Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0011507

Physical Location & Seq

Genomic Coordinates Reverse (-)

3924292 .. 3925056

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g07400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAATTCCCCTGTATTCTTCTTCGTGGCTTCTCTCATTGTTTCATGTTCCTATGCTTCACACGTCCAAGACTTCTGCGTTGCAGACTATGCAGCTCCCAAGAGCCCTGTAGGCTACGCATGCAAAGACCCTGCTAAGGTCACAGTAGACGATTTCATCCACTCTGGCCTTGGGGTGCCTTCTAACACTTCAAACGTGTTCAAGTTTGGTTTCTCAGCTGCATTTGCTTTTAACTACTCCGGTATCAATGGCCTCGGCGTTTCCTTGGGCCGCGCGGATGTGGAAGTTGGCGGCGTTGTTCCCATCCACGCTCACCCCGGAGCAACCGAGTTGGTGGTTGTTGCAGAAGGAAGTAACATAATCGGCGGGTTCATTGCCTCGAACAGCAAGGTTTACCAAAAGCCCTTGACCAAGGGTGACACTATGGTTCTTCCACAAGGATTGTATCACTTCTTTGTGAATCAAGGTAACACTCCGGCGGTCATATATGCTGCTTTCAGTAGTGAGAGCCCAACCGTGCAGCTAATGGACACATCACTGTTTAAGAATGATTTGTCTTCTGATATCGTAGCAAAGACTACTTTGCTTGATCTTGCTCAGGTTCAGAAACTCAAGAAACTTTTTGGTGGTACTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

213

Amino Acids

22.35

Weight (kDa)

6.17

Isoelectric Point (pI)

27.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	56 - 201	3.7e-27	Cupin
Cupin_2	PF07883	92 - 164	1.4e-07	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011507)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g07400
rosa_chinensis	RchiOBHm_Chr2g0093281 RchiOBHm_Chr4g0400351
rosa_laevigata	RLG00000009199 RLG00000016387
rosa_multiflora	Rmu_co8320973.1_g000001 Rmu_sc0004187.1_g000004 Rmu_sc0018548.1_g000001 Rmu_ssc0000245.1_g000020
rosa_roxburghii	Rroxscaffold_2G00148260 Rroxscaffold_5G00345330
rosa_rugosa	Rorug02G0034300 Rorug06G0094000
rosa_samantha	Rh2AG080500 Rh4AG100800 Rh4DG094500 Rh6CG211600
rosa_wichuraiana	Rw0G019270 Rw2G006650 Rw6G017920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	175
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	2 cut(s)	273, 275
AciI	CCGC	5 cut(s)	271, 275, 291, 366, 479
AcsI	RAATTY	1 cut(s)	4
AfaI	GTAC	1 cut(s)	631
AfiI	CCNNNNNNNGG	1 cut(s)	136
AflIII	ACRYGT	2 cut(s)	61, 195
AgsI	TTSAA	2 cut(s)	192, 202
AjiI	CACGTC	1 cut(s)	64
AluBI	AGCT	3 cut(s)	95, 218, 523
AluI	AGCT	3 cut(s)	95, 218, 523
AoxI	GGCC	3 cut(s)	166, 250, 268
ApeKI	GCWGC	4 cut(s)	92, 218, 491, 520
ApoI	RAATTY	1 cut(s)	4
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	268
AsuC2I	CCSGG	1 cut(s)	318
AsuHPI	GGTGA	2 cut(s)	305, 428
BaeI	ACNNNNGTAYC	2 cut(s)	226, 259
BanI	GGYRCC	1 cut(s)	175
BanII	GRGCYC	2 cut(s)	107, 512
BbsI	GAAGAC	1 cut(s)	549
BbvI	GCAGC	4 cut(s)	104, 205, 478, 532
BccI	CCATC	1 cut(s)	311
BcnI	CCSGG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	108
BglI	GCCNNNNNGGC	1 cut(s)	111
BisI	GCNGC	6 cut(s)	93, 219, 271, 292, 492, 521
BlsI	GCNGC	6 cut(s)	94, 220, 272, 293, 493, 522
Bme1390I	CCNGG	1 cut(s)	318
BmgBI	CACGTC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	549
Bpu10I	CCTNAGC	2 cut(s)	135, 597
BpuEI	CTTGAG	1 cut(s)	596
BpuMI	CCSGG	1 cut(s)	318
BsaJI	CCNNGG	5 cut(s)	169, 253, 264, 316, 411
BsaWI	WCCGGW	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse3DI	GCAATG	1 cut(s)	372
BseDI	CCNNGG	5 cut(s)	169, 253, 264, 316, 411
BseGI	GGATG	3 cut(s)	156, 283, 303
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	2 cut(s)	228, 611
BseXI	GCAGC	4 cut(s)	104, 205, 478, 532
BsgI	GTGCAG	1 cut(s)	539
Bsh1236I	CGCG	2 cut(s)	273, 275
BshFI	GGCC	3 cut(s)	168, 252, 270
BshNI	GGYRCC	1 cut(s)	175
BsiSI	CCGG	3 cut(s)	240, 318, 476
BslI	CCNNNNNNNGG	1 cut(s)	136
BsnI	GGCC	3 cut(s)	168, 252, 270
Bsp1286I	GDGCHC	2 cut(s)	107, 512
Bsp143I	GATC	1 cut(s)	589
BspACI	CCGC	5 cut(s)	271, 275, 291, 366, 479
BspANI	GGCC	3 cut(s)	168, 252, 270
BspCNI	CTCAG	2 cut(s)	227, 610
BspFNI	CGCG	2 cut(s)	273, 275
BspLI	GGNNCC	1 cut(s)	177
BspT107I	GGYRCC	1 cut(s)	175
BsrDI	GCAATG	1 cut(s)	372
BssECI	CCNNGG	5 cut(s)	169, 253, 264, 316, 411
BssMI	GATC	1 cut(s)	589
BssT1I	CCWWGG	3 cut(s)	169, 264, 411
Bst4CI	ACNGT	3 cut(s)	145, 517, 540
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	3 cut(s)	135, 214, 597
BstF5I	GGATG	3 cut(s)	156, 283, 303
BstFNI	CGCG	2 cut(s)	273, 275
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	1 cut(s)	592
BstMBI	GATC	1 cut(s)	589
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 111, 120, 224
BstNSI	RCATGY	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	316
BstSFI	CTRYAG	1 cut(s)	108
BstUI	CGCG	2 cut(s)	273, 275
BstV1I	GCAGC	4 cut(s)	104, 205, 478, 532
BstV2I	GAAGAC	1 cut(s)	549
BsuRI	GGCC	3 cut(s)	168, 252, 270
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	3 cut(s)	156, 283, 303
BtsIMutI	CAGTG	1 cut(s)	536
Cac8I	GCNNGC	1 cut(s)	121
CfoI	GCGC	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	630
CspCI	CAANNNNNGTGG	2 cut(s)	423, 458
CviAII	CATG	2 cut(s)	45, 120
CviQI	GTAC	1 cut(s)	630
DdeI	CTNAG	3 cut(s)	135, 214, 597
DpnI	GATC	1 cut(s)	591
DpnII	GATC	1 cut(s)	589
Eco130I	CCWWGG	3 cut(s)	169, 264, 411
Eco24I	GRGCYC	2 cut(s)	107, 512
Eco32I	GATATC	1 cut(s)	565
EcoRI	GAATTC	1 cut(s)	4
EcoRV	GATATC	1 cut(s)	565
EcoT14I	CCWWGG	3 cut(s)	169, 264, 411
EcoT38I	GRGCYC	2 cut(s)	107, 512
ErhI	CCWWGG	3 cut(s)	169, 264, 411
FaeI	CATG	2 cut(s)	48, 123
FaiI	YATR	9 cut(s)	46, 54, 90, 121, 359, 425, 485, 487, 489
FatI	CATG	2 cut(s)	44, 119
FauI	CCCGC	1 cut(s)	359
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	6 cut(s)	93, 219, 271, 292, 492, 521
FokI	GGATG	3 cut(s)	143, 290, 290
FriOI	GRGCYC	2 cut(s)	107, 512
Fsp4HI	GCNGC	6 cut(s)	93, 219, 271, 292, 492, 521
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	6 cut(s)	93, 219, 271, 292, 492, 521
HaeIII	GGCC	3 cut(s)	168, 252, 270
HapII	CCGG	3 cut(s)	240, 318, 476
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	2 cut(s)	48, 123
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HinfI	GANTC	1 cut(s)	460
HpaII	CCGG	3 cut(s)	240, 318, 476
HphI	GGTGA	2 cut(s)	305, 428
Hpy166II	GTNNAC	2 cut(s)	148, 394
Hpy188I	TCNGA	2 cut(s)	562, 606
Hpy188III	TCNNGA	1 cut(s)	613
Hpy8I	GTNNAC	2 cut(s)	148, 394
HpyAV	CCTTC	2 cut(s)	189, 341
HpyCH4III	ACNGT	3 cut(s)	145, 517, 540
HpyCH4IV	ACGT	2 cut(s)	63, 195
HpyCH4V	TGCA	6 cut(s)	83, 92, 123, 221, 344, 520
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 111, 120, 224
HpyF3I	CTNAG	3 cut(s)	135, 214, 597
HpySE526I	ACGT	2 cut(s)	63, 195
Hsp92II	CATG	2 cut(s)	48, 123
HspAI	GCGC	1 cut(s)	273
Kzo9I	GATC	1 cut(s)	589
LmnI	GCTCC	2 cut(s)	100, 320
LpnPI	CCDG	8 cut(s)	24, 120, 144, 150, 253, 331, 489, 584
Lsp1109I	GCAGC	4 cut(s)	104, 205, 478, 532
MaeII	ACGT	2 cut(s)	63, 195
MaeIII	GTNAC	4 cut(s)	139, 353, 416, 467
MalI	GATC	1 cut(s)	591
MboI	GATC	1 cut(s)	589
MboII	GAAGA	4 cut(s)	10, 13, 422, 549
MhlI	GDGCHC	2 cut(s)	107, 512
MluCI	AATT	2 cut(s)	4, 634
MnlI	CCTC	2 cut(s)	263, 388
MseI	TTAA	3 cut(s)	231, 543, 637
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	3 cut(s)	240, 318, 476
MspR9I	CCNGG	1 cut(s)	318
MvnI	CGCG	2 cut(s)	273, 275
MwoI	GCNNNNNNNGC	4 cut(s)	89, 111, 120, 224
NciI	CCSGG	1 cut(s)	318
NdeII	GATC	1 cut(s)	589
NlaIII	CATG	2 cut(s)	48, 123
NlaIV	GGNNCC	1 cut(s)	177
NmeAIII	GCCGAG	1 cut(s)	234
NmuCI	GTSAC	2 cut(s)	139, 416
NspI	RCATGY	1 cut(s)	123
PaeI	GCATGC	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	460
PkrI	GCNGC	6 cut(s)	94, 220, 272, 293, 493, 522
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	1 cut(s)	268
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	1 cut(s)	631
RsaNI	GTAC	1 cut(s)	630
SaqAI	TTAA	3 cut(s)	231, 543, 637
SatI	GCNGC	6 cut(s)	93, 219, 271, 292, 492, 521
Sau3AI	GATC	1 cut(s)	589
Sau96I	GGNCC	1 cut(s)	268
ScrFI	CCNGG	1 cut(s)	318
SduI	GDGCHC	2 cut(s)	107, 512
SetI	ASST	9 cut(s)	66, 97, 141, 198, 220, 393, 469, 525, 603
SfcI	CTRYAG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
SphI	GCATGC	1 cut(s)	123
Sse9I	AATT	2 cut(s)	4, 634
SsiI	CCGC	5 cut(s)	271, 275, 291, 366, 479
StyD4I	CCNGG	1 cut(s)	316
StyI	CCWWGG	3 cut(s)	169, 264, 411
TaaI	ACNGT	3 cut(s)	145, 517, 540
TaiI	ACGT	2 cut(s)	66, 198
TaqI	TCGA	1 cut(s)	380
TasI	AATT	2 cut(s)	4, 634
TauI	GCSGC	2 cut(s)	273, 294
TfiI	GAWTC	1 cut(s)	460
Tru1I	TTAA	3 cut(s)	231, 543, 637
Tru9I	TTAA	3 cut(s)	231, 543, 637
TscAI	CASTG	1 cut(s)	543
TseFI	GTSAC	2 cut(s)	139, 416
TseI	GCWGC	4 cut(s)	92, 218, 491, 520
Tsp45I	GTSAC	2 cut(s)	139, 416
TspDTI	ATGAA	4 cut(s)	17, 33, 145, 361
TspRI	CASTG	1 cut(s)	543
XapI	RAATTY	1 cut(s)	4
XceI	RCATGY	1 cut(s)	123
XcmI	CCANNNNNNNNNTGG	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.