Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018576.1

Orthogroup ID

OG0009346

Physical Location & Seq

Genomic Coordinates Reverse (-)

220 .. 1781

Gene Structure 1562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018576.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

atgatacttggtagtgttctccagaaagtttttggtgagacccttgttgacagtcaagaagagttccttcaaaccttctcaactcagagaaatttcattagatccattatctcaaatggggaggtgttgcagcacaaggcttcatctacttctgatgtggaggttattcgcatggttgtgggcaagacagctgctggacccctctacagtcgcttgattcctcttgtttttcttcttgttgatggtgccagtccaattgatgttttggatccaagttgggagttgtatctcctggtcgagaagaaaacagatgagcaaggggacatctacaatatattgcttggctttacagctctgtatcgtttttatcattatcctgacagttctcggttgcgacttagccagatcctggtattgcctccttaccagcataagggttatggacggtacattctagaggttctcaatcatgttgcagtatctgaagacatctatgacttcacagtagaagaaccattggactactttcaacatgtacgcacttgtgttgatgtactacgccttcagaaattagattctgttcgcgatgcagtcaatttggctgtttcaaatctgacacgaggaaaactgtcaaagaaaacgagcatccctcgactgatgccaaccacaagagtcattgaggatgtgaggaaaagcttgaaaatcaacaagaaacaatttcttcaatgttgggaggttttcatctatcttggcctcgatccagtggacaagtacatggaggattttgtgagcattgtttctaatcgcatgaaggaagatctcatcggaaaagaatctgggaccggtggaaagcaagtaattgaagttccaagcgaatacataccagagatgtcatttgttatgttcaagtccaatgctggtgaagctactagtactgttcaggtagatgaaaatcaaccaaatcaggaggaacaactccagcagctagttgatgagagagtgaatgagatcaaatcaatagcagagaaagtatctcagcatcgcacaagcattgtcgagtcatcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031974 GO:0031981 GO:0034212 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0061733 GO:0070013 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko05034 map05034

Pfam Domains

Protein Families

Acetyltransf_1 Hat1_N

Protein Analysis

355

Amino Acids

40.44

Weight (kDa)

5.26

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56740 AT5G56740
fragaria_vesca	FvH4_1g06810
malus_domestica	MD02G1072700.v1.1 MD15G1202500.v1.1
prunus_persica	Prupe.7G214700_v2.0.a1
pyrus_communis	pycom02g05690 pycom15g17990
rosa_chinensis	RchiOBHm_Chr2g0092581
rosa_laevigata	RLG00000016325
rosa_multiflora	Rmu_sc0018576.1_g000001 Rmu_sc0019023.1_g000002
rosa_roxburghii	Rroxscaffold_2G00147670 Rroxscaffold_2G00147690 Rroxscaffold_2G00148950
rosa_rugosa	Rorug02G0027700
rosa_samantha	Rh2AG073600 Rh2AG087300 Rh2BG074500 Rh2CG075600 Rh2DG072700
rosa_wichuraiana	Rw2G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	245
AccB7I	CCANNNNNTGG	1 cut(s)	409
AccII	CGCG	1 cut(s)	585
AclWI	GGATC	5 cut(s)	96, 263, 276, 400, 752
AcsI	RAATTY	1 cut(s)	91
AcuI	CTGAAG	2 cut(s)	504, 548
AfaI	GTAC	5 cut(s)	449, 537, 555, 773, 934
AfiI	CCNNNNNNNGG	2 cut(s)	409, 433
AflIII	ACRYGT	1 cut(s)	532
AgeI	ACCGGT	1 cut(s)	842
AgsI	TTSAA	7 cut(s)	71, 530, 609, 700, 725, 863, 907
AhlI	ACTAGT	1 cut(s)	929
AjnI	CCWGG	2 cut(s)	291, 408
AluBI	AGCT	5 cut(s)	191, 353, 696, 926, 985
AluI	AGCT	5 cut(s)	191, 353, 696, 926, 985
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	5 cut(s)	96, 263, 276, 400, 752
AlwNI	CAGNNNCTG	3 cut(s)	194, 409, 482
AoxI	GGCC	1 cut(s)	751
ApeKI	GCWGC	3 cut(s)	130, 191, 982
ApoI	RAATTY	1 cut(s)	91
AsiGI	ACCGGT	1 cut(s)	842
AspS9I	GGNCC	2 cut(s)	197, 840
AsuHPI	GGTGA	2 cut(s)	47, 932
AvaII	GGWCC	2 cut(s)	197, 840
BamHI	GGATCC	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	245
BarI	GAAGNNNNNNTAC	2 cut(s)	546, 578
BauI	CACGAG	1 cut(s)	618
BbsI	GAAGAC	1 cut(s)	492
BbvI	GCAGC	3 cut(s)	142, 178, 994
BccI	CCATC	1 cut(s)	236
BciT130I	CCWGG	2 cut(s)	293, 410
BcoDI	GTCTC	1 cut(s)	32
BcuI	ACTAGT	1 cut(s)	929
BfaI	CTAG	3 cut(s)	455, 930, 986
BfmI	CTRYAG	1 cut(s)	205
BglII	AGATCT	1 cut(s)	817
BisI	GCNGC	3 cut(s)	131, 192, 983
BlsI	GCNGC	3 cut(s)	132, 193, 984
BmcAI	AGTACT	1 cut(s)	934
Bme1390I	CCNGG	2 cut(s)	293, 410
Bme18I	GGWCC	2 cut(s)	197, 840
BmgT120I	GGNCC	2 cut(s)	197, 840
BmiI	GGNNCC	4 cut(s)	199, 247, 270, 841
BmrFI	CCNGG	2 cut(s)	293, 410
BmsI	GCATC	4 cut(s)	577, 648, 654, 1048
BpiI	GAAGAC	1 cut(s)	492
BplI	GAGNNNNNCTC	2 cut(s)	634, 666
BpmI	CTGGAG	2 cut(s)	5, 962
BsaBI	GATNNNNATC	1 cut(s)	951
BsaI	GGTCTC	1 cut(s)	32
BsaWI	WCCGGW	1 cut(s)	842
Bsc4I	CCNNNNNNNGG	2 cut(s)	409, 433
Bse118I	RCCGGY	1 cut(s)	842
Bse1I	ACTGG	2 cut(s)	249, 761
Bse8I	GATNNNNATC	1 cut(s)	951
BseBI	CCWGG	2 cut(s)	293, 410
BseGI	GGATG	2 cut(s)	645, 688
BseJI	GATNNNNATC	1 cut(s)	951
BseLI	CCNNNNNNNGG	2 cut(s)	409, 433
BseMII	CTCAG	2 cut(s)	98, 1049
BseNI	ACTGG	2 cut(s)	249, 761
BseXI	GCAGC	3 cut(s)	142, 178, 994
Bsh1236I	CGCG	1 cut(s)	585
BshFI	GGCC	1 cut(s)	753
BshNI	GGYRCC	1 cut(s)	245
BshTI	ACCGGT	1 cut(s)	842
BsiSI	CCGG	1 cut(s)	843
BslFI	GGGAC	2 cut(s)	335, 853
BslI	CCNNNNNNNGG	2 cut(s)	409, 433
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	2 cut(s)	335, 853
BsnI	GGCC	1 cut(s)	753
Bso31I	GGTCTC	1 cut(s)	32
Bsp143I	GATC	6 cut(s)	101, 268, 405, 757, 817, 1008
Bsp68I	TCGCGA	1 cut(s)	585
BspANI	GGCC	1 cut(s)	753
BspCNI	CTCAG	2 cut(s)	97, 1048
BspFNI	CGCG	1 cut(s)	585
BspLI	GGNNCC	4 cut(s)	199, 247, 270, 841
BspPI	GGATC	5 cut(s)	96, 263, 276, 400, 752
BspT107I	GGYRCC	1 cut(s)	245
BspTNI	GGTCTC	1 cut(s)	32
BsrFI	RCCGGY	1 cut(s)	842
BsrI	ACTGG	2 cut(s)	249, 761
BssAI	RCCGGY	1 cut(s)	842
BssMI	GATC	6 cut(s)	101, 268, 405, 757, 817, 1008
BssSI	CACGAG	1 cut(s)	618
Bst2BI	CACGAG	1 cut(s)	618
Bst2UI	CCWGG	2 cut(s)	293, 410
Bst4CI	ACNGT	7 cut(s)	53, 209, 383, 447, 505, 630, 937
Bst6I	CTCTTC	1 cut(s)	54
BstDEI	CTNAG	3 cut(s)	84, 398, 1035
BstF5I	GGATG	2 cut(s)	645, 688
BstFNI	CGCG	1 cut(s)	585
BstKTI	GATC	6 cut(s)	104, 271, 408, 760, 820, 1011
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	6 cut(s)	101, 268, 405, 757, 817, 1008
BstMWI	GCNNNNNNNGC	1 cut(s)	923
BstNI	CCWGG	2 cut(s)	293, 410
BstNSI	RCATGY	1 cut(s)	536
BstSCI	CCNGG	2 cut(s)	291, 408
BstSFI	CTRYAG	1 cut(s)	205
BstUI	CGCG	1 cut(s)	585
BstV1I	GCAGC	3 cut(s)	142, 178, 994
BstV2I	GAAGAC	1 cut(s)	492
BstX2I	RGATCY	4 cut(s)	101, 268, 405, 817
BstYI	RGATCY	4 cut(s)	101, 268, 405, 817
BsuRI	GGCC	1 cut(s)	753
BtgZI	GCGATG	2 cut(s)	600, 1025
BtsCI	GGATG	2 cut(s)	645, 688
BtsIMutI	CAGTG	1 cut(s)	768
BtuMI	TCGCGA	1 cut(s)	585
CaiI	CAGNNNCTG	3 cut(s)	194, 409, 482
Cfr10I	RCCGGY	1 cut(s)	842
Cfr13I	GGNCC	2 cut(s)	197, 840
Csp6I	GTAC	5 cut(s)	448, 536, 554, 772, 933
CspAI	ACCGGT	1 cut(s)	842
CviAII	CATG	5 cut(s)	172, 470, 533, 775, 808
CviQI	GTAC	5 cut(s)	448, 536, 554, 772, 933
DdeI	CTNAG	3 cut(s)	84, 398, 1035
DpnI	GATC	6 cut(s)	103, 270, 407, 759, 819, 1010
DpnII	GATC	6 cut(s)	101, 268, 405, 757, 817, 1008
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	32
Eco47I	GGWCC	2 cut(s)	197, 840
Eco57I	CTGAAG	2 cut(s)	504, 548
EcoRII	CCWGG	2 cut(s)	291, 408
FaeI	CATG	5 cut(s)	175, 473, 536, 778, 811
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FaqI	GGGAC	2 cut(s)	335, 853
FatI	CATG	5 cut(s)	171, 469, 532, 774, 807
Fnu4HI	GCNGC	3 cut(s)	131, 192, 983
FokI	GGATG	2 cut(s)	632, 695
Fsp4HI	GCNGC	3 cut(s)	131, 192, 983
FspBI	CTAG	3 cut(s)	455, 930, 986
GluI	GCNGC	3 cut(s)	131, 192, 983
GsuI	CTGGAG	2 cut(s)	5, 962
HaeIII	GGCC	1 cut(s)	753
HapII	CCGG	1 cut(s)	843
Hin1II	CATG	5 cut(s)	175, 473, 536, 778, 811
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HindIII	AAGCTT	1 cut(s)	694
HinfI	GANTC	5 cut(s)	217, 575, 672, 833, 1058
HpaII	CCGG	1 cut(s)	843
HphI	GGTGA	2 cut(s)	47, 932
Hpy166II	GTNNAC	2 cut(s)	49, 766
Hpy188I	TCNGA	6 cut(s)	87, 154, 484, 567, 615, 827
Hpy188III	TCNNGA	7 cut(s)	22, 56, 298, 377, 455, 584, 965
Hpy8I	GTNNAC	2 cut(s)	49, 766
HpyAV	CCTTC	4 cut(s)	77, 85, 572, 805
HpyCH4III	ACNGT	7 cut(s)	53, 209, 383, 447, 505, 630, 937
HpyCH4V	TGCA	3 cut(s)	130, 476, 590
HpyF10VI	GCNNNNNNNGC	1 cut(s)	923
HpyF3I	CTNAG	3 cut(s)	84, 398, 1035
Hsp92II	CATG	5 cut(s)	175, 473, 536, 778, 811
Kzo9I	GATC	6 cut(s)	101, 268, 405, 757, 817, 1008
Lsp1109I	GCAGC	3 cut(s)	142, 178, 994
LweI	GCATC	4 cut(s)	577, 648, 654, 1048
MaeI	CTAG	3 cut(s)	455, 930, 986
MalI	GATC	6 cut(s)	103, 270, 407, 759, 819, 1010
MboI	GATC	6 cut(s)	101, 268, 405, 757, 817, 1008
MboII	GAAGA	7 cut(s)	71, 224, 313, 497, 521, 713, 827
MfeI	CAATTG	1 cut(s)	255
MflI	RGATCY	4 cut(s)	101, 268, 405, 817
MluCI	AATT	6 cut(s)	91, 255, 569, 595, 716, 858
MlyI	GAGTC	2 cut(s)	681, 1067
MseI	TTAA	1 cut(s)	1066
MslI	CAYNNNNRTG	1 cut(s)	176
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	1 cut(s)	843
MspR9I	CCNGG	2 cut(s)	293, 410
MunI	CAATTG	1 cut(s)	255
MvaI	CCWGG	2 cut(s)	293, 410
MvnI	CGCG	1 cut(s)	585
MwoI	GCNNNNNNNGC	1 cut(s)	923
NdeII	GATC	6 cut(s)	101, 268, 405, 757, 817, 1008
NlaIII	CATG	5 cut(s)	175, 473, 536, 778, 811
NlaIV	GGNNCC	4 cut(s)	199, 247, 270, 841
NruI	TCGCGA	1 cut(s)	585
NspI	RCATGY	1 cut(s)	536
PciI	ACATGT	1 cut(s)	532
PfeI	GAWTC	3 cut(s)	217, 575, 833
PflMI	CCANNNNNTGG	1 cut(s)	409
PinAI	ACCGGT	1 cut(s)	842
PkrI	GCNGC	3 cut(s)	132, 193, 984
PleI	GAGTC	2 cut(s)	680, 1066
PpsI	GAGTC	2 cut(s)	680, 1066
PscI	ACATGT	1 cut(s)	532
Psp6I	CCWGG	2 cut(s)	291, 408
PspGI	CCWGG	2 cut(s)	291, 408
PspN4I	GGNNCC	4 cut(s)	199, 247, 270, 841
PspPI	GGNCC	2 cut(s)	197, 840
PsrI	GAACNNNNNNTAC	2 cut(s)	849, 881
PstNI	CAGNNNCTG	3 cut(s)	194, 409, 482
PsuI	RGATCY	4 cut(s)	101, 268, 405, 817
PvuII	CAGCTG	1 cut(s)	191
RruI	TCGCGA	1 cut(s)	585
RsaI	GTAC	5 cut(s)	449, 537, 555, 773, 934
RsaNI	GTAC	5 cut(s)	448, 536, 554, 772, 933
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	1066
SatI	GCNGC	3 cut(s)	131, 192, 983
Sau3AI	GATC	6 cut(s)	101, 268, 405, 757, 817, 1008
Sau96I	GGNCC	2 cut(s)	197, 840
ScaI	AGTACT	1 cut(s)	934
SchI	GAGTC	2 cut(s)	681, 1067
ScrFI	CCNGG	2 cut(s)	293, 410
SfaNI	GCATC	4 cut(s)	577, 648, 654, 1048
SfcI	CTRYAG	1 cut(s)	205
SinI	GGWCC	2 cut(s)	197, 840
SmiMI	CAYNNNNRTG	1 cut(s)	176
SpeI	ACTAGT	1 cut(s)	929
Sse9I	AATT	6 cut(s)	91, 255, 569, 595, 716, 858
SspMI	CTAG	3 cut(s)	455, 930, 986
StyD4I	CCNGG	2 cut(s)	291, 408
TaaI	ACNGT	7 cut(s)	53, 209, 383, 447, 505, 630, 937
TaqI	TCGA	4 cut(s)	297, 652, 756, 1056
TasI	AATT	6 cut(s)	91, 255, 569, 595, 716, 858
TatI	WGTACW	3 cut(s)	553, 771, 932
TfiI	GAWTC	3 cut(s)	217, 575, 833
Tru1I	TTAA	1 cut(s)	1066
Tru9I	TTAA	1 cut(s)	1066
TscAI	CASTG	1 cut(s)	768
TseI	GCWGC	3 cut(s)	130, 191, 982
TspDTI	ATGAA	5 cut(s)	85, 132, 730, 824, 963
TspRI	CASTG	1 cut(s)	768
Van91I	CCANNNNNTGG	1 cut(s)	409
VpaK11BI	GGWCC	2 cut(s)	197, 840
XapI	RAATTY	1 cut(s)	91
XbaI	TCTAGA	1 cut(s)	454
XceI	RCATGY	1 cut(s)	536
XcmI	CCANNNNNNNNNTGG	1 cut(s)	29
XspI	CTAG	3 cut(s)	455, 930, 986
ZrmI	AGTACT	1 cut(s)	934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.