Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009346

Physical Location & Seq

Genomic Coordinates Reverse (-)

85407326 .. 85408477

Gene Structure 1152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00147690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGCTGGAGTGGAGGCCAAAGATTGCATCAAGATTTACCTGGACAGTGTCAGAAGACATCTATGACTTCACAGTAGAAGAACCATTGGACTACTTTCAACATGTACGCACTTGTGTTGATGTACTACGCCTTCAGAAATTAGATTCTGTTCGCAATGCAGTCAATTTGGCTGTTTCAAATCTGACAAGAGGAAAACTGTCAAAGAAAACGAGCATCCCTCGACTGATGCCAGCCACAAGAGTCATTGAGGATGTGAAGAAAAGGTTGAAAATCAACAAGAAACAATTTCTTCAATGTTGGGATGTTTTCATCTATCTTGGCCTCGATCCAGTGGACAAGTACATGGAGGATTTTGTGAGCATTGTTTCTAATCAGATGAAGGAAGATCTCATAGGAAAAGAATATGGGACTGGTGGGAAGCAAGTAATTGAAGTTCCAAGCGAGTACATACCGGAGATGTCATTTGTTATGTTCAAGTCCAATGCAGGTGAAGCTACTAGTACTGTTCAGGTAGATGAAAATCAACCAAATCAGGAGAAGCAACTCCAGCAGTTGGTTGATGAGAGAGTGAATAGATCAAATCAATCGCAGATAAAGTATCTCAGCATTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031974 GO:0031981 GO:0034212 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0061733 GO:0070013 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko05034 map05034

Pfam Domains

Protein Families

Acetyltransf_1 Hat1_N

Protein Analysis

204

Amino Acids

23.65

Weight (kDa)

6.63

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56740 AT5G56740
fragaria_vesca	FvH4_1g06810
malus_domestica	MD02G1072700.v1.1 MD15G1202500.v1.1
prunus_persica	Prupe.7G214700_v2.0.a1
pyrus_communis	pycom02g05690 pycom15g17990
rosa_chinensis	RchiOBHm_Chr2g0092581
rosa_laevigata	RLG00000016325
rosa_multiflora	Rmu_sc0018576.1_g000001 Rmu_sc0019023.1_g000002
rosa_roxburghii	Rroxscaffold_2G00147670 Rroxscaffold_2G00147690 Rroxscaffold_2G00148950
rosa_rugosa	Rorug02G0027700
rosa_samantha	Rh2AG073600 Rh2AG087300 Rh2BG074500 Rh2CG075600 Rh2DG072700
rosa_wichuraiana	Rw2G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	476
Acc36I	ACCTGC	1 cut(s)	476
AccB7I	CCANNNNNTGG	1 cut(s)	553
AclWI	GGATC	1 cut(s)	320
AcuI	CTGAAG	1 cut(s)	116
AfaI	GTAC	5 cut(s)	105, 123, 341, 446, 502
AfiI	CCNNNNNNNGG	1 cut(s)	553
AflIII	ACRYGT	1 cut(s)	100
AgsI	TTSAA	6 cut(s)	98, 177, 268, 293, 431, 475
AhlI	ACTAGT	1 cut(s)	497
AjnI	CCWGG	1 cut(s)	38
AluBI	AGCT	1 cut(s)	494
AluI	AGCT	1 cut(s)	494
AlwI	GGATC	1 cut(s)	320
AoxI	GGCC	2 cut(s)	14, 319
AsuHPI	GGTGA	1 cut(s)	500
BarI	GAAGNNNNNNTAC	2 cut(s)	114, 146
BbsI	GAAGAC	1 cut(s)	60
BciT130I	CCWGG	1 cut(s)	40
BcuI	ACTAGT	1 cut(s)	497
BfaI	CTAG	1 cut(s)	498
BfuAI	ACCTGC	1 cut(s)	476
BglII	AGATCT	1 cut(s)	385
BmcAI	AGTACT	1 cut(s)	502
Bme1390I	CCNGG	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	40
BmsI	GCATC	3 cut(s)	35, 216, 222
BpiI	GAAGAC	1 cut(s)	60
BplI	GAGNNNNNCTC	2 cut(s)	202, 234
BpmI	CTGGAG	2 cut(s)	26, 530
BsaBI	GATNNNNATC	1 cut(s)	519
BsaWI	WCCGGW	1 cut(s)	451
Bsc4I	CCNNNNNNNGG	1 cut(s)	553
Bse1I	ACTGG	2 cut(s)	329, 415
Bse3DI	GCAATG	2 cut(s)	160, 606
Bse8I	GATNNNNATC	1 cut(s)	519
BseBI	CCWGG	1 cut(s)	40
BseGI	GGATG	3 cut(s)	213, 256, 307
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	1 cut(s)	553
BseMI	GCAATG	2 cut(s)	160, 606
BseNI	ACTGG	2 cut(s)	329, 415
BshFI	GGCC	2 cut(s)	16, 321
BsiSI	CCGG	1 cut(s)	452
BslFI	GGGAC	1 cut(s)	421
BslI	CCNNNNNNNGG	1 cut(s)	553
BsmFI	GGGAC	1 cut(s)	421
BsnI	GGCC	2 cut(s)	16, 321
Bsp143I	GATC	3 cut(s)	325, 385, 575
BspANI	GGCC	2 cut(s)	16, 321
BspCNI	CTCAG	1 cut(s)	615
BspMI	ACCTGC	1 cut(s)	476
BspPI	GGATC	1 cut(s)	320
BsrDI	GCAATG	2 cut(s)	160, 606
BsrI	ACTGG	2 cut(s)	329, 415
BssMI	GATC	3 cut(s)	325, 385, 575
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	4 cut(s)	46, 73, 198, 505
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	1 cut(s)	602
BstF5I	GGATG	3 cut(s)	213, 256, 307
BstKTI	GATC	3 cut(s)	328, 388, 578
BstMBI	GATC	3 cut(s)	325, 385, 575
BstMWI	GCNNNNNNNGC	2 cut(s)	491, 547
BstNI	CCWGG	1 cut(s)	40
BstNSI	RCATGY	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	38
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	2 cut(s)	16, 321
BtsCI	GGATG	3 cut(s)	213, 256, 307
BtsIMutI	CAGTG	2 cut(s)	51, 336
BveI	ACCTGC	1 cut(s)	476
Cac8I	GCNNGC	1 cut(s)	231
Csp6I	GTAC	5 cut(s)	104, 122, 340, 445, 501
CviAII	CATG	2 cut(s)	101, 343
CviJI	RGCY	5 cut(s)	16, 170, 233, 321, 494
CviKI_1	RGCY	5 cut(s)	16, 170, 233, 321, 494
CviQI	GTAC	5 cut(s)	104, 122, 340, 445, 501
DdeI	CTNAG	1 cut(s)	602
DpnI	GATC	3 cut(s)	327, 387, 577
DpnII	GATC	3 cut(s)	325, 385, 575
Eco57I	CTGAAG	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	38
FaeI	CATG	2 cut(s)	104, 346
FaiI	YATR	8 cut(s)	63, 102, 344, 392, 405, 449, 470, 613
FaqI	GGGAC	1 cut(s)	421
FatI	CATG	2 cut(s)	100, 342
FokI	GGATG	3 cut(s)	200, 263, 314
FspBI	CTAG	1 cut(s)	498
GsuI	CTGGAG	2 cut(s)	26, 530
HaeIII	GGCC	2 cut(s)	16, 321
HapII	CCGG	1 cut(s)	452
Hin1II	CATG	2 cut(s)	104, 346
HinfI	GANTC	2 cut(s)	143, 240
HpaII	CCGG	1 cut(s)	452
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	4 cut(s)	52, 135, 183, 375
Hpy188III	TCNNGA	2 cut(s)	30, 533
Hpy8I	GTNNAC	1 cut(s)	334
HpyAV	CCTTC	2 cut(s)	140, 373
HpyCH4III	ACNGT	4 cut(s)	46, 73, 198, 505
HpyCH4V	TGCA	4 cut(s)	26, 158, 485, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	491, 547
HpyF3I	CTNAG	1 cut(s)	602
Hsp92II	CATG	2 cut(s)	104, 346
Kzo9I	GATC	3 cut(s)	325, 385, 575
LweI	GCATC	3 cut(s)	35, 216, 222
MaeI	CTAG	1 cut(s)	498
MalI	GATC	3 cut(s)	327, 387, 577
MboI	GATC	3 cut(s)	325, 385, 575
MboII	GAAGA	5 cut(s)	65, 89, 268, 281, 395
MflI	RGATCY	1 cut(s)	385
MluCI	AATT	4 cut(s)	137, 163, 284, 426
MlyI	GAGTC	1 cut(s)	249
MnlI	CCTC	6 cut(s)	6, 182, 228, 241, 332, 340
MspI	CCGG	1 cut(s)	452
MspR9I	CCNGG	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	40
MwoI	GCNNNNNNNGC	2 cut(s)	491, 547
NdeII	GATC	3 cut(s)	325, 385, 575
NlaIII	CATG	2 cut(s)	104, 346
NspI	RCATGY	1 cut(s)	104
PaqCI	CACCTGC	1 cut(s)	476
PciI	ACATGT	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	143
PflFI	GACNNNGTC	1 cut(s)	46
PflMI	CCANNNNNTGG	1 cut(s)	553
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
PscI	ACATGT	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	38
PsrI	GAACNNNNNNTAC	2 cut(s)	417, 449
PsuI	RGATCY	1 cut(s)	385
PsyI	GACNNNGTC	1 cut(s)	46
RsaI	GTAC	5 cut(s)	105, 123, 341, 446, 502
RsaNI	GTAC	5 cut(s)	104, 122, 340, 445, 501
Sau3AI	GATC	3 cut(s)	325, 385, 575
ScaI	AGTACT	1 cut(s)	502
SchI	GAGTC	1 cut(s)	249
ScrFI	CCNGG	1 cut(s)	40
SetI	ASST	5 cut(s)	41, 266, 490, 496, 513
SfaNI	GCATC	3 cut(s)	35, 216, 222
SpeI	ACTAGT	1 cut(s)	497
Sse9I	AATT	4 cut(s)	137, 163, 284, 426
SspMI	CTAG	1 cut(s)	498
StyD4I	CCNGG	1 cut(s)	38
TaaI	ACNGT	4 cut(s)	46, 73, 198, 505
TaqI	TCGA	2 cut(s)	220, 324
TasI	AATT	4 cut(s)	137, 163, 284, 426
TatI	WGTACW	4 cut(s)	121, 339, 444, 500
TfiI	GAWTC	1 cut(s)	143
TscAI	CASTG	2 cut(s)	51, 336
TspDTI	ATGAA	3 cut(s)	298, 392, 531
TspRI	CASTG	2 cut(s)	51, 336
Tth111I	GACNNNGTC	1 cut(s)	46
Van91I	CCANNNNNTGG	1 cut(s)	553
XceI	RCATGY	1 cut(s)	104
XspI	CTAG	1 cut(s)	498
ZrmI	AGTACT	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.