Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0009346

Physical Location & Seq

Genomic Coordinates Reverse (-)

5576273 .. 5579447

Gene Structure 3175 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG072700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGATTCGGGAGCAGATGCTGGAGTGGAGGCCAAAGATTGCATCAAGATTTACCTGGTTTCTAGCAAAGAAGAGGTGGGCGCTCCAAACAGTTTTTGTTTAGATCCAGTTGACTTGAATAACTTTTTTGAGGAAGATGGGAAGATATATGGTTACAAAGGATTGAAGATTACCATATGGGTTAGCAGTATATCGTTTGATGCATATGCTGATATTGCATTTGAGAGCACAGCTGATGGAGGCAAAGGGATCACAGATTTGAAATCAGCTCTTGAGAAAGTTTTTGGTGAGACCCTTGTTGACAGTCAAGAAGAGTTCCTTCAAACCTTCTCAACTCAGAGAAATTTCATTAGATCCATTATCTCAAATGGGGAGGTGTTGCAGCACAAGGCTTCATCTACTTCTGATGTGGAGGTTATTCGCATGGTTGTGGGCAAGACAGCTGCTGGACCCCTCTACAGTCGCTTGATTCCTCTTGTTTTTCTTCTTGTTGATGGTGCCAGTCCAATTGATGTTTTGGATCCAAGTTGGGAGTTGTATCTCCTGGTCGAGAAGAAAACAGATGAGCAAGGGGACATCTACAATATATTGCTCGGCTTTACAGCTCTGTATCGTTTTTATCATTATCCTGACAGTTCTCGGTTGCGACTTAGCCAGATCCTGGTATTGCCTCCTTACCAGCATAAGGGTTATGGACGGTACATTCTAGAGGTTCTCAATCATGTTGCAGTATCTGAAGACATCTATGACTTCACAGTAGAAGAACCATTGGACTACTTTCAACATGTACGCACTTGTGTTGATGTACTACGCCTTCAGAAATTAGATTCTGTTCGCGATGCAGTCAATTTGGCTGTTTCAAATCTGACACGAGGAAAACTGTCAAAGAAAACGAGCATTCCTCGACTGATGCCAACCACAAGAGTCATTGAGGATGTGAGGAAAAGCTTGAAAATCAACAAGAAACAATTTCTTCAATGTTGGGAGGTTTTCATCTATCTTGGCCTCGATCCAGTGGACAAGTACATGGAGGATTTTGTGAGCATTGTTTCTAATCGCATGAAGGAAGATCTCATCGGAAAAGAATCTGGGACCGGTGGAAAGCAAGTAATTGAAGTTCCAAGCGAATACATACCAGAGATGTCATTTGTTATGTTCAAGTCCAATGCTGGTGAAGCTACTAGTACTGTTCAGGTAGATGAAAATCAACCAAATCAGGAGGAACAACTCCAGCAGCTAGTTGATGAGAGAGTGAATGAGATCAAATCAATAGCAGAGAAAGTATCTCAGCATCGCACAAGCATTGTCGAGTCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031974 GO:0031981 GO:0034212 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0061733 GO:0070013 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko05034 map05034

Pfam Domains

Protein Families

Acetyltransf_1 Hat1_N

Protein Analysis

439

Amino Acids

49.44

Weight (kDa)

4.88

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hat1_N	PF10394	9 - 165	2.2e-28	Histone acetyl transferase HAT1 N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56740 AT5G56740
fragaria_vesca	FvH4_1g06810
malus_domestica	MD02G1072700.v1.1 MD15G1202500.v1.1
prunus_persica	Prupe.7G214700_v2.0.a1
pyrus_communis	pycom02g05690 pycom15g17990
rosa_chinensis	RchiOBHm_Chr2g0092581
rosa_laevigata	RLG00000016325
rosa_multiflora	Rmu_sc0018576.1_g000001 Rmu_sc0019023.1_g000002
rosa_roxburghii	Rroxscaffold_2G00147670 Rroxscaffold_2G00147690 Rroxscaffold_2G00148950
rosa_rugosa	Rorug02G0027700
rosa_samantha	Rh2AG073600 Rh2AG087300 Rh2BG074500 Rh2CG075600 Rh2DG072700
rosa_wichuraiana	Rw2G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	497
AccB7I	CCANNNNNTGG	1 cut(s)	661
AccII	CGCG	1 cut(s)	837
AclWI	GGATC	7 cut(s)	98, 257, 348, 515, 528, 652, 1004
AcsI	RAATTY	1 cut(s)	343
AcuI	CTGAAG	2 cut(s)	756, 800
AfaI	GTAC	5 cut(s)	701, 789, 807, 1025, 1186
AfiI	CCNNNNNNNGG	2 cut(s)	661, 685
AflIII	ACRYGT	1 cut(s)	784
AgeI	ACCGGT	1 cut(s)	1094
AhlI	ACTAGT	1 cut(s)	1181
AjnI	CCWGG	3 cut(s)	54, 543, 660
AluBI	AGCT	7 cut(s)	233, 269, 443, 605, 948, 1178, 1237
AluI	AGCT	7 cut(s)	233, 269, 443, 605, 948, 1178, 1237
Alw21I	GWGCWC	1 cut(s)	230
Alw26I	GTCTC	1 cut(s)	284
AlwI	GGATC	7 cut(s)	98, 257, 348, 515, 528, 652, 1004
AlwNI	CAGNNNCTG	4 cut(s)	20, 446, 661, 734
AoxI	GGCC	2 cut(s)	30, 1003
ApeKI	GCWGC	3 cut(s)	382, 443, 1234
ApoI	RAATTY	1 cut(s)	343
AsiGI	ACCGGT	1 cut(s)	1094
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	2 cut(s)	449, 1092
AsuHPI	GGTGA	2 cut(s)	299, 1184
AvaII	GGWCC	2 cut(s)	449, 1092
BamHI	GGATCC	1 cut(s)	520
BanI	GGYRCC	1 cut(s)	497
BarI	GAAGNNNNNNTAC	2 cut(s)	798, 830
BauI	CACGAG	1 cut(s)	870
BbsI	GAAGAC	1 cut(s)	744
Bbv12I	GWGCWC	1 cut(s)	230
BbvI	GCAGC	3 cut(s)	394, 430, 1246
BccI	CCATC	3 cut(s)	131, 230, 488
BciT130I	CCWGG	3 cut(s)	56, 545, 662
BcoDI	GTCTC	1 cut(s)	284
BcuI	ACTAGT	1 cut(s)	1181
BfaI	CTAG	4 cut(s)	63, 707, 1182, 1238
BfmI	CTRYAG	1 cut(s)	457
BfoI	RGCGCY	1 cut(s)	84
BglII	AGATCT	1 cut(s)	1069
BisI	GCNGC	3 cut(s)	383, 444, 1235
BlsI	GCNGC	3 cut(s)	384, 445, 1236
BmcAI	AGTACT	1 cut(s)	1186
Bme1390I	CCNGG	3 cut(s)	56, 545, 662
Bme18I	GGWCC	2 cut(s)	449, 1092
BmgT120I	GGNCC	2 cut(s)	449, 1092
BmiI	GGNNCC	4 cut(s)	451, 499, 522, 1093
BmrFI	CCNGG	3 cut(s)	56, 545, 662
BmsI	GCATC	6 cut(s)	7, 51, 190, 829, 900, 1300
BpiI	GAAGAC	1 cut(s)	744
BplI	GAGNNNNNCTC	2 cut(s)	886, 918
BpmI	CTGGAG	2 cut(s)	42, 1214
BpuEI	CTTGAG	1 cut(s)	293
BsaBI	GATNNNNATC	1 cut(s)	1203
BsaI	GGTCTC	1 cut(s)	284
BsaWI	WCCGGW	1 cut(s)	1094
Bsc4I	CCNNNNNNNGG	2 cut(s)	661, 685
Bse118I	RCCGGY	1 cut(s)	1094
Bse1I	ACTGG	3 cut(s)	107, 501, 1013
Bse8I	GATNNNNATC	1 cut(s)	1203
BseBI	CCWGG	3 cut(s)	56, 545, 662
BseGI	GGATG	1 cut(s)	940
BseJI	GATNNNNATC	1 cut(s)	1203
BseLI	CCNNNNNNNGG	2 cut(s)	661, 685
BseMII	CTCAG	2 cut(s)	350, 1301
BseNI	ACTGG	3 cut(s)	107, 501, 1013
BseXI	GCAGC	3 cut(s)	394, 430, 1246
Bsh1236I	CGCG	1 cut(s)	837
BshFI	GGCC	2 cut(s)	32, 1005
BshNI	GGYRCC	1 cut(s)	497
BshTI	ACCGGT	1 cut(s)	1094
BsiHKAI	GWGCWC	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	1095
BslFI	GGGAC	2 cut(s)	587, 1105
BslI	CCNNNNNNNGG	2 cut(s)	661, 685
BsmAI	GTCTC	1 cut(s)	284
BsmFI	GGGAC	2 cut(s)	587, 1105
BsmI	GAATGC	1 cut(s)	897
BsnI	GGCC	2 cut(s)	32, 1005
Bso31I	GGTCTC	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	8 cut(s)	103, 249, 353, 520, 657, 1009, 1069, 1260
Bsp68I	TCGCGA	1 cut(s)	837
BspANI	GGCC	2 cut(s)	32, 1005
BspCNI	CTCAG	2 cut(s)	349, 1300
BspFNI	CGCG	1 cut(s)	837
BspLI	GGNNCC	4 cut(s)	451, 499, 522, 1093
BspPI	GGATC	7 cut(s)	98, 257, 348, 515, 528, 652, 1004
BspT107I	GGYRCC	1 cut(s)	497
BspTNI	GGTCTC	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	1094
BsrI	ACTGG	3 cut(s)	107, 501, 1013
BssAI	RCCGGY	1 cut(s)	1094
BssMI	GATC	8 cut(s)	103, 249, 353, 520, 657, 1009, 1069, 1260
BssSI	CACGAG	1 cut(s)	870
Bst2BI	CACGAG	1 cut(s)	870
Bst2UI	CCWGG	3 cut(s)	56, 545, 662
Bst4CI	ACNGT	8 cut(s)	92, 305, 461, 635, 699, 757, 882, 1189
Bst6I	CTCTTC	2 cut(s)	66, 306
BstDEI	CTNAG	3 cut(s)	336, 650, 1287
BstF5I	GGATG	1 cut(s)	940
BstFNI	CGCG	1 cut(s)	837
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	8 cut(s)	106, 252, 356, 523, 660, 1012, 1072, 1263
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	8 cut(s)	103, 249, 353, 520, 657, 1009, 1069, 1260
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 1175
BstNI	CCWGG	3 cut(s)	56, 545, 662
BstNSI	RCATGY	1 cut(s)	788
BstSCI	CCNGG	3 cut(s)	54, 543, 660
BstSFI	CTRYAG	1 cut(s)	457
BstUI	CGCG	1 cut(s)	837
BstV1I	GCAGC	3 cut(s)	394, 430, 1246
BstV2I	GAAGAC	1 cut(s)	744
BstX2I	RGATCY	5 cut(s)	103, 353, 520, 657, 1069
BstYI	RGATCY	5 cut(s)	103, 353, 520, 657, 1069
BsuRI	GGCC	2 cut(s)	32, 1005
BtgZI	GCGATG	2 cut(s)	852, 1277
BtsCI	GGATG	1 cut(s)	940
BtsIMutI	CAGTG	1 cut(s)	1020
BtuMI	TCGCGA	1 cut(s)	837
CaiI	CAGNNNCTG	4 cut(s)	20, 446, 661, 734
CfoI	GCGC	1 cut(s)	83
Cfr10I	RCCGGY	1 cut(s)	1094
Cfr13I	GGNCC	2 cut(s)	449, 1092
CsiI	ACCWGGT	1 cut(s)	54
Csp6I	GTAC	5 cut(s)	700, 788, 806, 1024, 1185
CspAI	ACCGGT	1 cut(s)	1094
CviAII	CATG	5 cut(s)	424, 722, 785, 1027, 1060
CviQI	GTAC	5 cut(s)	700, 788, 806, 1024, 1185
DdeI	CTNAG	3 cut(s)	336, 650, 1287
DpnI	GATC	8 cut(s)	105, 251, 355, 522, 659, 1011, 1071, 1262
DpnII	GATC	8 cut(s)	103, 249, 353, 520, 657, 1009, 1069, 1260
Eam1104I	CTCTTC	2 cut(s)	66, 306
EarI	CTCTTC	2 cut(s)	66, 306
Eco31I	GGTCTC	1 cut(s)	284
Eco47I	GGWCC	2 cut(s)	449, 1092
Eco57I	CTGAAG	2 cut(s)	756, 800
EcoRII	CCWGG	3 cut(s)	54, 543, 660
EcoT22I	ATGCAT	1 cut(s)	205
FaeI	CATG	5 cut(s)	427, 725, 788, 1030, 1063
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FaqI	GGGAC	2 cut(s)	587, 1105
FatI	CATG	5 cut(s)	423, 721, 784, 1026, 1059
FauNDI	CATATG	2 cut(s)	176, 205
Fnu4HI	GCNGC	3 cut(s)	383, 444, 1235
FokI	GGATG	1 cut(s)	947
Fsp4HI	GCNGC	3 cut(s)	383, 444, 1235
FspBI	CTAG	4 cut(s)	63, 707, 1182, 1238
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	3 cut(s)	383, 444, 1235
GsuI	CTGGAG	2 cut(s)	42, 1214
HaeII	RGCGCY	1 cut(s)	84
HaeIII	GGCC	2 cut(s)	32, 1005
HapII	CCGG	1 cut(s)	1095
HhaI	GCGC	1 cut(s)	83
Hin1II	CATG	5 cut(s)	427, 725, 788, 1030, 1063
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HincII	GTYRAC	2 cut(s)	112, 301
HindII	GTYRAC	2 cut(s)	112, 301
HindIII	AAGCTT	1 cut(s)	946
HinfI	GANTC	6 cut(s)	5, 469, 827, 924, 1085, 1310
HpaII	CCGG	1 cut(s)	1095
HphI	GGTGA	2 cut(s)	299, 1184
Hpy166II	GTNNAC	3 cut(s)	112, 301, 1018
Hpy188I	TCNGA	6 cut(s)	339, 406, 736, 819, 867, 1079
Hpy188III	TCNNGA	9 cut(s)	9, 46, 272, 308, 550, 629, 707, 836, 1217
Hpy8I	GTNNAC	3 cut(s)	112, 301, 1018
HpyAV	CCTTC	4 cut(s)	329, 337, 824, 1057
HpyCH4III	ACNGT	8 cut(s)	92, 305, 461, 635, 699, 757, 882, 1189
HpyCH4V	TGCA	6 cut(s)	42, 203, 218, 382, 728, 842
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 1175
HpyF3I	CTNAG	3 cut(s)	336, 650, 1287
Hsp92II	CATG	5 cut(s)	427, 725, 788, 1030, 1063
HspAI	GCGC	1 cut(s)	81
Kzo9I	GATC	8 cut(s)	103, 249, 353, 520, 657, 1009, 1069, 1260
LmnI	GCTCC	2 cut(s)	11, 88
Lsp1109I	GCAGC	3 cut(s)	394, 430, 1246
LweI	GCATC	6 cut(s)	7, 51, 190, 829, 900, 1300
MabI	ACCWGGT	1 cut(s)	54
MaeI	CTAG	4 cut(s)	63, 707, 1182, 1238
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	8 cut(s)	105, 251, 355, 522, 659, 1011, 1071, 1262
MboI	GATC	8 cut(s)	103, 249, 353, 520, 657, 1009, 1069, 1260
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	5 cut(s)	103, 353, 520, 657, 1069
MhlI	GDGCHC	1 cut(s)	230
MluCI	AATT	6 cut(s)	343, 507, 821, 847, 968, 1110
MlyI	GAGTC	2 cut(s)	933, 1319
Mph1103I	ATGCAT	1 cut(s)	205
MseI	TTAA	1 cut(s)	1318
MslI	CAYNNNNRTG	1 cut(s)	428
MspA1I	CMGCKG	2 cut(s)	233, 443
MspI	CCGG	1 cut(s)	1095
MspR9I	CCNGG	3 cut(s)	56, 545, 662
MunI	CAATTG	1 cut(s)	507
Mva1269I	GAATGC	1 cut(s)	897
MvaI	CCWGG	3 cut(s)	56, 545, 662
MvnI	CGCG	1 cut(s)	837
MwoI	GCNNNNNNNGC	2 cut(s)	215, 1175
NdeI	CATATG	2 cut(s)	176, 205
NdeII	GATC	8 cut(s)	103, 249, 353, 520, 657, 1009, 1069, 1260
NlaIII	CATG	5 cut(s)	427, 725, 788, 1030, 1063
NlaIV	GGNNCC	4 cut(s)	451, 499, 522, 1093
NmeAIII	GCCGAG	1 cut(s)	573
NruI	TCGCGA	1 cut(s)	837
NsiI	ATGCAT	1 cut(s)	205
NspI	RCATGY	1 cut(s)	788
PciI	ACATGT	1 cut(s)	784
PctI	GAATGC	1 cut(s)	897
PfeI	GAWTC	4 cut(s)	5, 469, 827, 1085
PflMI	CCANNNNNTGG	1 cut(s)	661
PinAI	ACCGGT	1 cut(s)	1094
PkrI	GCNGC	3 cut(s)	384, 445, 1236
PleI	GAGTC	2 cut(s)	932, 1318
PpsI	GAGTC	2 cut(s)	932, 1318
PscI	ACATGT	1 cut(s)	784
Psp6I	CCWGG	3 cut(s)	54, 543, 660
PspGI	CCWGG	3 cut(s)	54, 543, 660
PspN4I	GGNNCC	4 cut(s)	451, 499, 522, 1093
PspPI	GGNCC	2 cut(s)	449, 1092
PsrI	GAACNNNNNNTAC	2 cut(s)	1101, 1133
PstNI	CAGNNNCTG	4 cut(s)	20, 446, 661, 734
PsuI	RGATCY	5 cut(s)	103, 353, 520, 657, 1069
PvuII	CAGCTG	2 cut(s)	233, 443
RruI	TCGCGA	1 cut(s)	837
RsaI	GTAC	5 cut(s)	701, 789, 807, 1025, 1186
RsaNI	GTAC	5 cut(s)	700, 788, 806, 1024, 1185
RseI	CAYNNNNRTG	1 cut(s)	428
SaqAI	TTAA	1 cut(s)	1318
SatI	GCNGC	3 cut(s)	383, 444, 1235
Sau3AI	GATC	8 cut(s)	103, 249, 353, 520, 657, 1009, 1069, 1260
Sau96I	GGNCC	2 cut(s)	449, 1092
ScaI	AGTACT	1 cut(s)	1186
SchI	GAGTC	2 cut(s)	933, 1319
ScrFI	CCNGG	3 cut(s)	56, 545, 662
SduI	GDGCHC	1 cut(s)	230
SexAI	ACCWGGT	1 cut(s)	54
SfaNI	GCATC	6 cut(s)	7, 51, 190, 829, 900, 1300
SfcI	CTRYAG	1 cut(s)	457
SinI	GGWCC	2 cut(s)	449, 1092
SmiMI	CAYNNNNRTG	1 cut(s)	428
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SpeI	ACTAGT	1 cut(s)	1181
Sse9I	AATT	6 cut(s)	343, 507, 821, 847, 968, 1110
SspMI	CTAG	4 cut(s)	63, 707, 1182, 1238
StyD4I	CCNGG	3 cut(s)	54, 543, 660
TaaI	ACNGT	8 cut(s)	92, 305, 461, 635, 699, 757, 882, 1189
TaqI	TCGA	4 cut(s)	549, 904, 1008, 1308
TasI	AATT	6 cut(s)	343, 507, 821, 847, 968, 1110
TatI	WGTACW	3 cut(s)	805, 1023, 1184
TfiI	GAWTC	4 cut(s)	5, 469, 827, 1085
Tru1I	TTAA	1 cut(s)	1318
Tru9I	TTAA	1 cut(s)	1318
TscAI	CASTG	1 cut(s)	1020
TseI	GCWGC	3 cut(s)	382, 443, 1234
TspDTI	ATGAA	5 cut(s)	337, 384, 982, 1076, 1215
TspRI	CASTG	1 cut(s)	1020
Van91I	CCANNNNNTGG	1 cut(s)	661
VpaK11BI	GGWCC	2 cut(s)	449, 1092
XapI	RAATTY	1 cut(s)	343
XbaI	TCTAGA	1 cut(s)	706
XceI	RCATGY	1 cut(s)	788
XspI	CTAG	4 cut(s)	63, 707, 1182, 1238
ZrmI	AGTACT	1 cut(s)	1186
Zsp2I	ATGCAT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.