	RGCY	8 cut(s)	20, 162, 170, 219, 419, 482, 568, 740
CviQI	GTAC	6 cut(s)	265, 353, 371, 587, 691, 747
DdeI	CTNAG	2 cut(s)	215, 849
DpnI	GATC	6 cut(s)	78, 87, 224, 574, 633, 824
DpnII	GATC	6 cut(s)	76, 85, 222, 572, 631, 822
Eco47I	GGWCC	1 cut(s)	26
Eco57I	CTGAAG	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	108, 225
FaeI	CATG	3 cut(s)	290, 353, 593
FaqI	GGGAC	1 cut(s)	667
FatI	CATG	3 cut(s)	286, 349, 589
Fnu4HI	GCNGC	1 cut(s)	21
FokI	GGATG	4 cut(s)	449, 512, 561, 634
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	2 cut(s)	272, 744
GluI	GCNGC	1 cut(s)	21
GsuI	CTGGAG	1 cut(s)	776
HaeIII	GGCC	1 cut(s)	568
HapII	CCGG	1 cut(s)	698
Hin1II	CATG	3 cut(s)	290, 353, 593
HinfI	GANTC	4 cut(s)	46, 392, 489, 872
HpaII	CCGG	1 cut(s)	698
HphI	GGTGA	1 cut(s)	746
Hpy166II	GTNNAC	1 cut(s)	581
Hpy188I	TCNGA	4 cut(s)	301, 384, 432, 621
Hpy188III	TCNNGA	5 cut(s)	83, 115, 194, 272, 779
Hpy8I	GTNNAC	1 cut(s)	581
HpyAV	CCTTC	2 cut(s)	389, 619
HpyCH4III	ACNGT	6 cut(s)	38, 200, 264, 322, 447, 751
HpyCH4V	TGCA	4 cut(s)	293, 407, 731, 858
HpyF10VI	GCNNNNNNNGC	2 cut(s)	737, 793
HpyF3I	CTNAG	2 cut(s)	215, 849
Hsp92II	CATG	3 cut(s)	290, 353, 593
Kzo9I	GATC	6 cut(s)	76, 85, 222, 572, 631, 822
LmnI	GCTCC	1 cut(s)	784
Lsp1109I	GCAGC	1 cut(s)	7
LweI	GCATC	3 cut(s)	150, 465, 471
MaeI	CTAG	2 cut(s)	272, 744
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	6 cut(s)	78, 87, 224, 574, 633, 824
MboI	GATC	6 cut(s)	76, 85, 222, 572, 631, 822
MboII	GAAGA	7 cut(s)	71, 130, 314, 338, 517, 528, 641
MfeI	CAATTG	1 cut(s)	72
MflI	RGATCY	3 cut(s)	85, 222, 631
MluCI	AATT	4 cut(s)	72, 386, 412, 672
MlyI	GAGTC	2 cut(s)	498, 881
MnlI	CCTC	7 cut(s)	246, 431, 477, 490, 579, 587, 775
MseI	TTAA	1 cut(s)	880
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	1 cut(s)	698
MspR9I	CCNGG	2 cut(s)	110, 227
MunI	CAATTG	1 cut(s)	72
MvaI	CCWGG	2 cut(s)	110, 227
MwoI	GCNNNNNNNGC	2 cut(s)	737, 793
NdeII	GATC	6 cut(s)	76, 85, 222, 572, 631, 822
NlaIII	CATG	3 cut(s)	290, 353, 593
NlaIV	GGNNCC	3 cut(s)	28, 64, 87
NmuCI	GTSAC	1 cut(s)	38
NspI	RCATGY	1 cut(s)	353
PaqCI	CACCTGC	1 cut(s)	722
PciI	ACATGT	1 cut(s)	349
PfeI	GAWTC	2 cut(s)	46, 392
PflMI	CCANNNNNTGG	2 cut(s)	226, 799
PkrI	GCNGC	1 cut(s)	22
PleI	GAGTC	2 cut(s)	497, 880
PpsI	GAGTC	2 cut(s)	497, 880
PscI	ACATGT	1 cut(s)	349
Psp6I	CCWGG	2 cut(s)	108, 225
PspGI	CCWGG	2 cut(s)	108, 225
PspN4I	GGNNCC	3 cut(s)	28, 64, 87
PspPI	GGNCC	1 cut(s)	26
PsrI	GAACNNNNNNTAC	2 cut(s)	663, 695
PstNI	CAGNNNCTG	2 cut(s)	23, 226
PsuI	RGATCY	3 cut(s)	85, 222, 631
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	6 cut(s)	266, 354, 372, 588, 692, 748
RsaNI	GTAC	6 cut(s)	265, 353, 371, 587, 691, 747
SaqAI	TTAA	1 cut(s)	880
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	6 cut(s)	76, 85, 222, 572, 631, 822
Sau96I	GGNCC	1 cut(s)	26
ScaI	AGTACT	1 cut(s)	748
SchI	GAGTC	2 cut(s)	498, 881
ScrFI	CCNGG	2 cut(s)	110, 227
SetI	ASST	6 cut(s)	22, 172, 515, 736, 742, 759
SfaNI	GCATC	3 cut(s)	150, 465, 471
SinI	GGWCC	1 cut(s)	26
SpeI	ACTAGT	1 cut(s)	743
Sse9I	AATT	4 cut(s)	72, 386, 412, 672
SspMI	CTAG	2 cut(s)	272, 744
StyD4I	CCNGG	2 cut(s)	108, 225
TaaI	ACNGT	6 cut(s)	38, 200, 264, 322, 447, 751
TaqI	TCGA	3 cut(s)	114, 469, 571
TasI	AATT	4 cut(s)	72, 386, 412, 672
TatI	WGTACW	4 cut(s)	370, 586, 690, 746
TfiI	GAWTC	2 cut(s)	46, 392
Tru1I	TTAA	1 cut(s)	880
Tru9I	TTAA	1 cut(s)	880
TscAI	CASTG	1 cut(s)	583
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	3 cut(s)	545, 638, 777
TspRI	CASTG	1 cut(s)	583
Van91I	CCANNNNNTGG	2 cut(s)	226, 799
VpaK11BI	GGWCC	1 cut(s)	26
XbaI	TCTAGA	1 cut(s)	271
XceI	RCATGY	1 cut(s)	353
XspI	CTAG	2 cut(s)	272, 744
ZrmI	AGTACT	1 cut(s)	748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.