Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009346

Physical Location & Seq

Genomic Coordinates Forward (+)

86587029 .. 86590000

Gene Structure 2972 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00148950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGGGCCAGAAGAAAGCAACCGCCGCCGACGATACTCTCGAGCCTAAGAAACGCCGCCGCGTCGGCTTCTCCAGCGTCGCAGATGCTGGAGTGGAGGCCAAAGATTGCATCAAGATTTACCTGGTTTCTAGCAAAGAAGAGGTGGGCGCTTCAAACAGTTTTTGTTTAGATCCTGTTGACTTGAATAACTTTTTTGAGGAAGATGGGAAGATATATGGTTACAAAGGATTGAAGATTACCATATGGGTTAGCAGTATATCGTTTGATGCATATGCTGATATTGCATTTGAGAGCACAGCTGATGGAGGCAAAGGGATCACAGATTTGAAATCAGCTCTTGAGAAAGTTTTTGGTGAGACCCTTGTTGACAGTCAAGAAGAATCCATTATCTCAAATGGGGAGGTGTTGCAGCACAAGGCTTCATCTACTTCTGATGTGGAGGTTATTCGCATGGTTGTGGGAAAGACAGCTGCTGGACCCCTCTACAGTCGCTTGATTCCTCTTGTTTTTCTTCTTGTTGATGGTGCCAGTCCAATTGATGTTTTGGATCCAAGTTGGGAGTTGTATCTCCTGGTCGAGAAGAAAACAGATGAGCAAGGGGACATCTACAATATATTGCTCGGCTTTACAGCTCTGTATCGTTTTTATCATTATCCTGACAGTTCTCGGTTGCGACTTAGCCAGATCCTGGTATTGCCTCCTTACCAGCATAAGGGTTATGGACGGTACATTCTAGAAGTTCTCAATCATGTTGCAGTATCTGAAGACATCTATGACTTCACAGTAGAAGAACCATTGGACTACTTTCAACATGTACGCACTTGTGTTGATGTACTACGCATTCAGAAATTAGATTCTGTTCGCAATGCAGTCAATTTGGCTGTTTCAAATCTGACACGAGGAAAACTGTCAAAGAAAACGAGCCTCCCTCGACTGATGCCAACCACAAGAGTCATTGAGGATGTGAGGAAAAGCTTGAAAATCAACAAGAAACAATTTCTTCAATGTTGGGAGGTTTTCATCTATCTTGGCCTCGATCCAGTGGACAAGTACATGGAGGATTTTGTGAGCATTGTTTCTAATCGCATGAAGGAAGATCTCATCGGGAAAGAATCTGGGACTGGTGGAAAGCAAGTAATTGAAGTTCCAAGCGAATACATACCAGAGATGTCATTTGTTATGTTCAAGTCCAATGCTGGTGAAGCTACTAGTACTGTTCAGGTAGATGAAAATCAACCAAATCAGGAGGAGCAACTCCAGCAGTTAGTTGATGAGAGAGTGAATGAGATCAAATCAATAGCAGAGAAAGTATCTCAGCATCGCACAAGCATTGTCGAGTCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031974 GO:0031981 GO:0034212 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0061733 GO:0070013 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko05034 map05034

Pfam Domains

Protein Families

Acetyltransf_1 Hat1_N

Protein Analysis

448

Amino Acids

50.26

Weight (kDa)

5.07

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hat1_N	PF10394	31 - 174	1e-22	Histone acetyl transferase HAT1 N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56740 AT5G56740
fragaria_vesca	FvH4_1g06810
malus_domestica	MD02G1072700.v1.1 MD15G1202500.v1.1
prunus_persica	Prupe.7G214700_v2.0.a1
pyrus_communis	pycom02g05690 pycom15g17990
rosa_chinensis	RchiOBHm_Chr2g0092581
rosa_laevigata	RLG00000016325
rosa_multiflora	Rmu_sc0018576.1_g000001 Rmu_sc0019023.1_g000002
rosa_roxburghii	Rroxscaffold_2G00147670 Rroxscaffold_2G00147690 Rroxscaffold_2G00148950
rosa_rugosa	Rorug02G0027700
rosa_samantha	Rh2AG073600 Rh2AG087300 Rh2BG074500 Rh2CG075600 Rh2DG072700
rosa_wichuraiana	Rw2G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	524
AccB7I	CCANNNNNTGG	1 cut(s)	688
AccII	CGCG	1 cut(s)	60
AciI	CCGC	4 cut(s)	21, 24, 55, 58
AclWI	GGATC	6 cut(s)	164, 323, 542, 555, 679, 1031
AcuI	CTGAAG	1 cut(s)	783
AfaI	GTAC	5 cut(s)	728, 816, 834, 1052, 1213
AfiI	CCNNNNNNNGG	2 cut(s)	688, 712
AflIII	ACRYGT	1 cut(s)	811
AhlI	ACTAGT	1 cut(s)	1208
AjnI	CCWGG	3 cut(s)	120, 570, 687
AluBI	AGCT	6 cut(s)	299, 335, 470, 632, 975, 1205
AluI	AGCT	6 cut(s)	299, 335, 470, 632, 975, 1205
Alw21I	GWGCWC	1 cut(s)	296
Alw26I	GTCTC	1 cut(s)	350
AlwI	GGATC	6 cut(s)	164, 323, 542, 555, 679, 1031
AlwNI	CAGNNNCTG	4 cut(s)	86, 473, 688, 761
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	3 cut(s)	4, 96, 1030
ApeKI	GCWGC	2 cut(s)	409, 470
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	4, 476
AsuHPI	GGTGA	2 cut(s)	365, 1211
AvaI	CYCGRG	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	476
BamHI	GGATCC	1 cut(s)	547
BanI	GGYRCC	1 cut(s)	524
BauI	CACGAG	1 cut(s)	897
BbsI	GAAGAC	1 cut(s)	771
Bbv12I	GWGCWC	1 cut(s)	296
BbvI	GCAGC	2 cut(s)	421, 457
BccI	CCATC	3 cut(s)	197, 296, 515
BciT130I	CCWGG	3 cut(s)	122, 572, 689
BcoDI	GTCTC	1 cut(s)	350
BcuI	ACTAGT	1 cut(s)	1208
BfaI	CTAG	3 cut(s)	129, 734, 1209
BfmI	CTRYAG	1 cut(s)	484
BfoI	RGCGCY	1 cut(s)	150
BglI	GCCNNNNNGGC	1 cut(s)	63
BglII	AGATCT	1 cut(s)	1096
BisI	GCNGC	5 cut(s)	24, 55, 58, 410, 471
BlsI	GCNGC	5 cut(s)	25, 56, 59, 411, 472
BmcAI	AGTACT	1 cut(s)	1213
Bme1390I	CCNGG	3 cut(s)	122, 572, 689
Bme18I	GGWCC	1 cut(s)	476
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	2 cut(s)	4, 476
BmiI	GGNNCC	3 cut(s)	478, 526, 549
BmrFI	CCNGG	3 cut(s)	122, 572, 689
BmsI	GCATC	5 cut(s)	73, 117, 256, 927, 1327
BpiI	GAAGAC	1 cut(s)	771
BplI	GAGNNNNNCTC	2 cut(s)	913, 945
BpmI	CTGGAG	3 cut(s)	55, 108, 1241
BpuEI	CTTGAG	1 cut(s)	359
BsaBI	GATNNNNATC	1 cut(s)	1230
BsaI	GGTCTC	1 cut(s)	350
Bsc4I	CCNNNNNNNGG	2 cut(s)	688, 712
Bse1I	ACTGG	3 cut(s)	528, 1040, 1126
Bse3DI	GCAATG	1 cut(s)	871
Bse8I	GATNNNNATC	1 cut(s)	1230
BseBI	CCWGG	3 cut(s)	122, 572, 689
BseGI	GGATG	1 cut(s)	967
BseJI	GATNNNNATC	1 cut(s)	1230
BseLI	CCNNNNNNNGG	2 cut(s)	688, 712
BseMI	GCAATG	1 cut(s)	871
BseMII	CTCAG	1 cut(s)	1328
BseNI	ACTGG	3 cut(s)	528, 1040, 1126
BseRI	GAGGAG	1 cut(s)	1262
BseXI	GCAGC	2 cut(s)	421, 457
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	3 cut(s)	6, 98, 1032
BshNI	GGYRCC	1 cut(s)	524
BsiHKAI	GWGCWC	1 cut(s)	296
BsiHKCI	CYCGRG	1 cut(s)	38
BslFI	GGGAC	2 cut(s)	614, 1132
BslI	CCNNNNNNNGG	2 cut(s)	688, 712
BsmAI	GTCTC	1 cut(s)	350
BsmFI	GGGAC	2 cut(s)	614, 1132
BsmI	GAATGC	1 cut(s)	840
BsnI	GGCC	3 cut(s)	6, 98, 1032
Bso31I	GGTCTC	1 cut(s)	350
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	7 cut(s)	169, 315, 547, 684, 1036, 1096, 1287
BspACI	CCGC	4 cut(s)	21, 24, 55, 58
BspANI	GGCC	3 cut(s)	6, 98, 1032
BspCNI	CTCAG	1 cut(s)	1327
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	3 cut(s)	478, 526, 549
BspPI	GGATC	6 cut(s)	164, 323, 542, 555, 679, 1031
BspT107I	GGYRCC	1 cut(s)	524
BspTNI	GGTCTC	1 cut(s)	350
BsrDI	GCAATG	1 cut(s)	871
BsrI	ACTGG	3 cut(s)	528, 1040, 1126
BssMI	GATC	7 cut(s)	169, 315, 547, 684, 1036, 1096, 1287
BssSI	CACGAG	1 cut(s)	897
Bst2BI	CACGAG	1 cut(s)	897
Bst2UI	CCWGG	3 cut(s)	122, 572, 689
Bst4CI	ACNGT	8 cut(s)	158, 371, 488, 662, 726, 784, 909, 1216
Bst6I	CTCTTC	1 cut(s)	132
BstDEI	CTNAG	3 cut(s)	45, 677, 1314
BstF5I	GGATG	1 cut(s)	967
BstFNI	CGCG	1 cut(s)	60
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	7 cut(s)	172, 318, 550, 687, 1039, 1099, 1290
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	7 cut(s)	169, 315, 547, 684, 1036, 1096, 1287
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 63, 72, 281, 1202, 1258
BstNI	CCWGG	3 cut(s)	122, 572, 689
BstNSI	RCATGY	1 cut(s)	815
BstSCI	CCNGG	3 cut(s)	120, 570, 687
BstSFI	CTRYAG	1 cut(s)	484
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	2 cut(s)	421, 457
BstV2I	GAAGAC	1 cut(s)	771
BstX2I	RGATCY	4 cut(s)	169, 547, 684, 1096
BstYI	RGATCY	4 cut(s)	169, 547, 684, 1096
BsuRI	GGCC	3 cut(s)	6, 98, 1032
BtgZI	GCGATG	1 cut(s)	1304
BtsCI	GGATG	1 cut(s)	967
BtsIMutI	CAGTG	1 cut(s)	1047
CaiI	CAGNNNCTG	4 cut(s)	86, 473, 688, 761
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	2 cut(s)	4, 476
CseI	GACGC	2 cut(s)	49, 64
CsiI	ACCWGGT	1 cut(s)	120
Csp6I	GTAC	5 cut(s)	727, 815, 833, 1051, 1212
CviAII	CATG	5 cut(s)	451, 749, 812, 1054, 1087
CviQI	GTAC	5 cut(s)	727, 815, 833, 1051, 1212
DdeI	CTNAG	3 cut(s)	45, 677, 1314
DpnI	GATC	7 cut(s)	171, 317, 549, 686, 1038, 1098, 1289
DpnII	GATC	7 cut(s)	169, 315, 547, 684, 1036, 1096, 1287
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	476
Eco57I	CTGAAG	1 cut(s)	783
Eco88I	CYCGRG	1 cut(s)	38
EcoRII	CCWGG	3 cut(s)	120, 570, 687
EcoT22I	ATGCAT	1 cut(s)	271
FaeI	CATG	5 cut(s)	454, 752, 815, 1057, 1090
FaqI	GGGAC	2 cut(s)	614, 1132
FatI	CATG	5 cut(s)	450, 748, 811, 1053, 1086
FauNDI	CATATG	2 cut(s)	242, 271
Fnu4HI	GCNGC	5 cut(s)	24, 55, 58, 410, 471
FokI	GGATG	1 cut(s)	974
Fsp4HI	GCNGC	5 cut(s)	24, 55, 58, 410, 471
FspBI	CTAG	3 cut(s)	129, 734, 1209
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	5 cut(s)	24, 55, 58, 410, 471
GsuI	CTGGAG	3 cut(s)	55, 108, 1241
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	3 cut(s)	6, 98, 1032
HgaI	GACGC	2 cut(s)	49, 64
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	5 cut(s)	454, 752, 815, 1057, 1090
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HincII	GTYRAC	2 cut(s)	178, 367
HindII	GTYRAC	2 cut(s)	178, 367
HindIII	AAGCTT	1 cut(s)	973
HinfI	GANTC	6 cut(s)	380, 496, 854, 951, 1112, 1337
HphI	GGTGA	2 cut(s)	365, 1211
Hpy166II	GTNNAC	3 cut(s)	178, 367, 1045
Hpy188I	TCNGA	4 cut(s)	433, 763, 846, 894
Hpy188III	TCNNGA	9 cut(s)	38, 112, 338, 374, 577, 656, 734, 1105, 1244
Hpy8I	GTNNAC	3 cut(s)	178, 367, 1045
Hpy99I	CGWCG	3 cut(s)	32, 65, 80
HpyAV	CCTTC	1 cut(s)	1084
HpyCH4III	ACNGT	8 cut(s)	158, 371, 488, 662, 726, 784, 909, 1216
HpyCH4V	TGCA	6 cut(s)	108, 269, 284, 409, 755, 869
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 63, 72, 281, 1202, 1258
HpyF3I	CTNAG	3 cut(s)	45, 677, 1314
Hsp92II	CATG	5 cut(s)	454, 752, 815, 1057, 1090
HspAI	GCGC	1 cut(s)	147
Kzo9I	GATC	7 cut(s)	169, 315, 547, 684, 1036, 1096, 1287
LmnI	GCTCC	1 cut(s)	1249
Lsp1109I	GCAGC	2 cut(s)	421, 457
LweI	GCATC	5 cut(s)	73, 117, 256, 927, 1327
MabI	ACCWGGT	1 cut(s)	120
MaeI	CTAG	3 cut(s)	129, 734, 1209
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	7 cut(s)	171, 317, 549, 686, 1038, 1098, 1289
MboI	GATC	7 cut(s)	169, 315, 547, 684, 1036, 1096, 1287
MfeI	CAATTG	1 cut(s)	534
MflI	RGATCY	4 cut(s)	169, 547, 684, 1096
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	5 cut(s)	534, 848, 874, 995, 1137
MlyI	GAGTC	2 cut(s)	960, 1346
Mph1103I	ATGCAT	1 cut(s)	271
MseI	TTAA	1 cut(s)	1345
MslI	CAYNNNNRTG	1 cut(s)	455
MspA1I	CMGCKG	2 cut(s)	299, 470
MspR9I	CCNGG	3 cut(s)	122, 572, 689
MunI	CAATTG	1 cut(s)	534
Mva1269I	GAATGC	1 cut(s)	840
MvaI	CCWGG	3 cut(s)	122, 572, 689
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	6 cut(s)	23, 63, 72, 281, 1202, 1258
NdeI	CATATG	2 cut(s)	242, 271
NdeII	GATC	7 cut(s)	169, 315, 547, 684, 1036, 1096, 1287
NlaIII	CATG	5 cut(s)	454, 752, 815, 1057, 1090
NlaIV	GGNNCC	3 cut(s)	478, 526, 549
NmeAIII	GCCGAG	1 cut(s)	600
NsiI	ATGCAT	1 cut(s)	271
NspI	RCATGY	1 cut(s)	815
PaeR7I	CTCGAG	1 cut(s)	38
PciI	ACATGT	1 cut(s)	811
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PctI	GAATGC	1 cut(s)	840
PfeI	GAWTC	4 cut(s)	380, 496, 854, 1112
PflMI	CCANNNNNTGG	1 cut(s)	688
PkrI	GCNGC	5 cut(s)	25, 56, 59, 411, 472
PleI	GAGTC	2 cut(s)	959, 1345
PpsI	GAGTC	2 cut(s)	959, 1345
PscI	ACATGT	1 cut(s)	811
Psp6I	CCWGG	3 cut(s)	120, 570, 687
PspGI	CCWGG	3 cut(s)	120, 570, 687
PspN4I	GGNNCC	3 cut(s)	478, 526, 549
PspPI	GGNCC	2 cut(s)	4, 476
PsrI	GAACNNNNNNTAC	2 cut(s)	1128, 1160
PstNI	CAGNNNCTG	4 cut(s)	86, 473, 688, 761
PsuI	RGATCY	4 cut(s)	169, 547, 684, 1096
PvuII	CAGCTG	2 cut(s)	299, 470
RsaI	GTAC	5 cut(s)	728, 816, 834, 1052, 1213
RsaNI	GTAC	5 cut(s)	727, 815, 833, 1051, 1212
RseI	CAYNNNNRTG	1 cut(s)	455
SaqAI	TTAA	1 cut(s)	1345
SatI	GCNGC	5 cut(s)	24, 55, 58, 410, 471
Sau3AI	GATC	7 cut(s)	169, 315, 547, 684, 1036, 1096, 1287
Sau96I	GGNCC	2 cut(s)	4, 476
ScaI	AGTACT	1 cut(s)	1213
SchI	GAGTC	2 cut(s)	960, 1346
ScrFI	CCNGG	3 cut(s)	122, 572, 689
SduI	GDGCHC	1 cut(s)	296
SexAI	ACCWGGT	1 cut(s)	120
SfaNI	GCATC	5 cut(s)	73, 117, 256, 927, 1327
SfcI	CTRYAG	1 cut(s)	484
Sfr274I	CTCGAG	1 cut(s)	38
SinI	GGWCC	1 cut(s)	476
SlaI	CTCGAG	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	2 cut(s)	38, 338
SmoI	CTYRAG	2 cut(s)	38, 338
SpeI	ACTAGT	1 cut(s)	1208
Sse9I	AATT	5 cut(s)	534, 848, 874, 995, 1137
SsiI	CCGC	4 cut(s)	21, 24, 55, 58
SspMI	CTAG	3 cut(s)	129, 734, 1209
StyD4I	CCNGG	3 cut(s)	120, 570, 687
TaaI	ACNGT	8 cut(s)	158, 371, 488, 662, 726, 784, 909, 1216
TaqI	TCGA	5 cut(s)	39, 576, 931, 1035, 1335
TasI	AATT	5 cut(s)	534, 848, 874, 995, 1137
TatI	WGTACW	3 cut(s)	832, 1050, 1211
TauI	GCSGC	3 cut(s)	26, 57, 60
TfiI	GAWTC	4 cut(s)	380, 496, 854, 1112
Tru1I	TTAA	1 cut(s)	1345
Tru9I	TTAA	1 cut(s)	1345
TscAI	CASTG	1 cut(s)	1047
TseI	GCWGC	2 cut(s)	409, 470
TspDTI	ATGAA	4 cut(s)	411, 1009, 1103, 1242
TspRI	CASTG	1 cut(s)	1047
Van91I	CCANNNNNTGG	1 cut(s)	688
VpaK11BI	GGWCC	1 cut(s)	476
XbaI	TCTAGA	1 cut(s)	733
XceI	RCATGY	1 cut(s)	815
XhoI	CTCGAG	1 cut(s)	38
XspI	CTAG	3 cut(s)	129, 734, 1209
ZrmI	AGTACT	1 cut(s)	1213
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.